Wall clock time and date at job start Tue Mar 31 2020 20:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 115.54839 * 2 1 4 4 C 1.52994 * 117.50112 * 214.28548 * 2 1 3 5 5 C 1.52993 * 60.00426 * 252.51128 * 4 2 1 6 6 H 1.08993 * 117.50153 * 252.50801 * 5 4 2 7 7 C 1.50705 * 117.51734 * 107.47714 * 5 4 2 8 8 O 1.21283 * 119.99898 * 291.28928 * 7 5 4 9 9 N 1.34777 * 119.99975 * 111.28724 * 7 5 4 10 10 C 1.46924 * 120.62844 * 354.89898 * 9 7 5 11 11 C 1.53202 * 108.77522 * 233.58793 * 10 9 7 12 12 C 1.53044 * 109.30915 * 305.36902 * 11 10 9 13 13 C 1.53038 * 109.53907 * 61.36366 * 12 11 10 14 14 C 1.46927 * 120.63079 * 174.62192 * 9 7 5 15 15 H 1.08993 * 109.58426 * 246.19912 * 14 9 7 16 16 C 1.52997 * 109.58402 * 6.62387 * 14 9 7 17 17 N 1.46903 * 109.46815 * 181.24095 * 16 14 9 18 18 C 1.46902 * 111.00230 * 185.63495 * 17 16 14 19 19 C 1.50690 * 109.47384 * 179.97438 * 18 17 16 20 20 O 1.21294 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34782 * 120.00102 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00042 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00302 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00002 * 180.02562 * 22 21 19 25 25 N 1.31405 * 119.99925 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99924 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46945 * 89.99868 * 26 24 22 28 28 H 1.48498 * 109.46828 * 209.99738 * 26 24 22 29 29 H 1.48497 * 109.47028 * 330.00032 * 26 24 22 30 30 H 1.09003 * 109.47163 * 274.33405 * 1 2 3 31 31 H 1.09006 * 109.46841 * 34.33203 * 1 2 3 32 32 H 1.08994 * 109.46960 * 154.32956 * 1 2 3 33 33 H 1.09005 * 109.46878 * 205.66830 * 3 2 1 34 34 H 1.08996 * 109.47585 * 325.66530 * 3 2 1 35 35 H 1.08998 * 109.47412 * 85.67168 * 3 2 1 36 36 H 1.08997 * 117.49799 * 145.01837 * 4 2 1 37 37 H 1.09004 * 117.49859 * 0.02562 * 4 2 1 38 38 H 1.09001 * 109.58983 * 353.36885 * 10 9 7 39 39 H 1.08995 * 109.58637 * 113.66154 * 10 9 7 40 40 H 1.09003 * 109.49779 * 65.31272 * 11 10 9 41 41 H 1.08993 * 109.49818 * 185.38025 * 11 10 9 42 42 H 1.08999 * 109.45746 * 181.38956 * 12 11 10 43 43 H 1.09002 * 109.45522 * 301.35406 * 12 11 10 44 44 H 1.08997 * 109.50010 * 58.58970 * 13 12 11 45 45 H 1.09004 * 109.49422 * 178.68372 * 13 12 11 46 46 H 1.09001 * 109.47663 * 301.24031 * 16 14 9 47 47 H 1.09001 * 109.47148 * 61.24582 * 16 14 9 48 48 H 1.00898 * 111.00050 * 61.68556 * 17 16 14 49 49 H 1.09003 * 109.46922 * 300.00534 * 18 17 16 50 50 H 1.09002 * 109.47114 * 59.99802 * 18 17 16 51 51 H 0.97001 * 119.99948 * 0.02562 * 21 19 18 52 52 H 0.97010 * 120.00033 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1715 -0.8747 1.2687 7 6 1.3720 -2.1397 1.4621 8 8 0.1638 -2.0513 1.4041 9 7 1.9415 -3.1494 2.1497 10 6 3.3989 -3.3350 2.1373 11 6 3.7092 -4.7737 1.7122 12 6 2.9596 -5.7447 2.6273 13 6 1.4526 -5.5154 2.4920 14 6 1.1172 -4.0819 2.9306 15 1 1.3347 -3.9611 3.9918 16 6 -0.3637 -3.7974 2.6719 17 7 -1.1856 -4.7113 3.4765 18 6 -2.6109 -4.5589 3.1550 19 6 -3.4205 -5.5105 3.9975 20 8 -2.8649 -6.2434 4.7884 21 7 -4.7620 -5.5466 3.8729 22 6 -5.4986 -6.4128 4.6390 23 1 -5.0038 -7.0659 5.3426 24 6 -6.8816 -6.4504 4.5103 25 7 -7.5875 -7.2802 5.2449 26 14 -7.7373 -5.3212 3.2928 27 1 -7.8449 -6.0021 1.9775 28 1 -9.0964 -4.9930 3.7930 29 1 -6.9507 -4.0709 3.1400 30 1 -0.3633 0.0777 1.0247 31 1 -0.3633 0.8487 -0.5796 32 1 -0.3633 -0.9262 -0.4452 33 1 3.1823 1.3087 -0.4452 34 1 1.5810 2.0743 -0.5796 35 1 2.2766 1.7417 1.0247 36 1 3.1715 -0.8756 -1.2678 37 1 1.6112 -1.8588 -1.2678 38 1 3.8499 -2.6395 1.4294 39 1 3.7990 -3.1521 3.1346 40 1 3.3897 -4.9254 0.6812 41 1 4.7814 -4.9531 1.7909 42 1 3.1981 -6.7695 2.3426 43 1 3.2612 -5.5755 3.6610 44 1 1.1543 -5.6601 1.4537 45 1 0.9186 -6.2230 3.1264 46 1 -0.5896 -2.7674 2.9479 47 1 -0.5831 -3.9469 1.6147 48 1 -1.0206 -4.5732 4.4623 49 1 -2.9224 -3.5349 3.3616 50 1 -2.7713 -4.7816 2.1001 51 1 -5.2064 -4.9603 3.2407 52 1 -8.5531 -7.3067 5.1547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484614708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:24 Heat of formation + Delta-G solvation = -31.181430 kcal Electronic energy + Delta-G solvation = -30177.880026 eV Core-core repulsion = 26178.595779 eV Total energy + Delta-G solvation = -3999.284246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03789 -38.76602 -38.26934 -36.90757 -35.38843 -33.82964 -33.10356 -31.72692 -31.46317 -29.70445 -27.74917 -27.70055 -25.98121 -24.53666 -24.23214 -23.07683 -21.68784 -21.07299 -19.79463 -19.27996 -18.67507 -18.23111 -17.36508 -16.15129 -15.89030 -15.56125 -15.26649 -15.01045 -14.83573 -14.64582 -14.59288 -14.25660 -14.00094 -13.83881 -13.60095 -13.39302 -13.17363 -13.09019 -12.99270 -12.78325 -12.50960 -12.29716 -12.24308 -12.09666 -11.95965 -11.80933 -11.59082 -11.47817 -11.15101 -11.14121 -11.02710 -10.82841 -10.67357 -10.53103 -10.49608 -10.05796 -9.91542 -9.50283 -9.31161 -8.75876 -8.45572 -8.11323 -7.82622 -6.25198 -3.76032 2.28773 2.66393 3.08985 3.12983 3.20078 3.42276 3.83909 4.05903 4.16218 4.27079 4.39152 4.41679 4.51832 4.62806 4.66834 4.74505 4.77826 4.88044 5.01787 5.09121 5.17830 5.19565 5.26845 5.30504 5.31678 5.34488 5.39679 5.51382 5.55065 5.62010 5.68921 5.71863 5.74070 5.79983 5.81086 5.88706 5.92591 5.94647 6.00145 6.04603 6.08228 6.19908 6.31151 6.34621 6.54547 7.15699 7.32105 7.65595 7.74200 8.07161 8.21563 8.67209 9.01706 9.49770 9.91255 10.88079 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002630 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.257033 B =10644.614644 C =12463.808513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.147 4.147 5 C -0.190 4.190 6 H 0.120 0.880 7 C 0.541 3.459 8 O -0.523 6.523 9 N -0.606 5.606 10 C 0.110 3.890 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.121 4.121 14 C 0.151 3.849 15 H 0.071 0.929 16 C 0.070 3.930 17 N -0.676 5.676 18 C 0.056 3.944 19 C 0.452 3.548 20 O -0.566 6.566 21 N -0.593 5.593 22 C -0.303 4.303 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.884 5.884 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.054 0.946 47 H 0.081 0.919 48 H 0.344 0.656 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.371 0.629 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.885 15.693 -12.886 32.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.094 4.094 3 C -0.174 4.174 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.137 0.863 7 C 0.330 3.670 8 O -0.400 6.400 9 N -0.340 5.340 10 C -0.013 4.013 11 C -0.172 4.172 12 C -0.161 4.161 13 C -0.159 4.159 14 C 0.049 3.951 15 H 0.089 0.911 16 C -0.058 4.058 17 N -0.310 5.310 18 C -0.077 4.077 19 C 0.238 3.762 20 O -0.448 6.448 21 N -0.233 5.233 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.524 5.524 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.163 0.837 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.203 0.797 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 25.491 14.623 -12.738 32.029 hybrid contribution -0.798 1.538 -0.418 1.783 sum 24.693 16.161 -13.155 32.311 Atomic orbital electron populations 1.21365 0.90473 1.01498 1.02714 1.21593 0.96116 0.90434 1.01229 1.21399 0.99874 0.93901 1.02179 1.23199 1.02803 1.01712 0.90729 1.22430 1.01924 1.01033 0.95756 0.86256 1.19700 0.88041 0.80909 0.78363 1.90767 1.14122 1.74745 1.60338 1.48151 1.07407 1.29093 1.49314 1.21736 0.80083 0.97629 1.01896 1.21916 1.00425 0.94481 1.00411 1.21572 0.95760 0.99136 0.99588 1.21952 0.95138 0.96147 1.02707 1.21362 0.90857 0.88646 0.94283 0.91142 1.22535 0.90018 0.94230 0.99047 1.60039 1.04675 1.55547 1.10735 1.21582 0.88522 0.97326 1.00303 1.19792 0.82445 0.87126 0.86831 1.90548 1.70348 1.44323 1.39536 1.42221 1.05913 1.37114 1.38013 1.19431 0.89146 1.15992 1.18594 0.86323 1.25030 0.96104 0.97414 0.97684 1.69625 1.06936 1.36407 1.39426 0.86673 0.80128 0.80866 0.81765 1.19622 1.20247 1.19470 0.91318 0.93351 0.91584 0.92387 0.91592 0.92019 0.88020 0.88259 0.89727 0.91463 0.91510 0.90914 0.91606 0.91865 0.91838 0.88952 0.92783 0.90083 0.83696 0.93874 0.89690 0.79684 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 8.09 37.16 0.30 -0.72 16 2 C -0.09 -0.75 2.70 -154.51 -0.42 -1.16 16 3 C -0.12 -0.70 9.85 37.16 0.37 -0.33 16 4 C -0.15 -1.03 9.53 -26.74 -0.25 -1.29 16 5 C -0.19 -1.52 4.54 -91.77 -0.42 -1.93 16 6 H 0.12 0.73 7.07 -51.93 -0.37 0.37 16 7 C 0.54 5.90 7.37 -10.98 -0.08 5.82 16 8 O -0.52 -7.18 8.51 5.56 0.05 -7.13 16 9 N -0.61 -5.96 2.97 -164.97 -0.49 -6.45 16 10 C 0.11 0.74 6.25 -3.71 -0.02 0.72 16 11 C -0.13 -0.90 6.08 -26.60 -0.16 -1.06 16 12 C -0.12 -1.04 5.88 -26.69 -0.16 -1.20 16 13 C -0.12 -1.37 5.18 -26.39 -0.14 -1.50 16 14 C 0.15 1.76 3.18 -67.38 -0.21 1.55 16 15 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 16 C 0.07 1.01 3.52 -3.82 -0.01 0.99 16 17 N -0.68 -11.35 5.55 -115.06 -0.64 -11.98 16 18 C 0.06 1.02 6.16 -4.98 -0.03 0.99 16 19 C 0.45 10.79 7.82 -10.99 -0.09 10.70 16 20 O -0.57 -15.65 15.78 5.55 0.09 -15.56 16 21 N -0.59 -14.79 5.09 -10.97 -0.06 -14.85 16 22 C -0.30 -8.84 10.16 -14.93 -0.15 -8.99 16 23 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -26.42 13.96 55.50 0.77 -25.64 16 26 Si 0.88 20.09 27.74 -169.99 -4.71 15.37 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.27 -5.67 6.52 56.52 0.37 -5.31 16 30 H 0.07 0.80 7.25 -51.93 -0.38 0.42 16 31 H 0.05 0.41 7.92 -51.93 -0.41 0.00 16 32 H 0.07 0.75 7.02 -51.93 -0.36 0.39 16 33 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 34 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.51 8.05 -51.93 -0.42 0.09 16 37 H 0.10 0.80 8.05 -51.93 -0.42 0.39 16 38 H 0.08 0.43 5.86 -51.93 -0.30 0.13 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.23 7.86 -51.93 -0.41 0.82 16 46 H 0.05 0.84 6.35 -51.93 -0.33 0.51 16 47 H 0.08 1.28 7.11 -51.93 -0.37 0.91 16 48 H 0.34 5.91 8.49 -39.29 -0.33 5.58 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 51 H 0.37 8.22 5.76 -40.82 -0.24 7.98 16 52 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 401.87 15.07 6.06 6.06 Total: -1.00 -33.62 401.87 -9.45 -43.07 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -8.94 Total: 13.50 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.57 Total: 3.62 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.41 Total: -58.93 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.13 Total: -22.69 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.71 Total: 15.37 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.62 -9.45 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484614708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.886 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds