Wall clock time and date at job start Tue Mar 31 2020 19:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34421 * 124.34545 * 2 1 4 4 O 1.21274 * 124.94182 * 0.45239 * 3 2 1 5 5 C 1.51286 * 110.11393 * 180.43055 * 3 2 1 6 6 C 1.54759 * 104.23423 * 16.19114 * 5 3 2 7 7 C 1.46764 * 124.35056 * 180.02562 * 2 1 3 8 8 H 1.08995 * 110.24541 * 282.04725 * 7 2 1 9 9 C 1.50694 * 110.24603 * 43.96150 * 7 2 1 10 10 O 1.21284 * 120.00178 * 27.19253 * 9 7 2 11 11 N 1.34775 * 120.00035 * 207.19216 * 9 7 2 12 12 C 1.46506 * 120.00122 * 184.52351 * 11 9 7 13 13 C 1.53002 * 109.47074 * 185.16290 * 12 11 9 14 14 H 1.08994 * 109.58323 * 60.16036 * 13 12 11 15 15 C 1.53193 * 109.58471 * 180.44538 * 13 12 11 16 16 C 1.53045 * 109.31015 * 174.42222 * 15 13 12 17 17 C 1.53036 * 109.53889 * 298.63470 * 16 15 13 18 18 C 1.52994 * 109.49761 * 181.31953 * 17 16 15 19 19 C 1.53006 * 109.49600 * 301.41561 * 17 16 15 20 20 C 1.53197 * 109.31150 * 61.36524 * 17 16 15 21 21 N 1.46919 * 109.58490 * 299.87959 * 13 12 11 22 22 C 1.36936 * 120.63398 * 6.60423 * 21 13 12 23 23 H 1.07998 * 120.00619 * 330.53736 * 22 21 13 24 24 C 1.38816 * 119.99787 * 150.52650 * 22 21 13 25 25 N 1.31621 * 120.00240 * 342.30011 * 24 22 21 26 26 Si 1.86803 * 119.99916 * 162.29720 * 24 22 21 27 27 H 1.48499 * 109.47098 * 63.68688 * 26 24 22 28 28 H 1.48498 * 109.47307 * 183.69139 * 26 24 22 29 29 H 1.48502 * 109.47122 * 303.69075 * 26 24 22 30 30 H 1.09001 * 109.47035 * 269.97250 * 1 2 3 31 31 H 1.08994 * 109.47069 * 29.97503 * 1 2 3 32 32 H 1.09004 * 109.46832 * 149.97765 * 1 2 3 33 33 H 1.08993 * 110.48776 * 134.92977 * 5 3 2 34 34 H 1.09005 * 110.48257 * 257.44259 * 5 3 2 35 35 H 1.09005 * 111.04686 * 217.18841 * 6 5 3 36 36 H 1.09003 * 110.95441 * 93.37913 * 6 5 3 37 37 H 0.97003 * 120.00228 * 4.51612 * 11 9 7 38 38 H 1.09002 * 109.47213 * 65.16350 * 12 11 9 39 39 H 1.09002 * 109.46899 * 305.16056 * 12 11 9 40 40 H 1.08997 * 109.49930 * 294.37237 * 15 13 12 41 41 H 1.08996 * 109.49808 * 54.47141 * 15 13 12 42 42 H 1.09000 * 109.45938 * 58.65837 * 16 15 13 43 43 H 1.09000 * 109.45826 * 178.62772 * 16 15 13 44 44 H 1.08993 * 109.47776 * 60.00176 * 18 17 16 45 45 H 1.09002 * 109.47375 * 180.02562 * 18 17 16 46 46 H 1.09005 * 109.47309 * 299.99435 * 18 17 16 47 47 H 1.08998 * 109.46967 * 60.00216 * 19 17 16 48 48 H 1.09001 * 109.46464 * 180.02562 * 19 17 16 49 49 H 1.08995 * 109.47152 * 299.99581 * 19 17 16 50 50 H 1.08993 * 109.58515 * 65.15330 * 20 17 16 51 51 H 1.09002 * 109.58418 * 185.58075 * 20 17 16 52 52 H 0.97006 * 119.99700 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7945 2.2442 0.0078 5 6 3.6898 0.7380 -0.0107 6 6 3.7019 -0.7502 -0.4354 7 6 2.2932 -1.2117 -0.0005 8 1 2.3298 -1.6440 0.9994 9 6 1.7472 -2.2160 -0.9824 10 8 1.1159 -1.8396 -1.9472 11 7 1.9605 -3.5326 -0.7886 12 6 1.5163 -4.5023 -1.7930 13 6 1.7611 -5.9211 -1.2752 14 1 1.2005 -6.0754 -0.3533 15 6 1.3078 -6.9373 -2.3282 16 6 1.6818 -8.3472 -1.8649 17 6 3.2014 -8.4508 -1.7164 18 6 3.5768 -9.8699 -1.2850 19 6 3.8684 -8.1301 -3.0556 20 6 3.6762 -7.4517 -0.6565 21 7 3.1950 -6.1108 -1.0173 22 6 4.0665 -5.0591 -1.1149 23 1 3.8608 -4.2487 -1.7985 24 6 5.2146 -5.0345 -0.3349 25 7 5.3061 -5.8079 0.7261 26 14 6.6297 -3.9036 -0.7912 27 1 6.1842 -2.4902 -0.6963 28 1 7.7637 -4.1289 0.1407 29 1 7.0661 -4.1927 -2.1809 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 4.2324 1.3462 -0.7343 34 1 4.1203 0.8552 0.9839 35 1 4.4753 -1.3032 0.0978 36 1 3.8284 -0.8468 -1.5137 37 1 2.4082 -3.8382 0.0159 38 1 2.0755 -4.3510 -2.7163 39 1 0.4524 -4.3643 -1.9856 40 1 0.2274 -6.8711 -2.4563 41 1 1.8008 -6.7231 -3.2764 42 1 1.2083 -8.5514 -0.9046 43 1 1.3387 -9.0742 -2.6010 44 1 3.2363 -10.5806 -2.0380 45 1 4.6591 -9.9431 -1.1789 46 1 3.1024 -10.0969 -0.3302 47 1 3.6016 -7.1185 -3.3613 48 1 4.9507 -8.2045 -2.9493 49 1 3.5282 -8.8394 -3.8100 50 1 3.2735 -7.7325 0.3166 51 1 4.7655 -7.4508 -0.6172 52 1 6.1086 -5.7909 1.2709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089683339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:01 Heat of formation + Delta-G solvation = -51.339552 kcal Electronic energy + Delta-G solvation = -31879.019611 eV Core-core repulsion = 27878.861243 eV Total energy + Delta-G solvation = -4000.158368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.71665 -39.15648 -38.36839 -36.09854 -35.13192 -33.31774 -32.77034 -32.18726 -30.10405 -28.80044 -26.94571 -26.67229 -26.54442 -25.58523 -23.67950 -22.41575 -22.13391 -20.23341 -20.16921 -19.21642 -17.99853 -17.45788 -16.78904 -16.35399 -15.78374 -15.65442 -15.38938 -14.64402 -14.53743 -14.22985 -13.91619 -13.84913 -13.79101 -13.40652 -13.37029 -13.29747 -13.07706 -12.62978 -12.52255 -12.39877 -12.24897 -12.05339 -11.82172 -11.60921 -11.43542 -11.35643 -11.21571 -11.09905 -10.88761 -10.86005 -10.71449 -10.49972 -10.19877 -10.17136 -9.88323 -9.81165 -9.64449 -9.49853 -9.34358 -8.70310 -8.57292 -8.35482 -6.77777 -5.95662 -3.39275 2.61152 2.80042 3.08631 3.19405 3.32100 3.35101 3.70358 4.31317 4.38078 4.53763 4.89948 5.01739 5.09662 5.19819 5.21751 5.35723 5.38028 5.40530 5.41425 5.53723 5.61508 5.68229 5.70986 5.79814 5.86819 5.94217 5.97247 6.01684 6.02391 6.10163 6.16518 6.25034 6.29148 6.38072 6.40558 6.41671 6.44994 6.46326 6.58516 6.83162 6.85574 6.92618 7.03700 7.04822 7.12280 7.29192 7.54698 7.67274 8.07241 8.21854 8.27950 8.66304 9.04032 9.67296 10.25807 11.10782 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.004002 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.179416 B = 6995.694568 C = 8384.811974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.599 5.599 3 C 0.521 3.479 4 O -0.539 6.539 5 C -0.153 4.153 6 C -0.119 4.119 7 C 0.115 3.885 8 H 0.101 0.899 9 C 0.501 3.499 10 O -0.552 6.552 11 N -0.687 5.687 12 C 0.135 3.865 13 C 0.161 3.839 14 H 0.032 0.968 15 C -0.130 4.130 16 C -0.096 4.096 17 C -0.095 4.095 18 C -0.134 4.134 19 C -0.125 4.125 20 C 0.188 3.812 21 N -0.585 5.585 22 C -0.256 4.256 23 H 0.070 0.930 24 C 0.011 3.989 25 N -0.894 5.894 26 Si 0.887 3.113 27 H -0.277 1.277 28 H -0.292 1.292 29 H -0.284 1.284 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.419 0.581 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.042 0.958 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.031 0.969 50 H 0.018 0.982 51 H 0.083 0.917 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -0.326 -0.399 4.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.332 5.332 3 C 0.309 3.691 4 O -0.417 6.417 5 C -0.193 4.193 6 C -0.157 4.157 7 C 0.008 3.992 8 H 0.119 0.881 9 C 0.284 3.716 10 O -0.432 6.432 11 N -0.339 5.339 12 C 0.011 3.989 13 C 0.054 3.946 14 H 0.049 0.951 15 C -0.170 4.170 16 C -0.133 4.133 17 C -0.096 4.096 18 C -0.192 4.192 19 C -0.182 4.182 20 C 0.062 3.938 21 N -0.309 5.309 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.189 4.189 25 N -0.537 5.537 26 Si 0.717 3.283 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.211 1.211 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.258 0.742 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.050 0.950 50 H 0.036 0.964 51 H 0.101 0.899 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.217 0.513 -0.934 5.324 hybrid contribution 1.112 0.083 0.143 1.124 sum -4.104 0.596 -0.791 4.222 Atomic orbital electron populations 1.21586 0.77762 1.03991 1.01151 1.47854 1.06612 1.06064 1.72687 1.20855 0.89350 0.84078 0.74829 1.90692 1.78885 1.20932 1.51158 1.22381 0.94564 0.97501 1.04879 1.22666 0.94452 0.94848 1.03742 1.21646 0.91748 0.85962 0.99887 0.88083 1.20423 0.80654 0.83713 0.86768 1.90667 1.41229 1.79991 1.31283 1.46141 1.58142 1.04725 1.24872 1.21311 0.97914 0.87872 0.91841 1.20716 0.87775 0.90928 0.95175 0.95079 1.22005 0.99059 0.95901 1.00025 1.21410 0.96045 0.95955 0.99939 1.21232 0.94582 0.95712 0.98102 1.21760 1.01008 0.96267 1.00144 1.21705 0.99625 1.01280 0.95570 1.20787 0.99986 0.81629 0.91369 1.44034 1.00059 1.05324 1.81433 1.19134 1.01438 1.01049 1.16931 0.91217 1.25009 0.99847 0.98791 0.95241 1.70027 1.27770 1.41546 1.14354 0.86653 0.82796 0.80858 0.78024 1.20288 1.21769 1.21088 0.92940 0.90844 0.90172 0.87812 0.87508 0.87554 0.89385 0.74172 0.91731 0.92429 0.93121 0.91620 0.92917 0.93620 0.93928 0.93048 0.93316 0.91583 0.93658 0.95024 0.96429 0.89869 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.32 10.48 59.85 0.63 1.94 16 2 N -0.60 -8.92 2.99 -174.02 -0.52 -9.44 16 3 C 0.52 8.16 8.02 -10.86 -0.09 8.08 16 4 O -0.54 -10.12 17.59 5.56 0.10 -10.02 16 5 C -0.15 -1.89 6.86 -26.67 -0.18 -2.08 16 6 C -0.12 -1.61 6.69 -25.03 -0.17 -1.77 16 7 C 0.12 1.64 3.70 -68.16 -0.25 1.38 16 8 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 9 C 0.50 8.29 6.26 -10.99 -0.07 8.22 16 10 O -0.55 -10.67 15.17 5.55 0.08 -10.59 16 11 N -0.69 -11.43 3.95 -60.29 -0.24 -11.67 16 12 C 0.13 2.27 4.45 -4.04 -0.02 2.25 16 13 C 0.16 2.78 3.03 -67.60 -0.20 2.57 16 14 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 15 C -0.13 -1.99 5.03 -26.61 -0.13 -2.12 16 16 C -0.10 -1.45 4.71 -26.69 -0.13 -1.57 16 17 C -0.09 -1.57 0.77 -154.39 -0.12 -1.69 16 18 C -0.13 -1.98 8.48 37.15 0.32 -1.67 16 19 C -0.12 -2.08 7.99 37.16 0.30 -1.79 16 20 C 0.19 3.82 3.97 -3.69 -0.01 3.80 16 21 N -0.59 -11.78 2.42 -164.75 -0.40 -12.18 16 22 C -0.26 -5.60 6.90 -15.06 -0.10 -5.70 16 23 H 0.07 1.56 5.79 -52.49 -0.30 1.25 16 24 C 0.01 0.26 4.88 -17.43 -0.09 0.17 16 25 N -0.89 -22.05 11.37 55.49 0.63 -21.42 16 26 Si 0.89 18.72 29.59 -169.99 -5.03 13.69 16 27 H -0.28 -5.40 6.45 56.52 0.36 -5.03 16 28 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 32 H 0.08 1.13 6.29 -51.93 -0.33 0.80 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.11 1.41 7.49 -51.93 -0.39 1.02 16 36 H 0.09 1.29 7.91 -51.93 -0.41 0.88 16 37 H 0.42 7.30 7.13 -40.82 -0.29 7.01 16 38 H 0.06 1.19 7.44 -51.93 -0.39 0.81 16 39 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.04 6.34 -51.93 -0.33 0.72 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.20 5.98 -51.93 -0.31 0.89 16 48 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.08 1.95 6.21 -51.93 -0.32 1.63 16 52 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -27.23 394.86 -8.74 -35.97 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -8.99 Total: 9.68 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -0.32 Total: 10.03 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.53 Total: -54.71 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.18 Total: -20.61 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -27.23 -8.74 -35.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089683339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.365 kcal (2) G-P(sol) polarization free energy of solvation -27.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds