Wall clock time and date at job start Tue Mar 31 2020 19:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46760 * 124.35172 * 2 1 4 4 C 1.54482 * 105.47591 * 197.03814 * 3 2 1 5 5 H 1.08998 * 111.00378 * 216.45335 * 4 3 2 6 6 C 1.50699 * 110.96828 * 92.70111 * 4 3 2 7 7 O 1.21281 * 120.00426 * 5.77600 * 6 4 3 8 8 N 1.34786 * 120.00048 * 185.77542 * 6 4 3 9 9 C 1.46501 * 119.99903 * 184.69594 * 8 6 4 10 10 C 1.52995 * 109.46815 * 182.69174 * 9 8 6 11 11 H 1.09000 * 109.58862 * 299.76122 * 10 9 8 12 12 C 1.53163 * 109.70551 * 179.39173 * 10 9 8 13 13 C 1.53044 * 109.32785 * 185.50026 * 12 10 9 14 14 C 1.53044 * 109.52670 * 61.37535 * 13 12 10 15 15 C 1.52998 * 109.49585 * 58.59142 * 14 13 12 16 16 C 1.52995 * 109.49629 * 178.68887 * 14 13 12 17 17 C 1.53189 * 109.31109 * 298.64197 * 14 13 12 18 18 N 1.46926 * 108.77518 * 54.63522 * 17 14 13 19 19 C 1.36939 * 120.63133 * 126.41572 * 18 17 14 20 20 H 1.07998 * 120.00038 * 212.22042 * 19 18 17 21 21 C 1.38812 * 120.00043 * 32.22124 * 19 18 17 22 22 N 1.31619 * 119.99798 * 12.62475 * 21 19 18 23 23 Si 1.86806 * 119.99939 * 192.62827 * 21 19 18 24 24 H 1.48500 * 109.46970 * 93.38574 * 23 21 19 25 25 H 1.48501 * 109.46826 * 213.39051 * 23 21 19 26 26 H 1.48504 * 109.46785 * 333.38574 * 23 21 19 27 27 C 1.54631 * 101.76297 * 334.58622 * 4 3 2 28 28 C 1.34424 * 124.34806 * 180.02562 * 2 1 3 29 29 O 1.21279 * 124.94070 * 359.60605 * 28 2 1 30 30 H 1.08999 * 109.47464 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47258 * 299.99974 * 1 2 3 32 32 H 1.08999 * 109.47281 * 59.99958 * 1 2 3 33 33 H 1.08998 * 110.24748 * 78.04172 * 3 2 1 34 34 H 1.09004 * 110.24725 * 316.03936 * 3 2 1 35 35 H 0.96995 * 119.99404 * 4.69748 * 8 6 4 36 36 H 1.08997 * 109.47164 * 62.69690 * 9 8 6 37 37 H 1.09000 * 109.47194 * 302.69227 * 9 8 6 38 38 H 1.08998 * 109.47828 * 65.55731 * 12 10 9 39 39 H 1.08997 * 109.50272 * 305.46361 * 12 10 9 40 40 H 1.09003 * 109.46062 * 301.35893 * 13 12 10 41 41 H 1.09000 * 109.45767 * 181.38641 * 13 12 10 42 42 H 1.09001 * 109.47027 * 59.99886 * 15 14 13 43 43 H 1.08998 * 109.47385 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.47377 * 300.00202 * 15 14 13 45 45 H 1.08995 * 109.46999 * 60.00298 * 16 14 13 46 46 H 1.09003 * 109.46481 * 180.02562 * 16 14 13 47 47 H 1.09000 * 109.47339 * 299.99885 * 16 14 13 48 48 H 1.09002 * 109.58764 * 174.42147 * 17 14 13 49 49 H 1.08999 * 109.58873 * 294.84860 * 17 14 13 50 50 H 0.97000 * 119.99281 * 180.02562 * 22 21 19 51 51 H 1.09002 * 110.48424 * 143.47817 * 27 4 3 52 52 H 1.09004 * 110.48459 * 266.11377 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 -0.4362 5 1 4.4758 1.3007 0.0955 6 6 3.8744 0.8818 -1.9273 7 8 3.0069 1.4045 -2.5945 8 7 4.9937 0.4201 -2.5194 9 6 5.2091 0.6407 -3.9516 10 6 6.5121 -0.0363 -4.3815 11 1 7.3462 0.3890 -3.8234 12 6 6.7350 0.1782 -5.8815 13 6 7.9647 -0.6152 -6.3294 14 6 7.7276 -2.1073 -6.0851 15 6 6.4857 -2.5599 -6.8556 16 6 8.9440 -2.9027 -6.5631 17 6 7.5158 -2.3480 -4.5871 18 7 6.4278 -1.4793 -4.1178 19 6 5.3557 -2.0044 -3.4468 20 1 4.3799 -1.5535 -3.5508 21 6 5.5233 -3.1163 -2.6328 22 7 6.7339 -3.5162 -2.3060 23 14 4.0305 -4.0450 -2.0014 24 1 3.7181 -5.1659 -2.9240 25 1 4.3187 -4.5836 -0.6478 26 1 2.8680 -3.1237 -1.9303 27 6 3.6897 -0.7379 -0.0110 28 6 2.2234 -1.1098 -0.0005 29 8 1.7945 -2.2442 0.0058 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.3310 1.6426 1.0004 34 1 1.8982 1.9385 -0.7099 35 1 5.6565 -0.0583 -1.9972 36 1 5.2735 1.7107 -4.1487 37 1 4.3769 0.2170 -4.5137 38 1 6.8951 1.2384 -6.0772 39 1 5.8596 -0.1658 -6.4324 40 1 8.8350 -0.2879 -5.7607 41 1 8.1398 -0.4446 -7.3916 42 1 6.6357 -2.3858 -7.9211 43 1 6.3169 -3.6225 -6.6809 44 1 5.6193 -1.9937 -6.5133 45 1 9.8279 -2.5806 -6.0127 46 1 8.7744 -3.9653 -6.3893 47 1 9.0960 -2.7289 -7.6284 48 1 7.2488 -3.3913 -4.4187 49 1 8.4318 -2.1111 -4.0458 50 1 6.8509 -4.2934 -1.7375 51 1 4.2324 -1.3458 -0.7350 52 1 4.1198 -0.8533 0.9840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089645967.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:59 Heat of formation + Delta-G solvation = -50.748500 kcal Electronic energy + Delta-G solvation = -32362.323268 eV Core-core repulsion = 28362.190530 eV Total energy + Delta-G solvation = -4000.132738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.58989 -39.04918 -38.27700 -35.99375 -35.05021 -33.23340 -32.91193 -31.92409 -29.99269 -27.83813 -27.43466 -26.61293 -26.44095 -25.47395 -23.90832 -22.42495 -22.08755 -20.14950 -19.57114 -19.30278 -17.90553 -17.42990 -16.55635 -16.29198 -15.63251 -15.48187 -15.18972 -15.04120 -14.38369 -14.08217 -13.87454 -13.77345 -13.45188 -13.38549 -13.33824 -13.27965 -12.92795 -12.53274 -12.42734 -12.18080 -12.13819 -12.01544 -11.64723 -11.52915 -11.38801 -11.35411 -11.21899 -11.11576 -10.76843 -10.68597 -10.56090 -10.36578 -10.10472 -9.96159 -9.78829 -9.51401 -9.48250 -9.36929 -9.22259 -8.58108 -8.53576 -8.23829 -6.62703 -5.82154 -3.31415 2.85707 3.05237 3.20362 3.46243 3.58752 3.69265 3.74715 4.45148 4.49994 4.56030 4.94106 5.10088 5.20822 5.30677 5.35112 5.40211 5.45108 5.47540 5.49932 5.58891 5.60905 5.73519 5.74868 5.78314 5.84403 5.90276 6.01683 6.08887 6.15640 6.16766 6.23009 6.32139 6.36121 6.44082 6.47130 6.47815 6.51970 6.64871 6.65704 6.90616 6.92706 7.00926 7.12225 7.13888 7.26753 7.38308 7.66515 7.81056 8.16976 8.42023 8.42566 8.76771 9.17747 9.78445 10.36685 11.22873 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.004527 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.325825 B = 6183.515651 C = 7365.778539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.624 5.624 3 C 0.120 3.880 4 C -0.124 4.124 5 H 0.122 0.878 6 C 0.515 3.485 7 O -0.558 6.558 8 N -0.688 5.688 9 C 0.135 3.865 10 C 0.161 3.839 11 H 0.031 0.969 12 C -0.130 4.130 13 C -0.095 4.095 14 C -0.095 4.095 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.189 3.811 18 N -0.584 5.584 19 C -0.252 4.252 20 H 0.067 0.933 21 C 0.014 3.986 22 N -0.897 5.897 23 Si 0.877 3.123 24 H -0.294 1.294 25 H -0.290 1.290 26 H -0.256 1.256 27 C -0.156 4.156 28 C 0.518 3.482 29 O -0.523 6.523 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.415 0.585 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.030 0.970 43 H 0.044 0.956 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.041 0.959 48 H 0.084 0.916 49 H 0.017 0.983 50 H 0.254 0.746 51 H 0.124 0.876 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 10.214 1.379 10.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.359 5.359 3 C -0.004 4.004 4 C -0.145 4.145 5 H 0.140 0.860 6 C 0.300 3.700 7 O -0.438 6.438 8 N -0.338 5.338 9 C 0.011 3.989 10 C 0.053 3.947 11 H 0.048 0.952 12 C -0.170 4.170 13 C -0.133 4.133 14 C -0.097 4.097 15 C -0.181 4.181 16 C -0.191 4.191 17 C 0.063 3.937 18 N -0.308 5.308 19 C -0.381 4.381 20 H 0.085 0.915 21 C -0.186 4.186 22 N -0.541 5.541 23 Si 0.706 3.294 24 H -0.222 1.222 25 H -0.217 1.217 26 H -0.180 1.180 27 C -0.196 4.196 28 C 0.306 3.694 29 O -0.399 6.399 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.253 0.747 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.102 0.898 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.142 0.858 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.730 9.851 1.035 10.055 hybrid contribution -0.341 -0.909 0.527 1.104 sum -2.071 8.942 1.562 9.310 Atomic orbital electron populations 1.21478 0.78390 1.03443 1.01142 1.48063 1.06371 1.07282 1.74231 1.21940 0.88972 0.87942 1.01534 1.22268 0.99170 0.97901 0.95187 0.86024 1.20030 0.82255 0.78700 0.89045 1.90634 1.41655 1.46080 1.65390 1.45909 1.21806 1.55523 1.10516 1.21288 0.98621 0.97839 0.81138 1.20720 0.93867 0.87051 0.93015 0.95173 1.22003 0.98802 0.98181 0.97995 1.21405 0.97337 0.95471 0.99059 1.21249 0.94297 0.93817 1.00330 1.21700 0.98534 1.00884 0.97024 1.21757 0.97880 1.00088 0.99406 1.20789 0.89761 0.96937 0.86210 1.44014 1.22996 0.99098 1.64647 1.19121 0.87802 1.11323 1.19863 0.91516 1.25062 0.95805 1.00427 0.97296 1.69997 1.19697 1.26455 1.37937 0.86713 0.83822 0.81140 0.77752 1.22159 1.21657 1.17952 1.22516 0.95634 0.95665 1.05776 1.20831 0.89218 0.84378 0.75008 1.90733 1.78507 1.20980 1.49659 0.90212 0.92409 0.92135 0.90750 0.88639 0.74733 0.92857 0.91519 0.93213 0.91670 0.92953 0.93705 0.95093 0.93667 0.91620 0.93340 0.93061 0.94009 0.89772 0.96467 0.93641 0.85803 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.22 11.14 59.84 0.67 1.89 16 2 N -0.62 -9.46 3.33 -180.29 -0.60 -10.07 16 3 C 0.12 1.47 6.72 -3.12 -0.02 1.45 16 4 C -0.12 -1.66 3.55 -90.14 -0.32 -1.98 16 5 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 6 C 0.51 8.82 7.15 -10.98 -0.08 8.74 16 7 O -0.56 -11.08 15.51 5.56 0.09 -10.99 16 8 N -0.69 -12.03 3.56 -60.29 -0.21 -12.25 16 9 C 0.14 2.39 4.45 -4.04 -0.02 2.37 16 10 C 0.16 2.90 3.00 -67.61 -0.20 2.70 16 11 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 12 C -0.13 -2.08 5.03 -26.62 -0.13 -2.21 16 13 C -0.10 -1.50 4.71 -26.69 -0.13 -1.63 16 14 C -0.10 -1.67 0.77 -154.39 -0.12 -1.79 16 15 C -0.12 -2.21 7.99 37.16 0.30 -1.92 16 16 C -0.13 -2.08 8.48 37.16 0.32 -1.77 16 17 C 0.19 4.05 3.93 -3.71 -0.01 4.04 16 18 N -0.58 -12.52 2.41 -164.79 -0.40 -12.92 16 19 C -0.25 -6.01 6.97 -15.06 -0.10 -6.12 16 20 H 0.07 1.69 5.92 -52.49 -0.31 1.38 16 21 C 0.01 0.35 4.99 -17.43 -0.09 0.27 16 22 N -0.90 -23.77 11.24 55.49 0.62 -23.14 16 23 Si 0.88 22.10 27.85 -169.99 -4.73 17.37 16 24 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 26 H -0.26 -6.67 5.74 56.52 0.32 -6.34 16 27 C -0.16 -2.49 6.36 -26.74 -0.17 -2.66 16 28 C 0.52 9.64 8.01 -10.86 -0.09 9.55 16 29 O -0.52 -11.87 15.73 5.56 0.09 -11.78 16 30 H 0.08 1.10 7.53 -51.93 -0.39 0.71 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.24 6.95 -51.93 -0.36 0.88 16 35 H 0.41 7.50 7.18 -40.82 -0.29 7.21 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.34 7.42 -51.93 -0.39 0.96 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.10 6.33 -51.93 -0.33 0.77 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.28 5.97 -51.93 -0.31 0.97 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 2.10 6.24 -51.93 -0.32 1.77 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 51 H 0.12 2.40 5.90 -51.93 -0.31 2.09 16 52 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -30.95 390.84 -8.45 -39.40 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.99 Total: 7.55 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -0.20 Total: 10.94 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.59 Total: -58.37 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.73 Total: 17.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.95 -8.45 -39.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089645967.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.350 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds