Wall clock time and date at job start Tue Mar 31 2020 19:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46765 * 124.34602 * 2 1 4 4 C 1.54479 * 105.47518 * 197.01547 * 3 2 1 5 5 C 1.54627 * 101.76387 * 334.58694 * 4 3 2 6 6 H 1.09006 * 110.48933 * 266.11936 * 5 4 3 7 7 C 1.50704 * 110.49070 * 143.60706 * 5 4 3 8 8 O 1.21285 * 119.99348 * 359.97438 * 7 5 4 9 9 N 1.34769 * 120.00272 * 180.02562 * 7 5 4 10 10 C 1.46502 * 119.99989 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46984 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.59168 * 300.92280 * 11 10 9 13 13 C 1.53199 * 109.58484 * 180.63771 * 11 10 9 14 14 C 1.53041 * 109.31183 * 185.57903 * 13 11 10 15 15 C 1.53044 * 109.53789 * 61.36779 * 14 13 11 16 16 C 1.52997 * 109.49820 * 58.58394 * 15 14 13 17 17 C 1.52997 * 109.49556 * 178.68388 * 15 14 13 18 18 C 1.53191 * 109.31357 * 298.63433 * 15 14 13 19 19 N 1.46927 * 108.77488 * 54.63457 * 18 15 14 20 20 C 1.36940 * 120.63231 * 126.39517 * 19 18 15 21 21 H 1.07997 * 119.99647 * 210.09384 * 20 19 18 22 22 C 1.38811 * 119.99830 * 30.08909 * 20 19 18 23 23 N 1.31621 * 120.00283 * 13.58392 * 22 20 19 24 24 Si 1.86798 * 119.99900 * 193.58115 * 22 20 19 25 25 H 1.48501 * 109.47393 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46970 * 120.00091 * 24 22 20 27 27 H 1.48508 * 109.47260 * 240.00105 * 24 22 20 28 28 C 1.34419 * 124.35460 * 179.70013 * 2 1 3 29 29 O 1.21287 * 124.93910 * 359.57798 * 28 2 1 30 30 H 1.09004 * 109.46838 * 90.00119 * 1 2 3 31 31 H 1.09002 * 109.46539 * 209.99262 * 1 2 3 32 32 H 1.08995 * 109.47347 * 329.99697 * 1 2 3 33 33 H 1.08995 * 110.24822 * 316.01575 * 3 2 1 34 34 H 1.09002 * 110.24467 * 77.92816 * 3 2 1 35 35 H 1.08995 * 110.96913 * 92.70346 * 4 3 2 36 36 H 1.08998 * 110.97028 * 216.43189 * 4 3 2 37 37 H 0.97000 * 120.00379 * 359.97438 * 9 7 5 38 38 H 1.08996 * 109.46910 * 299.99501 * 10 9 7 39 39 H 1.09000 * 109.47478 * 59.99909 * 10 9 7 40 40 H 1.08994 * 109.49589 * 305.53480 * 13 11 10 41 41 H 1.08999 * 109.49090 * 65.62829 * 13 11 10 42 42 H 1.08996 * 109.46053 * 181.38722 * 14 13 11 43 43 H 1.08994 * 109.45931 * 301.34869 * 14 13 11 44 44 H 1.09005 * 109.47130 * 59.99915 * 16 15 14 45 45 H 1.08998 * 109.47270 * 180.02562 * 16 15 14 46 46 H 1.08999 * 109.47570 * 300.00219 * 16 15 14 47 47 H 1.08995 * 109.47191 * 59.99933 * 17 15 14 48 48 H 1.09000 * 109.46950 * 179.97438 * 17 15 14 49 49 H 1.09007 * 109.47055 * 299.99629 * 17 15 14 50 50 H 1.08998 * 109.58924 * 174.42180 * 18 15 14 51 51 H 1.09001 * 109.58538 * 294.70682 * 18 15 14 52 52 H 0.96995 * 120.00130 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7010 0.7489 -0.4357 5 6 3.6898 -0.7376 -0.0101 6 1 4.1195 -0.8529 0.9850 7 6 4.4432 -1.5779 -1.0089 8 8 4.9501 -1.0569 -1.9797 9 7 4.5526 -2.9084 -0.8239 10 6 5.2854 -3.7251 -1.7946 11 6 5.2597 -5.1894 -1.3516 12 1 5.7137 -5.2808 -0.3650 13 6 6.0389 -6.0437 -2.3566 14 6 5.8929 -7.5212 -1.9854 15 6 4.4175 -7.9223 -2.0521 16 6 3.8821 -7.6668 -3.4623 17 6 4.2763 -9.4075 -1.7127 18 6 3.6199 -7.0894 -1.0437 19 7 3.8703 -5.6652 -1.3037 20 6 2.8287 -4.7975 -1.4975 21 1 2.9565 -3.9339 -2.1332 22 6 1.6087 -5.0282 -0.8769 23 7 1.5214 -5.9109 0.0956 24 14 0.0907 -4.0859 -1.4218 25 1 0.4522 -3.1602 -2.5253 26 1 -0.9415 -5.0421 -1.8968 27 1 -0.4458 -3.3067 -0.2771 28 6 2.2235 -1.1097 0.0058 29 8 1.7947 -2.2442 0.0191 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5137 32 1 -0.3634 0.8899 0.5138 33 1 1.8984 1.9383 -0.7101 34 1 2.3292 1.6438 1.0001 35 1 3.8268 0.8450 -1.5140 36 1 4.4753 1.3017 0.0962 37 1 4.1468 -3.3251 -0.0476 38 1 4.8164 -3.6332 -2.7742 39 1 6.3182 -3.3815 -1.8524 40 1 5.6422 -5.8793 -3.3584 41 1 7.0922 -5.7645 -2.3316 42 1 6.4666 -8.1296 -2.6844 43 1 6.2671 -7.6801 -0.9741 44 1 4.4518 -8.2575 -4.1798 45 1 2.8312 -7.9523 -3.5093 46 1 3.9818 -6.6084 -3.7027 47 1 4.6567 -9.5882 -0.7074 48 1 3.2253 -9.6926 -1.7599 49 1 4.8463 -9.9996 -2.4288 50 1 2.5563 -7.2998 -1.1560 51 1 3.9370 -7.3395 -0.0313 52 1 0.6690 -6.0718 0.5295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089680717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:35 Heat of formation + Delta-G solvation = -40.684106 kcal Electronic energy + Delta-G solvation = -32572.339111 eV Core-core repulsion = 28572.642798 eV Total energy + Delta-G solvation = -3999.696313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.55480 -38.89074 -38.09523 -36.10819 -34.94848 -33.02282 -32.68321 -31.94304 -29.79427 -28.36042 -26.92319 -26.55438 -26.51101 -25.28689 -23.55363 -22.18202 -21.79230 -20.22848 -19.98151 -18.97869 -17.78592 -17.20391 -16.70926 -16.09096 -15.85550 -15.37381 -15.26441 -14.77300 -14.07794 -13.96526 -13.77050 -13.64876 -13.59182 -13.28180 -13.21245 -12.97425 -12.82763 -12.63557 -12.40078 -12.22885 -12.09835 -11.99715 -11.69483 -11.49855 -11.30859 -11.13820 -11.05725 -10.98048 -10.64003 -10.57566 -10.42053 -10.23341 -9.99322 -9.88175 -9.67525 -9.49877 -9.33455 -9.19824 -9.10299 -8.51282 -8.35976 -8.06220 -6.44297 -5.59003 -3.03813 2.70839 3.08105 3.35260 3.60507 3.69011 3.70220 3.88850 4.43706 4.57421 4.75430 4.95562 5.07900 5.29506 5.31771 5.37027 5.37825 5.47498 5.54768 5.58598 5.61742 5.64627 5.78589 5.82550 5.84378 5.86732 5.96472 6.11117 6.14318 6.17555 6.24395 6.30994 6.40789 6.44871 6.53173 6.55485 6.55776 6.60358 6.67577 6.73379 6.99922 7.02629 7.11256 7.21728 7.24826 7.26376 7.50484 7.81648 8.05607 8.30067 8.53624 8.62875 8.87465 9.40979 10.03264 10.57721 11.48500 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.004790 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.440214 B = 5844.042942 C = 7217.532771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.631 5.631 3 C 0.105 3.895 4 C -0.115 4.115 5 C -0.146 4.146 6 H 0.126 0.874 7 C 0.524 3.476 8 O -0.563 6.563 9 N -0.678 5.678 10 C 0.135 3.865 11 C 0.160 3.840 12 H 0.028 0.972 13 C -0.130 4.130 14 C -0.095 4.095 15 C -0.095 4.095 16 C -0.123 4.123 17 C -0.133 4.133 18 C 0.188 3.812 19 N -0.584 5.584 20 C -0.247 4.247 21 H 0.065 0.935 22 C 0.035 3.965 23 N -0.903 5.903 24 Si 0.921 3.079 25 H -0.292 1.292 26 H -0.314 1.314 27 H -0.286 1.286 28 C 0.509 3.491 29 O -0.460 6.460 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.420 0.580 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.029 0.971 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.047 0.953 48 H 0.050 0.950 49 H 0.040 0.960 50 H 0.088 0.912 51 H 0.014 0.986 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 8.571 1.244 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.369 5.369 3 C -0.018 4.018 4 C -0.153 4.153 5 C -0.170 4.170 6 H 0.144 0.856 7 C 0.308 3.692 8 O -0.444 6.444 9 N -0.327 5.327 10 C 0.011 3.989 11 C 0.053 3.947 12 H 0.045 0.955 13 C -0.169 4.169 14 C -0.132 4.132 15 C -0.097 4.097 16 C -0.181 4.181 17 C -0.191 4.191 18 C 0.063 3.937 19 N -0.307 5.307 20 C -0.376 4.376 21 H 0.083 0.917 22 C -0.164 4.164 23 N -0.548 5.548 24 Si 0.756 3.244 25 H -0.218 1.218 26 H -0.244 1.244 27 H -0.213 1.213 28 C 0.294 3.706 29 O -0.330 6.330 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.259 0.741 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.106 0.894 51 H 0.032 0.968 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.490 8.238 0.686 9.407 hybrid contribution -1.158 0.354 0.210 1.228 sum 3.332 8.591 0.896 9.258 Atomic orbital electron populations 1.21509 0.78222 1.02896 1.01702 1.48062 1.06215 1.07163 1.75415 1.22064 0.90793 0.87623 1.01321 1.22539 0.95909 0.92462 1.04393 1.22080 0.95618 0.97285 1.02057 0.85618 1.19601 0.80565 0.83045 0.86001 1.90625 1.50009 1.72837 1.30881 1.45969 1.53003 1.05839 1.27922 1.21305 0.94259 0.90277 0.93093 1.20703 0.88316 0.90158 0.95516 0.95459 1.22010 0.98458 0.95882 1.00581 1.21398 0.96328 0.95516 0.99981 1.21259 0.95642 0.94803 0.98017 1.21691 0.99448 1.01853 0.95063 1.21754 1.00974 0.96165 1.00183 1.20799 0.99364 0.81573 0.92007 1.44054 0.98952 1.03935 1.83803 1.19004 0.89881 1.05966 1.22757 0.91728 1.24789 0.98829 0.97474 0.95298 1.70024 1.24058 1.36964 1.23711 0.85926 0.82955 0.78221 0.77345 1.21814 1.24383 1.21297 1.20516 0.87821 0.85125 0.77113 1.90880 1.76972 1.19397 1.45783 0.92989 0.90497 0.91364 0.90585 0.91348 0.88280 0.89133 0.74131 0.91654 0.92831 0.91694 0.93322 0.93804 0.93039 0.95198 0.93685 0.91596 0.93406 0.93073 0.94085 0.89417 0.96772 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.31 10.97 59.85 0.66 1.97 16 2 N -0.63 -9.22 3.33 -180.29 -0.60 -9.82 16 3 C 0.11 1.09 7.35 -3.12 -0.02 1.07 16 4 C -0.11 -1.35 6.48 -25.10 -0.16 -1.51 16 5 C -0.15 -2.22 3.31 -91.78 -0.30 -2.52 16 6 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 7 C 0.52 9.87 7.14 -10.99 -0.08 9.80 16 8 O -0.56 -11.72 15.49 5.55 0.09 -11.64 16 9 N -0.68 -13.44 3.62 -60.29 -0.22 -13.66 16 10 C 0.13 2.62 4.42 -4.04 -0.02 2.60 16 11 C 0.16 3.17 3.00 -67.59 -0.20 2.97 16 12 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 13 C -0.13 -2.22 5.03 -26.61 -0.13 -2.36 16 14 C -0.09 -1.59 4.71 -26.69 -0.13 -1.72 16 15 C -0.10 -1.78 0.77 -154.39 -0.12 -1.90 16 16 C -0.12 -2.30 7.99 37.16 0.30 -2.01 16 17 C -0.13 -2.20 8.48 37.16 0.32 -1.88 16 18 C 0.19 4.32 3.95 -3.71 -0.01 4.31 16 19 N -0.58 -13.56 2.42 -164.77 -0.40 -13.96 16 20 C -0.25 -6.43 6.86 -15.06 -0.10 -6.53 16 21 H 0.07 1.78 5.81 -52.49 -0.30 1.48 16 22 C 0.04 0.97 4.35 -17.43 -0.08 0.90 16 23 N -0.90 -25.82 11.13 55.49 0.62 -25.21 16 24 Si 0.92 24.24 26.13 -169.99 -4.44 19.80 16 25 H -0.29 -7.88 7.11 56.52 0.40 -7.47 16 26 H -0.31 -8.42 7.11 56.52 0.40 -8.02 16 27 H -0.29 -7.54 6.92 56.52 0.39 -7.15 16 28 C 0.51 9.23 7.45 -10.86 -0.08 9.15 16 29 O -0.46 -10.49 11.69 5.55 0.06 -10.42 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.35 7.00 -51.93 -0.36 0.99 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.42 9.00 7.02 -40.82 -0.29 8.71 16 38 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.16 6.34 -51.93 -0.33 0.83 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 2.31 6.10 -51.93 -0.32 2.00 16 51 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -32.07 387.41 -8.26 -40.33 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -9.04 Total: 6.42 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -0.17 Total: 12.32 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.60 Total: -62.65 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.15 Total: -22.06 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.44 Total: 19.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.07 -8.26 -40.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089680717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.355 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds