Wall clock time and date at job start Tue Mar 31 2020 20:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 110.43065 * 2 1 4 4 O 1.21291 * 119.99754 * 122.76303 * 3 2 1 5 5 N 1.34775 * 120.00168 * 302.75132 * 3 2 1 6 6 C 1.46504 * 119.99958 * 184.52224 * 5 3 2 7 7 C 1.52996 * 109.46927 * 175.80442 * 6 5 3 8 8 H 1.09003 * 109.58907 * 300.65318 * 7 6 5 9 9 C 1.53194 * 109.58677 * 180.22531 * 7 6 5 10 10 C 1.53037 * 109.31068 * 185.57740 * 9 7 6 11 11 C 1.53038 * 109.54200 * 61.36472 * 10 9 7 12 12 C 1.52997 * 109.49953 * 178.68285 * 11 10 9 13 13 C 1.52996 * 109.52479 * 58.60105 * 11 10 9 14 14 C 1.53197 * 109.31068 * 298.63375 * 11 10 9 15 15 N 1.46919 * 108.77621 * 54.63543 * 14 11 10 16 16 C 1.36935 * 120.63247 * 126.36944 * 15 14 11 17 17 H 1.08002 * 119.99962 * 212.38497 * 16 15 14 18 18 C 1.38809 * 120.00224 * 32.38260 * 16 15 14 19 19 N 1.31627 * 119.99651 * 10.34023 * 18 16 15 20 20 Si 1.86797 * 120.00378 * 190.34289 * 18 16 15 21 21 H 1.48497 * 109.47651 * 95.07069 * 20 18 16 22 22 H 1.48507 * 109.46996 * 215.07214 * 20 18 16 23 23 H 1.48500 * 109.47013 * 335.06692 * 20 18 16 24 24 C 1.54630 * 110.59540 * 122.61549 * 2 1 3 25 25 C 1.54489 * 101.76250 * 143.53676 * 24 2 1 26 26 N 1.46764 * 105.47043 * 334.58148 * 25 24 2 27 27 C 1.34420 * 111.30271 * 17.01863 * 26 25 24 28 28 O 1.21285 * 124.94440 * 179.55908 * 27 26 25 29 29 H 1.08995 * 109.47029 * 64.21496 * 1 2 3 30 30 H 1.09001 * 109.47218 * 184.21552 * 1 2 3 31 31 H 1.09001 * 109.47292 * 304.21078 * 1 2 3 32 32 H 0.96996 * 119.99532 * 4.80315 * 5 3 2 33 33 H 1.09001 * 109.46757 * 295.79959 * 6 5 3 34 34 H 1.08997 * 109.46953 * 55.80563 * 6 5 3 35 35 H 1.08996 * 109.49434 * 305.52277 * 9 7 6 36 36 H 1.08997 * 109.49765 * 65.62530 * 9 7 6 37 37 H 1.09007 * 109.46228 * 301.34225 * 10 9 7 38 38 H 1.09004 * 109.45768 * 181.38441 * 10 9 7 39 39 H 1.09001 * 109.47096 * 179.83816 * 12 11 10 40 40 H 1.09007 * 109.47203 * 299.83651 * 12 11 10 41 41 H 1.08994 * 109.47614 * 59.83685 * 12 11 10 42 42 H 1.09003 * 109.47117 * 300.14713 * 13 11 10 43 43 H 1.09000 * 109.47065 * 60.14623 * 13 11 10 44 44 H 1.08995 * 109.47514 * 180.14882 * 13 11 10 45 45 H 1.09003 * 109.58562 * 294.84349 * 14 11 10 46 46 H 1.09001 * 109.69995 * 174.49434 * 14 11 10 47 47 H 0.97001 * 119.99772 * 180.02562 * 19 18 16 48 48 H 1.09005 * 110.96828 * 261.64684 * 24 2 1 49 49 H 1.08996 * 110.97332 * 25.41907 * 24 2 1 50 50 H 1.08996 * 110.24186 * 215.58617 * 25 24 2 51 51 H 1.08995 * 110.24784 * 93.58153 * 25 24 2 52 52 H 0.97000 * 124.34627 * 197.04451 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.8004 1.7820 0.8833 5 7 1.6996 2.2641 -0.9816 6 6 2.2877 3.6048 -1.0374 7 6 1.7979 4.3246 -2.2955 8 1 2.0871 3.7547 -3.1785 9 6 2.4157 5.7249 -2.3593 10 6 1.8161 6.4892 -3.5419 11 6 0.3058 6.6362 -3.3434 12 6 -0.2878 7.4288 -4.5098 13 6 0.0319 7.3752 -2.0321 14 6 -0.3360 5.2461 -3.2907 15 7 0.3350 4.4546 -2.2506 16 6 -0.3890 3.8500 -1.2580 17 1 0.0374 3.7343 -0.2725 18 6 -1.6711 3.3859 -1.5184 19 7 -2.1153 3.3395 -2.7566 20 14 -2.7659 2.8272 -0.1118 21 1 -3.6419 3.9497 0.3097 22 1 -3.6043 1.6864 -0.5601 23 1 -1.9218 2.4011 1.0333 24 6 2.0740 -0.7802 1.2192 25 6 3.3234 -1.4656 0.6226 26 7 3.0583 -1.5786 -0.8164 27 6 2.0595 -0.7623 -1.1946 28 8 1.6437 -0.6524 -2.3286 29 1 -0.3633 0.4470 -0.9253 30 1 -0.3634 -1.0249 0.0755 31 1 -0.3634 0.5778 0.8499 32 1 1.0507 1.9910 -1.6488 33 1 1.9874 4.1702 -0.1552 34 1 3.3743 3.5240 -1.0647 35 1 2.2012 6.2597 -1.4341 36 1 3.4946 5.6410 -2.4899 37 1 2.0095 5.9412 -4.4641 38 1 2.2720 7.4773 -3.6044 39 1 -1.3639 7.5307 -4.3694 40 1 0.1691 8.4178 -4.5469 41 1 -0.0915 6.9026 -5.4439 42 1 0.4559 6.8107 -1.2015 43 1 0.4886 8.3641 -2.0700 44 1 -1.0440 7.4771 -1.8903 45 1 -0.2206 4.7536 -4.2563 46 1 -1.3955 5.3394 -3.0524 47 1 -3.0113 3.0156 -2.9385 48 1 2.3496 -0.1007 2.0258 49 1 1.3507 -1.5193 1.5637 50 1 3.4560 -2.4548 1.0605 51 1 4.2084 -0.8536 0.7963 52 1 3.5416 -2.1670 -1.4174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099229765.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:28 Heat of formation + Delta-G solvation = -59.516280 kcal Electronic energy + Delta-G solvation = -32512.054608 eV Core-core repulsion = 28511.541671 eV Total energy + Delta-G solvation = -4000.512938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95627 -38.93857 -38.13329 -36.25312 -35.00521 -33.25533 -33.04665 -31.92498 -29.95764 -28.77413 -27.34199 -26.57621 -25.48688 -25.29792 -23.72209 -22.28269 -21.91185 -21.18482 -20.08144 -18.87504 -17.87152 -17.42634 -17.14390 -16.25259 -15.56938 -15.40050 -15.09636 -14.72672 -14.26756 -14.12216 -13.84134 -13.77062 -13.62822 -13.48350 -13.25021 -13.21045 -12.93208 -12.61683 -12.38613 -12.14220 -12.08519 -11.98343 -11.63956 -11.36473 -11.31290 -11.25560 -11.11306 -11.01911 -10.79681 -10.73779 -10.58014 -10.36848 -10.08081 -10.03231 -9.76771 -9.75082 -9.43609 -9.32765 -9.20842 -9.08626 -8.54393 -8.22961 -6.58491 -5.80378 -3.29027 2.54772 3.03427 3.31128 3.37866 3.40208 3.41465 3.83622 4.35333 4.43178 4.46360 4.81415 5.07811 5.20762 5.26779 5.32907 5.39725 5.48219 5.49159 5.53207 5.64585 5.79535 5.85005 5.87794 5.92376 5.97490 6.06790 6.10528 6.13335 6.20155 6.26501 6.36033 6.40231 6.47804 6.49301 6.51157 6.51829 6.55818 6.68961 6.76358 6.94771 6.96807 6.98017 7.05823 7.16011 7.18925 7.43433 7.73227 7.81034 8.22639 8.29373 8.45242 8.79213 9.19864 9.80528 10.40068 11.25985 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.004631 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.162415 B = 6044.325955 C = 7071.376212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C 0.527 3.473 4 O -0.558 6.558 5 N -0.681 5.681 6 C 0.134 3.866 7 C 0.159 3.841 8 H 0.032 0.968 9 C -0.129 4.129 10 C -0.095 4.095 11 C -0.095 4.095 12 C -0.133 4.133 13 C -0.123 4.123 14 C 0.188 3.812 15 N -0.584 5.584 16 C -0.251 4.251 17 H 0.069 0.931 18 C 0.012 3.988 19 N -0.895 5.895 20 Si 0.886 3.114 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.275 1.275 24 C -0.118 4.118 25 C 0.103 3.897 26 N -0.733 5.733 27 C 0.532 3.468 28 O -0.510 6.510 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.423 0.577 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.029 0.971 44 H 0.044 0.956 45 H 0.016 0.984 46 H 0.088 0.912 47 H 0.254 0.746 48 H 0.108 0.892 49 H 0.086 0.914 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -4.195 3.794 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 C 0.311 3.689 4 O -0.438 6.438 5 N -0.332 5.332 6 C 0.010 3.990 7 C 0.052 3.948 8 H 0.049 0.951 9 C -0.169 4.169 10 C -0.133 4.133 11 C -0.097 4.097 12 C -0.191 4.191 13 C -0.180 4.180 14 C 0.062 3.938 15 N -0.308 5.308 16 C -0.381 4.381 17 H 0.086 0.914 18 C -0.188 4.188 19 N -0.539 5.539 20 Si 0.716 3.284 21 H -0.217 1.217 22 H -0.215 1.215 23 H -0.200 1.200 24 C -0.155 4.155 25 C -0.022 4.022 26 N -0.389 5.389 27 C 0.316 3.684 28 O -0.383 6.383 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.126 0.874 49 H 0.105 0.895 50 H 0.097 0.903 51 H 0.093 0.907 52 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.617 -3.861 3.779 10.171 hybrid contribution -0.789 -0.673 0.131 1.045 sum 7.828 -4.534 3.910 9.856 Atomic orbital electron populations 1.21772 0.89539 1.02832 1.05060 1.21565 0.99704 0.94702 0.96233 1.19542 0.81116 0.85809 0.82442 1.90617 1.38268 1.77961 1.36963 1.46083 1.43924 1.13630 1.29565 1.21320 0.95580 0.82673 0.99378 1.20736 0.86877 0.92775 0.94368 0.95089 1.21997 0.97999 0.97696 0.99180 1.21405 0.95721 0.98452 0.97718 1.21248 0.94889 0.99179 0.94363 1.21756 1.00478 0.98677 0.98197 1.21691 1.00596 0.97682 0.98080 1.20820 0.97538 0.84972 0.90466 1.43997 0.99014 1.57094 1.30653 1.19151 0.96995 1.31658 0.90262 0.91378 1.25106 0.99259 0.98938 0.95455 1.69973 1.17638 1.49283 1.16984 0.86547 0.81174 0.78313 0.82353 1.21653 1.21530 1.19993 1.22683 0.96394 0.99232 0.97236 1.22084 0.98952 1.01175 0.79955 1.46149 1.37456 1.44382 1.10957 1.20404 0.79476 0.79496 0.89055 1.90807 1.60715 1.65628 1.21189 0.89681 0.91710 0.90847 0.73739 0.91509 0.92733 0.91626 0.93236 0.92965 0.93713 0.93056 0.94037 0.93358 0.91622 0.95141 0.93664 0.96549 0.89428 0.93589 0.87388 0.89530 0.90264 0.90660 0.75202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.29 37.16 0.31 -1.91 16 2 C -0.12 -1.84 0.76 -155.67 -0.12 -1.95 16 3 C 0.53 9.93 6.55 -10.99 -0.07 9.85 16 4 O -0.56 -11.20 15.48 5.55 0.09 -11.12 16 5 N -0.68 -13.62 3.92 -60.29 -0.24 -13.85 16 6 C 0.13 2.58 4.43 -4.04 -0.02 2.56 16 7 C 0.16 3.13 3.02 -67.60 -0.20 2.92 16 8 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 9 C -0.13 -2.18 5.03 -26.61 -0.13 -2.31 16 10 C -0.10 -1.58 4.71 -26.69 -0.13 -1.71 16 11 C -0.10 -1.72 0.77 -154.39 -0.12 -1.84 16 12 C -0.13 -2.14 8.48 37.16 0.32 -1.83 16 13 C -0.12 -2.20 7.99 37.16 0.30 -1.91 16 14 C 0.19 4.18 3.93 -3.71 -0.01 4.16 16 15 N -0.58 -13.11 2.41 -164.77 -0.40 -13.50 16 16 C -0.25 -6.11 6.87 -15.06 -0.10 -6.21 16 17 H 0.07 1.70 5.91 -52.49 -0.31 1.39 16 18 C 0.01 0.31 5.05 -17.43 -0.09 0.22 16 19 N -0.90 -24.20 11.11 55.49 0.62 -23.58 16 20 Si 0.89 20.57 29.57 -169.99 -5.03 15.54 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.12 -1.40 6.02 -25.09 -0.15 -1.55 16 25 C 0.10 1.03 7.78 -3.12 -0.02 1.00 16 26 N -0.73 -8.84 6.24 -59.20 -0.37 -9.21 16 27 C 0.53 8.69 7.15 -10.86 -0.08 8.61 16 28 O -0.51 -10.26 17.84 5.55 0.10 -10.16 16 29 H 0.08 1.66 7.49 -51.93 -0.39 1.27 16 30 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.42 9.32 6.53 -40.82 -0.27 9.06 16 33 H 0.07 1.36 7.37 -51.93 -0.38 0.98 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.13 6.33 -51.93 -0.33 0.80 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.27 5.97 -51.93 -0.31 0.96 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.22 6.17 -51.93 -0.32 1.90 16 47 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 48 H 0.11 1.37 6.96 -51.93 -0.36 1.00 16 49 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 50 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.41 4.03 8.96 -40.82 -0.37 3.66 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -29.15 394.66 -8.53 -37.68 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -8.92 Total: 14.14 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.33 Total: 8.12 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.39 Total: -60.15 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.18 Total: -21.28 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.15 -8.53 -37.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099229765.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.837 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds