Wall clock time and date at job start Tue Mar 31 2020 19:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46822 * 124.33286 * 2 1 4 4 C 1.54477 * 105.44296 * 197.00275 * 3 2 1 5 5 H 1.09001 * 110.97499 * 92.76766 * 4 3 2 6 6 C 1.50698 * 110.96812 * 216.49340 * 4 3 2 7 7 O 1.21275 * 120.00328 * 356.90830 * 6 4 3 8 8 N 1.34785 * 119.99918 * 176.90662 * 6 4 3 9 9 C 1.46497 * 120.00019 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47231 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.69536 * 299.77636 * 10 9 8 12 12 C 1.52754 * 109.51061 * 179.65828 * 10 9 8 13 13 C 1.53043 * 109.38482 * 185.70191 * 12 10 9 14 14 C 1.53045 * 109.53562 * 61.23991 * 13 12 10 15 15 C 1.52997 * 109.49704 * 178.68401 * 14 13 12 16 16 C 1.53001 * 109.49635 * 58.58427 * 14 13 12 17 17 C 1.53196 * 109.31269 * 298.63578 * 14 13 12 18 18 N 1.46927 * 109.58527 * 60.12886 * 10 9 8 19 19 C 1.36931 * 120.63329 * 353.41846 * 18 10 9 20 20 H 1.08000 * 119.99861 * 49.22235 * 19 18 10 21 21 C 1.38811 * 120.00341 * 229.21816 * 19 18 10 22 22 N 1.31623 * 120.00060 * 188.54996 * 21 19 18 23 23 Si 1.86804 * 119.99920 * 8.54733 * 21 19 18 24 24 H 1.48501 * 109.46784 * 84.40480 * 23 21 19 25 25 H 1.48496 * 109.46937 * 324.40873 * 23 21 19 26 26 H 1.48497 * 109.47261 * 204.40460 * 23 21 19 27 27 C 1.54632 * 101.79808 * 334.62928 * 4 3 2 28 28 C 1.34414 * 124.34605 * 180.02562 * 2 1 3 29 29 O 1.21277 * 124.94795 * 359.62054 * 28 2 1 30 30 H 1.08994 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46950 * 299.93357 * 1 2 3 32 32 H 1.08998 * 109.47013 * 59.93392 * 1 2 3 33 33 H 1.09001 * 110.23793 * 78.02229 * 3 2 1 34 34 H 1.09005 * 110.28381 * 316.00085 * 3 2 1 35 35 H 0.97003 * 119.99785 * 0.02562 * 8 6 4 36 36 H 1.08995 * 109.47250 * 60.00216 * 9 8 6 37 37 H 1.09009 * 109.47147 * 299.99975 * 9 8 6 38 38 H 1.08999 * 109.56632 * 65.67168 * 12 10 9 39 39 H 1.08997 * 109.38577 * 305.62993 * 12 10 9 40 40 H 1.08993 * 109.46013 * 301.22147 * 13 12 10 41 41 H 1.08994 * 109.46335 * 181.25637 * 13 12 10 42 42 H 1.09004 * 109.47067 * 179.83422 * 15 14 13 43 43 H 1.09000 * 109.47467 * 299.83919 * 15 14 13 44 44 H 1.09002 * 109.47105 * 59.83920 * 15 14 13 45 45 H 1.09000 * 109.47326 * 300.16269 * 16 14 13 46 46 H 1.09007 * 109.46643 * 60.16513 * 16 14 13 47 47 H 1.08997 * 109.46831 * 180.15873 * 16 14 13 48 48 H 1.08996 * 109.58343 * 294.85075 * 17 14 13 49 49 H 1.08997 * 109.58674 * 174.42157 * 17 14 13 50 50 H 0.96999 * 119.99487 * 179.97438 * 22 21 19 51 51 H 1.09001 * 110.48670 * 143.46088 * 27 4 3 52 52 H 1.09000 * 110.48492 * 266.09973 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7010 0.7490 -0.4354 5 1 3.8275 0.8458 -1.5137 6 6 4.7716 1.5121 0.3010 7 8 4.4648 2.3988 1.0694 8 7 6.0704 1.2092 0.1057 9 6 7.1112 1.9506 0.8220 10 6 8.4869 1.4133 0.4224 11 1 8.5579 0.3567 0.6807 12 6 9.5733 2.1916 1.1623 13 6 10.9485 1.7504 0.6561 14 6 11.0659 2.0565 -0.8389 15 6 12.4528 1.6452 -1.3370 16 6 10.8629 3.5551 -1.0707 17 6 9.9947 1.2713 -1.6024 18 7 8.6797 1.5806 -1.0246 19 6 7.6550 2.0218 -1.8186 20 1 7.0939 2.9007 -1.5373 21 6 7.3375 1.3395 -2.9850 22 7 6.4706 1.8524 -3.8322 23 14 8.1406 -0.3066 -3.3522 24 1 7.3875 -1.3883 -2.6682 25 1 9.5425 -0.2936 -2.8626 26 1 8.1303 -0.5465 -4.8176 27 6 3.6898 -0.7378 -0.0108 28 6 2.2234 -1.1098 -0.0005 29 8 1.7946 -2.2442 0.0056 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5128 0.8906 32 1 -0.3633 0.5149 -0.8894 33 1 2.3305 1.6435 1.0005 34 1 1.8989 1.9393 -0.7102 35 1 6.3159 0.5002 -0.5091 36 1 6.9709 1.8281 1.8959 37 1 7.0460 3.0081 0.5654 38 1 9.4991 1.9947 2.2318 39 1 9.4430 3.2580 0.9788 40 1 11.0685 0.6792 0.8179 41 1 11.7252 2.2888 1.1990 42 1 12.5349 1.8606 -2.4024 43 1 13.2146 2.2040 -0.7935 44 1 12.5970 0.5777 -1.1701 45 1 9.8751 3.8475 -0.7143 46 1 11.6253 4.1133 -0.5272 47 1 10.9437 3.7722 -2.1358 48 1 10.1912 0.2029 -1.5125 49 1 10.0092 1.5605 -2.6532 50 1 6.2490 1.3757 -4.6474 51 1 4.2326 -1.3454 -0.7349 52 1 4.1196 -0.8536 0.9842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089645969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:06 Heat of formation + Delta-G solvation = -48.512131 kcal Electronic energy + Delta-G solvation = -31623.037844 eV Core-core repulsion = 27623.002082 eV Total energy + Delta-G solvation = -4000.035762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.58588 -39.29616 -38.49285 -36.16345 -35.16948 -33.23149 -32.92384 -32.09069 -30.87077 -28.03246 -27.49968 -26.82163 -26.60651 -25.60188 -23.96122 -22.65012 -22.18652 -20.16796 -19.61857 -19.33806 -18.43401 -17.32620 -16.77416 -16.45028 -15.58181 -15.52439 -15.43972 -15.06138 -14.85111 -14.31243 -14.15387 -13.87939 -13.71915 -13.53259 -13.43436 -13.33891 -12.99577 -12.86141 -12.54612 -12.38989 -12.35339 -12.19120 -11.87900 -11.64832 -11.57911 -11.40742 -11.33718 -11.19496 -11.11256 -10.92045 -10.80610 -10.65322 -10.41896 -9.96740 -9.92598 -9.76215 -9.64612 -9.36915 -9.24859 -8.70503 -8.61126 -8.24997 -6.69120 -6.08787 -3.70571 2.61270 2.98223 3.15320 3.23164 3.36070 3.40050 3.76723 4.38593 4.40667 4.51748 4.80587 5.02212 5.05082 5.11215 5.20150 5.25336 5.30264 5.31032 5.33968 5.52312 5.57256 5.58334 5.63133 5.69635 5.70822 5.82749 5.86272 5.93986 5.98874 6.02887 6.11392 6.13844 6.18877 6.27136 6.28614 6.30779 6.35504 6.48025 6.48865 6.55778 6.68029 6.71830 6.82226 6.89132 7.05757 7.07548 7.14830 7.98957 8.17461 8.21612 8.36169 8.81711 8.84534 9.54999 10.04322 11.03708 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.003637 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.784862 B = 7696.245331 C = 8429.979141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.624 5.624 3 C 0.119 3.881 4 C -0.122 4.122 5 H 0.125 0.875 6 C 0.527 3.473 7 O -0.562 6.562 8 N -0.682 5.682 9 C 0.139 3.861 10 C 0.160 3.840 11 H 0.035 0.965 12 C -0.131 4.131 13 C -0.096 4.096 14 C -0.089 4.089 15 C -0.138 4.138 16 C -0.126 4.126 17 C 0.151 3.849 18 N -0.601 5.601 19 C -0.261 4.261 20 H 0.077 0.923 21 C 0.044 3.956 22 N -0.902 5.902 23 Si 0.843 3.157 24 H -0.285 1.285 25 H -0.236 1.236 26 H -0.301 1.301 27 C -0.145 4.145 28 C 0.522 3.478 29 O -0.539 6.539 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.411 0.589 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.034 0.966 47 H 0.046 0.954 48 H 0.030 0.970 49 H 0.064 0.936 50 H 0.263 0.737 51 H 0.110 0.890 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 -1.173 7.576 7.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.358 5.358 3 C -0.004 4.004 4 C -0.144 4.144 5 H 0.143 0.857 6 C 0.312 3.688 7 O -0.443 6.443 8 N -0.331 5.331 9 C 0.015 3.985 10 C 0.053 3.947 11 H 0.052 0.948 12 C -0.170 4.170 13 C -0.134 4.134 14 C -0.091 4.091 15 C -0.195 4.195 16 C -0.183 4.183 17 C 0.026 3.974 18 N -0.327 5.327 19 C -0.390 4.390 20 H 0.094 0.906 21 C -0.157 4.157 22 N -0.542 5.542 23 Si 0.671 3.329 24 H -0.212 1.212 25 H -0.161 1.161 26 H -0.228 1.228 27 C -0.185 4.185 28 C 0.310 3.690 29 O -0.417 6.417 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.248 0.752 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.128 0.872 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.063 -1.157 7.939 8.023 hybrid contribution 0.555 -1.082 -0.955 1.546 sum 0.493 -2.239 6.984 7.351 Atomic orbital electron populations 1.21543 0.78149 1.03505 1.01592 1.48221 1.06580 1.07632 1.73373 1.22004 0.88249 0.86435 1.03688 1.22222 0.94221 0.94448 1.03534 0.85733 1.19754 0.83633 0.83569 0.81856 1.90634 1.82509 1.32620 1.38508 1.45822 1.04444 1.38084 1.44764 1.21221 0.86160 0.97136 0.93987 1.20758 0.91732 0.96239 0.85937 0.94784 1.21918 0.95447 1.01352 0.98310 1.21413 0.96481 1.00146 0.95369 1.21126 0.95340 0.97016 0.95591 1.21812 0.96497 1.00480 1.00758 1.21717 1.01572 0.94333 1.00710 1.21733 0.84325 0.95140 0.96232 1.44312 1.07805 1.78592 1.01954 1.18642 1.09085 1.08099 1.03164 0.90594 1.25724 0.95463 0.97175 0.97373 1.69783 1.34599 1.38813 1.11006 0.87724 0.82852 0.85491 0.76814 1.21177 1.16071 1.22764 1.22328 0.95015 0.96002 1.05175 1.20836 0.89183 0.84273 0.74736 1.90697 1.78704 1.21142 1.51131 0.90077 0.92056 0.91959 0.89093 0.89736 0.75236 0.92645 0.91307 0.92738 0.91304 0.92847 0.93154 0.92991 0.93430 0.93316 0.91259 0.94655 0.93449 0.95234 0.91787 0.92673 0.87176 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 11.14 59.85 0.67 1.65 16 2 N -0.62 -8.39 3.33 -180.24 -0.60 -8.99 16 3 C 0.12 1.60 6.69 -3.09 -0.02 1.57 16 4 C -0.12 -1.83 3.54 -90.14 -0.32 -2.15 16 5 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 6 C 0.53 9.20 7.06 -10.98 -0.08 9.12 16 7 O -0.56 -11.09 15.53 5.56 0.09 -11.00 16 8 N -0.68 -11.99 4.12 -60.29 -0.25 -12.24 16 9 C 0.14 2.37 4.49 -4.04 -0.02 2.35 16 10 C 0.16 2.64 2.99 -67.82 -0.20 2.44 16 11 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 12 C -0.13 -1.88 5.00 -26.84 -0.13 -2.01 16 13 C -0.10 -1.34 4.71 -26.69 -0.13 -1.46 16 14 C -0.09 -1.37 0.77 -154.38 -0.12 -1.49 16 15 C -0.14 -1.84 8.48 37.16 0.32 -1.53 16 16 C -0.13 -1.99 7.99 37.16 0.30 -1.69 16 17 C 0.15 2.80 2.70 -3.71 -0.01 2.79 16 18 N -0.60 -11.68 1.85 -165.03 -0.31 -11.98 16 19 C -0.26 -5.99 6.60 -15.06 -0.10 -6.09 16 20 H 0.08 2.02 7.09 -52.49 -0.37 1.64 16 21 C 0.04 1.09 5.29 -17.43 -0.09 0.99 16 22 N -0.90 -24.23 13.97 55.49 0.78 -23.46 16 23 Si 0.84 18.68 26.63 -169.99 -4.53 14.15 16 24 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.24 -4.85 3.87 56.52 0.22 -4.63 16 26 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 27 C -0.14 -2.02 6.40 -26.74 -0.17 -2.20 16 28 C 0.52 8.12 8.02 -10.86 -0.09 8.03 16 29 O -0.54 -10.04 17.35 5.56 0.10 -9.94 16 30 H 0.08 0.90 7.53 -51.93 -0.39 0.51 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.27 7.01 -51.93 -0.36 0.91 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.41 7.51 7.33 -40.82 -0.30 7.21 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.33 7.47 -51.92 -0.39 0.94 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.05 6.33 -51.93 -0.33 0.72 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.22 5.97 -51.93 -0.31 0.91 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.03 0.56 6.36 -51.93 -0.33 0.23 16 49 H 0.06 1.32 6.50 -51.93 -0.34 0.99 16 50 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 51 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 52 H 0.11 1.39 7.89 -51.93 -0.41 0.98 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -28.80 392.68 -8.19 -36.99 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -9.19 Total: 10.22 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.20 Total: 10.33 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.38 Total: -56.67 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.18 Total: -20.94 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.53 Total: 14.15 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.80 -8.19 -36.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089645969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.518 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds