Wall clock time and date at job start Tue Mar 31 2020 19:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46768 * 124.35349 * 2 1 4 4 C 1.54480 * 105.47203 * 197.03406 * 3 2 1 5 5 H 1.09005 * 110.96856 * 92.70475 * 4 3 2 6 6 C 1.50705 * 110.99930 * 216.44596 * 4 3 2 7 7 O 1.21283 * 119.99663 * 3.36017 * 6 4 3 8 8 N 1.34770 * 119.99835 * 183.35271 * 6 4 3 9 9 C 1.46506 * 119.99717 * 184.10468 * 8 6 4 10 10 C 1.52999 * 109.46874 * 177.76175 * 9 8 6 11 11 H 1.09000 * 109.58502 * 59.43052 * 10 9 8 12 12 C 1.53196 * 109.58462 * 179.85472 * 10 9 8 13 13 C 1.53042 * 109.31251 * 174.42544 * 12 10 9 14 14 C 1.53045 * 109.53843 * 298.63438 * 13 12 10 15 15 C 1.53006 * 109.49470 * 301.41473 * 14 13 12 16 16 C 1.52996 * 109.50026 * 181.31810 * 14 13 12 17 17 C 1.53190 * 109.31070 * 61.36341 * 14 13 12 18 18 N 1.46924 * 109.59064 * 299.14131 * 10 9 8 19 19 C 1.36935 * 120.63018 * 6.63014 * 18 10 9 20 20 H 1.08005 * 119.99638 * 331.39762 * 19 18 10 21 21 C 1.38813 * 120.00517 * 151.39174 * 19 18 10 22 22 N 1.31621 * 119.99657 * 344.07147 * 21 19 18 23 23 Si 1.86795 * 120.00283 * 164.06261 * 21 19 18 24 24 H 1.48496 * 109.47093 * 3.98241 * 23 21 19 25 25 H 1.48498 * 109.47093 * 123.98316 * 23 21 19 26 26 H 1.48501 * 109.47283 * 243.98285 * 23 21 19 27 27 C 1.54625 * 101.76979 * 334.58401 * 4 3 2 28 28 C 1.34429 * 124.34711 * 180.02562 * 2 1 3 29 29 O 1.21277 * 124.94389 * 359.61493 * 28 2 1 30 30 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47303 * 299.95402 * 1 2 3 32 32 H 1.09005 * 109.46856 * 59.95315 * 1 2 3 33 33 H 1.09000 * 110.24385 * 78.03166 * 3 2 1 34 34 H 1.08997 * 110.24217 * 316.03563 * 3 2 1 35 35 H 0.97003 * 120.00554 * 4.11172 * 8 6 4 36 36 H 1.08991 * 109.47281 * 297.76213 * 9 8 6 37 37 H 1.09000 * 109.47218 * 57.76591 * 9 8 6 38 38 H 1.08996 * 109.49742 * 294.36871 * 12 10 9 39 39 H 1.08995 * 109.49744 * 54.47180 * 12 10 9 40 40 H 1.09002 * 109.46089 * 178.61695 * 13 12 10 41 41 H 1.09000 * 109.44973 * 58.64681 * 13 12 10 42 42 H 1.09004 * 109.46673 * 179.83561 * 15 14 13 43 43 H 1.08990 * 109.47060 * 299.83708 * 15 14 13 44 44 H 1.08997 * 109.46994 * 59.83529 * 15 14 13 45 45 H 1.09008 * 109.46860 * 300.16316 * 16 14 13 46 46 H 1.08993 * 109.47212 * 60.15909 * 16 14 13 47 47 H 1.08996 * 109.47209 * 180.16349 * 16 14 13 48 48 H 1.09006 * 109.58763 * 185.57593 * 17 14 13 49 49 H 1.09001 * 109.58729 * 65.15887 * 17 14 13 50 50 H 0.97003 * 120.00143 * 179.97438 * 22 21 19 51 51 H 1.08994 * 110.48755 * 143.47767 * 27 4 3 52 52 H 1.09005 * 110.48372 * 266.12524 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7009 0.7486 -0.4361 5 1 3.8265 0.8449 -1.5146 6 6 4.7724 1.5120 0.2990 7 8 4.4659 2.3171 1.1527 8 7 6.0710 1.2998 0.0078 9 6 7.1152 1.9743 0.7832 10 6 8.4904 1.5208 0.2893 11 1 8.5977 1.7646 -0.7677 12 6 9.5845 2.2273 1.0959 13 6 10.9510 1.6678 0.6939 14 6 11.0056 0.1719 1.0128 15 6 10.7559 -0.0410 2.5072 16 6 12.3834 -0.3796 0.6409 17 6 9.9276 -0.5578 0.2052 18 7 8.6273 0.0699 0.4765 19 6 7.5629 -0.6829 0.8953 20 1 6.7971 -0.2384 1.5137 21 6 7.4681 -2.0174 0.5252 22 7 8.2046 -2.4802 -0.4627 23 14 6.2956 -3.1565 1.4291 24 1 5.5183 -2.3771 2.4258 25 1 5.3652 -3.7828 0.4558 26 1 7.0711 -4.2151 2.1242 27 6 3.6898 -0.7380 -0.0108 28 6 2.2234 -1.1099 -0.0005 29 8 1.7946 -2.2443 0.0057 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5131 0.8904 32 1 -0.3633 0.5146 -0.8896 33 1 2.3309 1.6427 1.0004 34 1 1.8983 1.9384 -0.7099 35 1 6.3145 0.7006 -0.7151 36 1 7.0216 3.0529 0.6575 37 1 7.0060 1.7205 1.8376 38 1 9.5547 3.2973 0.8901 39 1 9.4200 2.0563 2.1597 40 1 11.7332 2.1861 1.2486 41 1 11.1041 1.8170 -0.3750 42 1 10.7920 -1.1067 2.7333 43 1 11.5230 0.4784 3.0813 44 1 9.7748 0.3535 2.7715 45 1 12.5609 -0.2261 -0.4236 46 1 13.1499 0.1400 1.2157 47 1 12.4208 -1.4455 0.8655 48 1 9.8962 -1.6064 0.5015 49 1 10.1547 -0.4834 -0.8583 50 1 8.1387 -3.4128 -0.7212 51 1 4.2324 -1.3459 -0.7347 52 1 4.1197 -0.8533 0.9842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089645968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:03 Heat of formation + Delta-G solvation = -52.245156 kcal Electronic energy + Delta-G solvation = -31862.394170 eV Core-core repulsion = 27862.196532 eV Total energy + Delta-G solvation = -4000.197638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.60958 -39.18622 -38.39875 -36.14645 -35.11874 -33.28341 -32.95427 -32.01862 -30.02076 -27.99431 -27.46892 -26.64078 -26.55791 -25.52280 -23.91085 -22.44381 -22.09416 -20.17928 -19.70320 -19.36155 -17.93781 -17.41734 -16.74959 -16.33896 -15.72351 -15.54213 -15.34939 -14.96871 -14.51738 -14.14288 -13.93824 -13.81582 -13.67410 -13.40593 -13.34481 -13.26390 -13.09998 -12.71358 -12.47234 -12.37758 -12.27198 -12.16915 -11.70815 -11.48106 -11.40718 -11.27399 -11.21344 -11.13346 -10.83169 -10.81827 -10.60595 -10.41851 -10.14205 -10.08039 -9.87617 -9.83161 -9.50526 -9.39846 -9.24943 -8.70386 -8.62621 -8.31503 -6.72224 -5.87733 -3.31348 2.67997 2.95230 3.01210 3.33013 3.42610 3.48022 3.67117 4.37493 4.40055 4.54711 4.93729 5.00194 5.14942 5.23613 5.26954 5.29447 5.39405 5.42420 5.44510 5.50653 5.58496 5.62010 5.71724 5.74667 5.83361 5.98095 5.98846 6.04941 6.07301 6.13870 6.20515 6.29341 6.33183 6.41465 6.44599 6.45433 6.48683 6.49497 6.62459 6.87942 6.89236 6.96943 7.07631 7.08731 7.09710 7.35461 7.64004 7.75112 8.10126 8.23709 8.35110 8.69089 9.12044 9.74750 10.31491 11.18798 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.004052 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.116180 B = 6907.903107 C = 8241.334474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.119 3.881 4 C -0.120 4.120 5 H 0.113 0.887 6 C 0.521 3.479 7 O -0.559 6.559 8 N -0.687 5.687 9 C 0.134 3.866 10 C 0.161 3.839 11 H 0.031 0.969 12 C -0.130 4.130 13 C -0.096 4.096 14 C -0.095 4.095 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.186 3.814 18 N -0.585 5.585 19 C -0.250 4.250 20 H 0.071 0.929 21 C 0.012 3.988 22 N -0.896 5.896 23 Si 0.877 3.123 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.290 1.290 27 C -0.143 4.143 28 C 0.521 3.479 29 O -0.532 6.532 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.416 0.584 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.050 0.950 48 H 0.088 0.912 49 H 0.016 0.984 50 H 0.254 0.746 51 H 0.116 0.884 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 9.138 -1.415 9.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.363 5.363 3 C -0.004 4.004 4 C -0.142 4.142 5 H 0.131 0.869 6 C 0.305 3.695 7 O -0.440 6.440 8 N -0.336 5.336 9 C 0.010 3.990 10 C 0.054 3.946 11 H 0.049 0.951 12 C -0.170 4.170 13 C -0.133 4.133 14 C -0.097 4.097 15 C -0.182 4.182 16 C -0.191 4.191 17 C 0.060 3.940 18 N -0.308 5.308 19 C -0.379 4.379 20 H 0.088 0.912 21 C -0.187 4.187 22 N -0.540 5.540 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.217 1.217 27 C -0.184 4.184 28 C 0.309 3.691 29 O -0.409 6.409 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.253 0.747 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.107 0.893 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.135 0.865 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.734 8.921 -0.881 9.711 hybrid contribution -0.327 -1.020 0.125 1.078 sum -4.061 7.901 -0.756 8.915 Atomic orbital electron populations 1.21523 0.78224 1.03578 1.01368 1.48204 1.06465 1.07512 1.74085 1.21973 0.88133 0.86578 1.03740 1.22159 0.94333 0.95521 1.02219 0.86908 1.19859 0.83731 0.82520 0.83359 1.90648 1.82486 1.36475 1.34352 1.45930 1.04414 1.46724 1.36578 1.21330 0.86609 0.94707 0.96367 1.20719 0.91020 0.86800 0.96104 0.95127 1.22005 0.95915 0.97953 1.01091 1.21411 0.96106 0.95804 1.00013 1.21243 0.96193 0.95251 0.96979 1.21702 1.01026 1.00565 0.94864 1.21756 0.96434 1.00551 1.00400 1.20835 0.81480 0.97409 0.94234 1.44057 1.07757 1.00422 1.78600 1.19196 1.01957 0.92272 1.24480 0.91163 1.24925 0.98643 0.98529 0.96606 1.70007 1.42541 1.14682 1.26793 0.86666 0.80829 0.81806 0.80035 1.20253 1.20879 1.21677 1.22360 0.94588 0.95068 1.06363 1.20938 0.89235 0.84286 0.74660 1.90709 1.78586 1.21128 1.50464 0.90036 0.92131 0.92148 0.88950 0.90080 0.74690 0.92629 0.91430 0.93164 0.91619 0.93676 0.92958 0.93652 0.95082 0.91583 0.93349 0.93990 0.93042 0.89348 0.96543 0.93610 0.86528 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 11.14 59.84 0.67 1.66 16 2 N -0.63 -8.50 3.33 -180.28 -0.60 -9.11 16 3 C 0.12 1.46 6.74 -3.12 -0.02 1.44 16 4 C -0.12 -1.63 3.54 -90.14 -0.32 -1.95 16 5 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 6 C 0.52 8.43 7.05 -10.99 -0.08 8.35 16 7 O -0.56 -10.42 15.50 5.56 0.09 -10.34 16 8 N -0.69 -11.42 3.76 -60.29 -0.23 -11.64 16 9 C 0.13 2.26 4.42 -4.04 -0.02 2.24 16 10 C 0.16 2.80 3.00 -67.60 -0.20 2.60 16 11 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 12 C -0.13 -2.01 5.03 -26.61 -0.13 -2.14 16 13 C -0.10 -1.47 4.71 -26.69 -0.13 -1.60 16 14 C -0.09 -1.63 0.77 -154.39 -0.12 -1.74 16 15 C -0.12 -2.14 7.99 37.16 0.30 -1.85 16 16 C -0.13 -2.04 8.48 37.16 0.32 -1.73 16 17 C 0.19 3.90 3.97 -3.71 -0.01 3.88 16 18 N -0.59 -12.12 2.43 -164.77 -0.40 -12.52 16 19 C -0.25 -5.69 7.17 -15.06 -0.11 -5.80 16 20 H 0.07 1.65 5.74 -52.48 -0.30 1.35 16 21 C 0.01 0.30 4.94 -17.43 -0.09 0.22 16 22 N -0.90 -23.16 11.16 55.49 0.62 -22.54 16 23 Si 0.88 20.64 29.11 -169.99 -4.95 15.69 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C -0.14 -2.33 6.41 -26.74 -0.17 -2.51 16 28 C 0.52 8.87 8.02 -10.85 -0.09 8.79 16 29 O -0.53 -10.99 17.35 5.56 0.10 -10.89 16 30 H 0.08 0.93 7.53 -51.93 -0.39 0.54 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.25 6.92 -51.93 -0.36 0.90 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.42 7.17 7.56 -40.82 -0.31 6.86 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.27 7.40 -51.93 -0.38 0.89 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 1.23 5.97 -51.93 -0.31 0.92 16 45 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 2.15 6.06 -51.93 -0.31 1.83 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 51 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 52 H 0.11 2.04 7.41 -51.93 -0.38 1.66 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -28.75 396.85 -8.58 -37.33 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.98 Total: 8.18 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -0.21 Total: 9.85 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.61 Total: -55.81 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.18 Total: -21.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.95 Total: 15.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.75 -8.58 -37.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089645968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.913 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds