Wall clock time and date at job start Tue Mar 31 2020 19:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.52147 * 2 1 4 4 C 1.53039 * 109.49732 * 239.92286 * 2 1 3 5 5 C 1.53045 * 109.53838 * 301.40887 * 4 2 1 6 6 C 1.53190 * 109.31387 * 298.63949 * 5 4 2 7 7 H 1.08995 * 109.70306 * 294.77655 * 6 5 4 8 8 C 1.52998 * 109.58613 * 174.42105 * 6 5 4 9 9 N 1.46499 * 109.47115 * 180.54070 * 8 6 5 10 10 C 1.34774 * 120.00219 * 179.97438 * 9 8 6 11 11 O 1.21281 * 120.00174 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00078 * 179.97438 * 10 9 8 13 13 H 1.08999 * 109.67037 * 60.50390 * 12 10 9 14 14 C 1.53355 * 109.67211 * 181.03724 * 12 10 9 15 15 C 1.52934 * 108.66025 * 187.28061 * 14 12 10 16 16 N 1.45759 * 110.47931 * 309.21578 * 15 14 12 17 17 C 1.33349 * 124.10307 * 19.11399 * 16 15 14 18 18 O 1.21285 * 118.24358 * 177.77285 * 17 16 15 19 19 C 1.50179 * 123.51491 * 357.75415 * 17 16 15 20 20 N 1.46928 * 108.77556 * 54.63202 * 6 5 4 21 21 C 1.36941 * 120.62808 * 126.41563 * 20 6 5 22 22 H 1.07995 * 120.00095 * 328.24818 * 21 20 6 23 23 C 1.38818 * 119.99569 * 148.25297 * 21 20 6 24 24 N 1.31611 * 120.00020 * 347.73526 * 23 21 20 25 25 Si 1.86799 * 119.99643 * 167.73891 * 23 21 20 26 26 H 1.48498 * 109.47090 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47223 * 119.99501 * 25 23 21 28 28 H 1.48501 * 109.47267 * 239.99683 * 25 23 21 29 29 C 1.46928 * 118.73959 * 306.39256 * 20 6 5 30 30 H 1.08997 * 109.47286 * 299.91580 * 1 2 3 31 31 H 1.09006 * 109.47022 * 59.91997 * 1 2 3 32 32 H 1.09001 * 109.47105 * 179.91736 * 1 2 3 33 33 H 1.09007 * 109.46882 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47279 * 300.07663 * 3 2 1 35 35 H 1.08996 * 109.46845 * 60.08481 * 3 2 1 36 36 H 1.08996 * 109.46504 * 61.43244 * 4 2 1 37 37 H 1.09007 * 109.45966 * 181.39299 * 4 2 1 38 38 H 1.08998 * 109.49832 * 178.68515 * 5 4 2 39 39 H 1.08997 * 109.51935 * 58.60413 * 5 4 2 40 40 H 1.08999 * 109.47064 * 300.53749 * 8 6 5 41 41 H 1.08995 * 109.47279 * 60.54201 * 8 6 5 42 42 H 0.97008 * 120.00062 * 0.02562 * 9 8 6 43 43 H 1.08996 * 109.60055 * 307.02129 * 14 12 10 44 44 H 1.08993 * 109.60196 * 67.51060 * 14 12 10 45 45 H 1.09000 * 109.29150 * 188.91724 * 15 14 12 46 46 H 1.09005 * 109.15203 * 69.42950 * 15 14 12 47 47 H 0.96996 * 117.94248 * 199.08876 * 16 15 14 48 48 H 1.08994 * 109.40172 * 257.45684 * 19 17 16 49 49 H 1.09004 * 109.33258 * 137.66494 * 19 17 16 50 50 H 0.97005 * 119.99742 * 180.02562 * 24 23 21 51 51 H 1.09010 * 109.58195 * 293.82172 * 29 20 6 52 52 H 1.08994 * 109.58669 * 173.39750 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0407 -0.7230 -1.2484 5 6 1.5030 -2.1558 -1.2661 6 6 2.0140 -2.9040 -0.0309 7 1 3.0978 -3.0064 -0.0855 8 6 1.3703 -4.2906 0.0316 9 7 1.8508 -4.9989 1.2205 10 6 1.4153 -6.2470 1.4833 11 8 0.6259 -6.7839 0.7353 12 6 1.9100 -6.9759 2.7061 13 1 1.6370 -6.4175 3.6015 14 6 1.2869 -8.3761 2.7598 15 6 1.6567 -9.0254 4.0942 16 7 3.0938 -8.9390 4.3224 17 6 3.9001 -8.0814 3.6958 18 8 5.0747 -8.0728 3.9977 19 6 3.4317 -7.1258 2.6362 20 7 1.6515 -2.1382 1.1695 21 6 0.9639 -2.7315 2.1944 22 1 0.2588 -3.5222 1.9850 23 6 1.1732 -2.3165 3.5024 24 7 2.1919 -1.5341 3.7895 25 14 0.0092 -2.8686 4.8550 26 1 -1.0471 -3.7366 4.2753 27 1 0.7674 -3.6289 5.8809 28 1 -0.6185 -1.6788 5.4841 29 6 2.0412 -0.7238 1.2495 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1313 1.4411 -0.0005 34 1 1.6773 1.9566 -0.8892 35 1 1.6796 1.9557 0.8907 36 1 1.6987 -0.1958 -2.1389 37 1 3.1305 -0.7443 -1.2353 38 1 1.8481 -2.6628 -2.1672 39 1 0.4133 -2.1359 -1.2544 40 1 0.2866 -4.1861 0.0841 41 1 1.6380 -4.8559 -0.8610 42 1 2.4819 -4.5694 1.8191 43 1 0.2028 -8.2972 2.6797 44 1 1.6737 -8.9802 1.9392 45 1 1.3565 -10.0731 4.0803 46 1 1.1324 -8.5111 4.8996 47 1 3.4881 -9.5430 4.9709 48 1 3.7132 -7.5072 1.6547 49 1 3.8990 -6.1539 2.7947 50 1 2.3384 -1.2445 4.7037 51 1 3.1275 -0.6463 1.2980 52 1 1.6007 -0.2731 2.1388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089624285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:49 Heat of formation + Delta-G solvation = -70.754277 kcal Electronic energy + Delta-G solvation = -31731.524359 eV Core-core repulsion = 27730.524105 eV Total energy + Delta-G solvation = -4001.000254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.52321 -39.23054 -38.44280 -36.27113 -35.08972 -33.33024 -33.11974 -32.02916 -30.02755 -29.66821 -27.58132 -26.62696 -25.52823 -25.24336 -23.70247 -22.60235 -22.17765 -20.15901 -19.76890 -19.15655 -17.92978 -17.53962 -16.84701 -16.27373 -16.09869 -15.51501 -15.36789 -15.17612 -14.59054 -14.22562 -14.18680 -13.87679 -13.86335 -13.53271 -13.37919 -13.30203 -13.18275 -12.91661 -12.40649 -12.21019 -11.86944 -11.79795 -11.60260 -11.41679 -11.31868 -11.17559 -11.06118 -11.05133 -10.91741 -10.82051 -10.61989 -10.43699 -10.16533 -10.12654 -10.05215 -9.82121 -9.49129 -9.34869 -9.17153 -9.15557 -8.63061 -8.27101 -6.67147 -5.88171 -3.35637 2.63185 3.07623 3.23281 3.25244 3.36549 3.37474 3.70500 4.36993 4.51115 4.63384 4.76404 4.78424 5.16779 5.23793 5.25705 5.26581 5.29413 5.43359 5.47137 5.56489 5.60267 5.67616 5.73498 5.78942 5.86448 5.95896 6.00703 6.08287 6.13737 6.15811 6.21964 6.31364 6.35302 6.43396 6.45991 6.46503 6.50718 6.63807 6.68586 6.89161 6.91746 6.99950 7.10283 7.13528 7.24302 7.36554 7.64924 7.74643 8.17104 8.18772 8.37138 8.77980 9.12138 9.73476 10.32354 11.18115 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013357 B = 0.003890 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.805146 B = 7196.147138 C = 7933.850401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.096 4.096 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.031 0.969 8 C 0.135 3.865 9 N -0.690 5.690 10 C 0.514 3.486 11 O -0.562 6.562 12 C -0.113 4.113 13 H 0.106 0.894 14 C -0.115 4.115 15 C 0.109 3.891 16 N -0.721 5.721 17 C 0.526 3.474 18 O -0.558 6.558 19 C -0.125 4.125 20 N -0.585 5.585 21 C -0.249 4.249 22 H 0.070 0.930 23 C 0.010 3.990 24 N -0.896 5.896 25 Si 0.887 3.113 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.289 1.289 29 C 0.188 3.812 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.416 0.584 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.398 0.602 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.253 0.747 51 H 0.017 0.983 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 -6.894 -4.041 8.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.133 4.133 5 C -0.169 4.169 6 C 0.053 3.947 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.340 5.340 10 C 0.299 3.701 11 O -0.442 6.442 12 C -0.134 4.134 13 H 0.124 0.876 14 C -0.153 4.153 15 C -0.016 4.016 16 N -0.374 5.374 17 C 0.313 3.687 18 O -0.436 6.436 19 C -0.165 4.165 20 N -0.308 5.308 21 C -0.379 4.379 22 H 0.087 0.913 23 C -0.190 4.190 24 N -0.540 5.540 25 Si 0.717 3.283 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.216 1.216 29 C 0.062 3.938 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.254 0.746 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.233 0.767 48 H 0.122 0.878 49 H 0.129 0.871 50 H 0.064 0.936 51 H 0.035 0.965 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.050 -7.024 -4.420 8.365 hybrid contribution -0.315 -0.051 1.420 1.455 sum -1.365 -7.075 -3.001 7.806 Atomic orbital electron populations 1.21699 0.95169 1.02040 0.99217 1.21244 0.95823 0.94397 0.98206 1.21760 1.00379 0.96512 1.00500 1.21410 0.99603 0.95343 0.96981 1.22001 1.01267 0.96072 0.97590 1.20738 0.96006 0.89355 0.88642 0.95099 1.21290 0.99552 0.91740 0.86367 1.46043 1.46551 1.14150 1.27229 1.20151 0.81588 0.82042 0.86277 1.90641 1.35662 1.67889 1.50030 1.21432 0.95186 0.97517 0.99309 0.87583 1.21698 1.02931 0.94241 0.96435 1.21474 0.80307 1.01580 0.98210 1.45482 1.09017 1.38915 1.43956 1.20078 0.85692 0.80655 0.82237 1.90762 1.17373 1.70331 1.65183 1.21644 0.95032 1.00851 0.99021 1.44031 1.65472 1.05689 1.15647 1.19199 1.15908 1.18025 0.84756 0.91284 1.25083 0.96626 1.00071 0.97211 1.69986 1.27640 1.37842 1.18556 0.86449 0.80915 0.78342 0.82562 1.20184 1.21637 1.21563 1.20807 0.96025 0.83095 0.93847 0.93670 0.95082 0.91613 0.93334 0.93981 0.93065 0.93681 0.92942 0.93175 0.91655 0.91620 0.92739 0.74627 0.88677 0.90394 0.90215 0.91345 0.76732 0.87802 0.87090 0.93624 0.96494 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 7.99 37.16 0.30 -1.85 16 2 C -0.09 -1.65 0.77 -154.39 -0.12 -1.77 16 3 C -0.13 -2.07 8.48 37.16 0.32 -1.75 16 4 C -0.10 -1.51 4.71 -26.69 -0.13 -1.63 16 5 C -0.13 -2.06 5.03 -26.61 -0.13 -2.19 16 6 C 0.16 2.88 3.01 -67.60 -0.20 2.68 16 7 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 8 C 0.13 2.36 4.43 -4.04 -0.02 2.34 16 9 N -0.69 -12.00 3.76 -60.30 -0.23 -12.22 16 10 C 0.51 8.60 7.14 -10.98 -0.08 8.52 16 11 O -0.56 -10.78 15.89 5.56 0.09 -10.69 16 12 C -0.11 -1.53 2.60 -91.55 -0.24 -1.77 16 13 H 0.11 1.50 8.13 -51.93 -0.42 1.07 16 14 C -0.11 -1.28 4.71 -26.58 -0.13 -1.41 16 15 C 0.11 0.96 7.17 -4.48 -0.03 0.93 16 16 N -0.72 -7.78 5.45 -61.38 -0.33 -8.12 16 17 C 0.53 7.42 7.71 -11.87 -0.09 7.32 16 18 O -0.56 -10.01 17.78 5.55 0.10 -9.91 16 19 C -0.13 -1.66 5.18 -28.10 -0.15 -1.80 16 20 N -0.58 -12.38 2.41 -164.78 -0.40 -12.77 16 21 C -0.25 -5.78 6.94 -15.05 -0.10 -5.88 16 22 H 0.07 1.66 5.88 -52.49 -0.31 1.35 16 23 C 0.01 0.24 5.01 -17.43 -0.09 0.15 16 24 N -0.90 -23.33 11.18 55.49 0.62 -22.71 16 25 Si 0.89 20.03 29.57 -169.99 -5.03 15.01 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.19 3.99 3.93 -3.71 -0.01 3.98 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 1.24 5.97 -51.93 -0.31 0.93 16 33 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.08 6.33 -51.93 -0.33 0.75 16 40 H 0.07 1.27 7.42 -51.93 -0.39 0.89 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.42 7.64 7.08 -40.82 -0.29 7.35 16 43 H 0.09 1.09 7.89 -51.93 -0.41 0.68 16 44 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.40 3.72 8.80 -40.82 -0.36 3.36 16 48 H 0.10 1.28 8.09 -51.93 -0.42 0.86 16 49 H 0.11 1.54 7.92 -51.93 -0.41 1.13 16 50 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 51 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 52 H 0.09 2.10 6.19 -51.93 -0.32 1.78 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -28.99 394.17 -9.16 -38.16 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -9.02 Total: 11.47 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.91 Total: 5.86 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.34 Total: -55.83 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.19 Total: -20.61 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.99 -9.16 -38.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089624285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.598 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds