Wall clock time and date at job start Tue Mar 31 2020 20:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 115.54839 * 2 1 4 4 C 1.52994 * 117.50112 * 214.28548 * 2 1 3 5 5 C 1.52993 * 60.00426 * 252.51128 * 4 2 1 6 6 H 1.08993 * 117.50153 * 252.50801 * 5 4 2 7 7 C 1.50705 * 117.51734 * 107.47714 * 5 4 2 8 8 O 1.21283 * 119.99898 * 291.28928 * 7 5 4 9 9 N 1.34777 * 119.99975 * 111.28724 * 7 5 4 10 10 C 1.46924 * 120.62844 * 354.89898 * 9 7 5 11 11 C 1.53202 * 108.77522 * 233.58793 * 10 9 7 12 12 C 1.53044 * 109.30915 * 305.36902 * 11 10 9 13 13 C 1.53038 * 109.53907 * 61.36366 * 12 11 10 14 14 C 1.46927 * 120.63079 * 174.62192 * 9 7 5 15 15 H 1.08993 * 109.58426 * 246.19912 * 14 9 7 16 16 C 1.52997 * 109.58402 * 6.62387 * 14 9 7 17 17 N 1.46903 * 109.46815 * 181.24095 * 16 14 9 18 18 C 1.46902 * 111.00230 * 185.63495 * 17 16 14 19 19 C 1.50690 * 109.47384 * 179.97438 * 18 17 16 20 20 O 1.21294 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34782 * 120.00102 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00042 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00302 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00002 * 180.02562 * 22 21 19 25 25 N 1.31405 * 119.99925 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99924 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46945 * 89.99868 * 26 24 22 28 28 H 1.48498 * 109.46828 * 209.99738 * 26 24 22 29 29 H 1.48497 * 109.47028 * 330.00032 * 26 24 22 30 30 H 1.09003 * 109.47163 * 274.33405 * 1 2 3 31 31 H 1.09006 * 109.46841 * 34.33203 * 1 2 3 32 32 H 1.08994 * 109.46960 * 154.32956 * 1 2 3 33 33 H 1.09005 * 109.46878 * 205.66830 * 3 2 1 34 34 H 1.08996 * 109.47585 * 325.66530 * 3 2 1 35 35 H 1.08998 * 109.47412 * 85.67168 * 3 2 1 36 36 H 1.08997 * 117.49799 * 145.01837 * 4 2 1 37 37 H 1.09004 * 117.49859 * 0.02562 * 4 2 1 38 38 H 1.09001 * 109.58983 * 353.36885 * 10 9 7 39 39 H 1.08995 * 109.58637 * 113.66154 * 10 9 7 40 40 H 1.09003 * 109.49779 * 65.31272 * 11 10 9 41 41 H 1.08993 * 109.49818 * 185.38025 * 11 10 9 42 42 H 1.08999 * 109.45746 * 181.38956 * 12 11 10 43 43 H 1.09002 * 109.45522 * 301.35406 * 12 11 10 44 44 H 1.08997 * 109.50010 * 58.58970 * 13 12 11 45 45 H 1.09004 * 109.49422 * 178.68372 * 13 12 11 46 46 H 1.09001 * 109.47663 * 301.24031 * 16 14 9 47 47 H 1.09001 * 109.47148 * 61.24582 * 16 14 9 48 48 H 1.00898 * 111.00050 * 61.68556 * 17 16 14 49 49 H 1.09003 * 109.46922 * 300.00534 * 18 17 16 50 50 H 1.09002 * 109.47114 * 59.99802 * 18 17 16 51 51 H 0.97001 * 119.99948 * 0.02562 * 21 19 18 52 52 H 0.97010 * 120.00033 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1715 -0.8747 1.2687 7 6 1.3720 -2.1397 1.4621 8 8 0.1638 -2.0513 1.4041 9 7 1.9415 -3.1494 2.1497 10 6 3.3989 -3.3350 2.1373 11 6 3.7092 -4.7737 1.7122 12 6 2.9596 -5.7447 2.6273 13 6 1.4526 -5.5154 2.4920 14 6 1.1172 -4.0819 2.9306 15 1 1.3347 -3.9611 3.9918 16 6 -0.3637 -3.7974 2.6719 17 7 -1.1856 -4.7113 3.4765 18 6 -2.6109 -4.5589 3.1550 19 6 -3.4205 -5.5105 3.9975 20 8 -2.8649 -6.2434 4.7884 21 7 -4.7620 -5.5466 3.8729 22 6 -5.4986 -6.4128 4.6390 23 1 -5.0038 -7.0659 5.3426 24 6 -6.8816 -6.4504 4.5103 25 7 -7.5875 -7.2802 5.2449 26 14 -7.7373 -5.3212 3.2928 27 1 -7.8449 -6.0021 1.9775 28 1 -9.0964 -4.9930 3.7930 29 1 -6.9507 -4.0709 3.1400 30 1 -0.3633 0.0777 1.0247 31 1 -0.3633 0.8487 -0.5796 32 1 -0.3633 -0.9262 -0.4452 33 1 3.1823 1.3087 -0.4452 34 1 1.5810 2.0743 -0.5796 35 1 2.2766 1.7417 1.0247 36 1 3.1715 -0.8756 -1.2678 37 1 1.6112 -1.8588 -1.2678 38 1 3.8499 -2.6395 1.4294 39 1 3.7990 -3.1521 3.1346 40 1 3.3897 -4.9254 0.6812 41 1 4.7814 -4.9531 1.7909 42 1 3.1981 -6.7695 2.3426 43 1 3.2612 -5.5755 3.6610 44 1 1.1543 -5.6601 1.4537 45 1 0.9186 -6.2230 3.1264 46 1 -0.5896 -2.7674 2.9479 47 1 -0.5831 -3.9469 1.6147 48 1 -1.0206 -4.5732 4.4623 49 1 -2.9224 -3.5349 3.3616 50 1 -2.7713 -4.7816 2.1001 51 1 -5.2064 -4.9603 3.2407 52 1 -8.5531 -7.3067 5.1547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484614708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:23 Heat of formation + Delta-G solvation = -54.700816 kcal Electronic energy + Delta-G solvation = -30178.899903 eV Core-core repulsion = 26178.595779 eV Total energy + Delta-G solvation = -4000.304123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83119 -40.32823 -39.37877 -37.66650 -36.76537 -35.88516 -33.88064 -33.77855 -32.59070 -30.30103 -29.10985 -28.32130 -27.23013 -25.89983 -25.04777 -24.30815 -22.64328 -21.77604 -21.34348 -20.53692 -20.20581 -19.32898 -18.34531 -17.57364 -17.14885 -16.79895 -16.69795 -16.24912 -15.75339 -15.68344 -15.41876 -15.28606 -15.26540 -14.90541 -14.59283 -14.46671 -14.39986 -14.32327 -14.05823 -13.92765 -13.70180 -13.47311 -13.35123 -13.01018 -12.99296 -12.86007 -12.68829 -12.63052 -12.44134 -12.11506 -12.01128 -11.99533 -11.86969 -11.58914 -11.54541 -11.43772 -11.11910 -10.65646 -10.48055 -10.27869 -10.21046 -9.58732 -9.13177 -8.43883 -6.04454 1.28335 1.32649 1.41503 1.52459 1.88487 1.91119 2.20200 2.71435 2.82852 3.11891 3.36097 3.57147 3.70601 3.79123 3.87168 3.89203 3.98013 4.10387 4.13184 4.17207 4.22445 4.28946 4.29604 4.40593 4.50442 4.57812 4.65929 4.70683 4.77288 4.83640 4.86361 4.91370 4.99558 5.00943 5.04556 5.09475 5.10412 5.12770 5.14443 5.23278 5.27515 5.34207 5.46963 5.49710 5.54194 5.65361 5.86704 5.98472 6.34813 6.49504 6.56838 6.84472 7.25856 7.36036 7.91487 8.73634 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002630 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.257033 B =10644.614644 C =12463.808513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.133 4.133 5 C -0.189 4.189 6 H 0.147 0.853 7 C 0.530 3.470 8 O -0.560 6.560 9 N -0.604 5.604 10 C 0.105 3.895 11 C -0.128 4.128 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.154 3.846 15 H 0.073 0.927 16 C 0.086 3.914 17 N -0.684 5.684 18 C 0.070 3.930 19 C 0.452 3.548 20 O -0.610 6.610 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.058 0.942 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.963 3.037 27 H -0.257 1.257 28 H -0.271 1.271 29 H -0.237 1.237 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.341 0.659 49 H 0.066 0.934 50 H 0.103 0.897 51 H 0.388 0.612 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.212 18.573 -15.390 37.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.169 4.169 4 C -0.170 4.170 5 C -0.209 4.209 6 H 0.164 0.836 7 C 0.320 3.680 8 O -0.439 6.439 9 N -0.337 5.337 10 C -0.017 4.017 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.154 4.154 14 C 0.051 3.949 15 H 0.091 0.909 16 C -0.041 4.041 17 N -0.318 5.318 18 C -0.063 4.063 19 C 0.240 3.760 20 O -0.494 6.494 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.076 0.924 24 C -0.212 4.212 25 N -0.572 5.572 26 Si 0.783 3.217 27 H -0.181 1.181 28 H -0.196 1.196 29 H -0.160 1.160 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.159 0.841 49 H 0.083 0.917 50 H 0.121 0.879 51 H 0.224 0.776 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 27.870 17.514 -15.255 36.279 hybrid contribution -1.488 0.539 0.437 1.642 sum 26.381 18.053 -14.818 35.234 Atomic orbital electron populations 1.21250 0.92504 1.00737 1.01100 1.21664 0.94830 0.91919 1.02072 1.21387 1.00677 0.92376 1.02419 1.23257 1.03456 1.00363 0.89961 1.22455 1.02214 0.99984 0.96297 0.83579 1.20326 0.88082 0.81413 0.78192 1.90747 1.15868 1.75608 1.61690 1.48241 1.08681 1.28263 1.48544 1.22028 0.77917 0.98237 1.03505 1.21891 1.01648 0.93760 0.99297 1.21559 0.93565 1.00069 1.00615 1.21839 0.97293 0.95250 1.01022 1.21185 0.89517 0.89425 0.94800 0.90937 1.22386 0.91460 0.92871 0.97432 1.60063 1.04134 1.56771 1.10852 1.21465 0.88546 0.96518 0.99774 1.20830 0.82307 0.86762 0.86141 1.90525 1.71210 1.46207 1.41459 1.42049 1.06215 1.36955 1.38074 1.19022 0.90163 1.17191 1.19394 0.92411 1.26074 0.96227 0.99085 0.99794 1.69794 1.07751 1.38313 1.41373 0.85392 0.78691 0.79207 0.78428 1.18122 1.19619 1.16030 0.93648 0.92343 0.93739 0.90418 0.91456 0.92080 0.85063 0.89834 0.87269 0.90099 0.92200 0.88212 0.91361 0.91268 0.93245 0.91634 0.93744 0.91513 0.84072 0.91659 0.87865 0.77623 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 8.09 71.98 0.58 -1.36 16 2 C -0.10 -1.46 2.70 -52.18 -0.14 -1.60 16 3 C -0.11 -1.01 9.85 71.98 0.71 -0.30 16 4 C -0.13 -1.50 9.53 30.59 0.29 -1.21 16 5 C -0.19 -2.51 4.54 -11.54 -0.05 -2.56 16 6 H 0.15 1.15 7.07 -2.39 -0.02 1.14 16 7 C 0.53 10.97 7.37 87.66 0.65 11.62 16 8 O -0.56 -15.50 8.51 -3.04 -0.03 -15.53 16 9 N -0.60 -10.99 2.97 -794.22 -2.36 -13.35 16 10 C 0.10 1.07 6.25 86.37 0.54 1.61 16 11 C -0.13 -1.35 6.08 30.68 0.19 -1.16 16 12 C -0.12 -1.87 5.88 30.62 0.18 -1.69 16 13 C -0.12 -2.63 5.18 30.82 0.16 -2.47 16 14 C 0.15 3.57 3.18 45.12 0.14 3.71 16 15 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 16 C 0.09 2.51 3.52 86.30 0.30 2.81 16 17 N -0.68 -23.39 5.55 -517.93 -2.88 -26.27 16 18 C 0.07 2.54 6.16 85.55 0.53 3.06 16 19 C 0.45 22.03 7.82 87.65 0.69 22.72 16 20 O -0.61 -35.37 15.78 -3.07 -0.05 -35.42 16 21 N -0.59 -29.80 5.09 -306.98 -1.56 -31.37 16 22 C -0.33 -20.00 10.16 84.04 0.85 -19.14 16 23 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.93 -57.43 13.96 21.66 0.30 -57.13 16 26 Si 0.96 40.71 27.74 68.60 1.90 42.62 16 27 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.24 -8.71 6.52 99.48 0.65 -8.06 16 30 H 0.04 1.08 7.25 -2.39 -0.02 1.06 16 31 H 0.06 0.97 7.92 -2.38 -0.02 0.95 16 32 H 0.04 1.04 7.02 -2.39 -0.02 1.02 16 33 H 0.08 0.41 7.90 -2.38 -0.02 0.39 16 34 H 0.07 0.59 7.92 -2.39 -0.02 0.57 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.13 0.72 8.05 -2.39 -0.02 0.71 16 37 H 0.08 1.23 8.05 -2.38 -0.02 1.21 16 38 H 0.11 0.62 5.86 -2.39 -0.01 0.61 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.83 7.86 -2.39 -0.02 1.81 16 46 H 0.04 1.40 6.35 -2.39 -0.02 1.39 16 47 H 0.07 2.14 7.11 -2.39 -0.02 2.12 16 48 H 0.34 12.05 8.49 -89.70 -0.76 11.29 16 49 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 51 H 0.39 16.59 5.76 -92.71 -0.53 16.06 16 52 H 0.28 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -79.59 401.87 0.99 -78.60 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.43 Total: 44.08 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 6.08 Total: 13.77 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -6.49 Total: -128.12 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.07 Total: -50.95 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.90 Total: 42.62 kcal Total: -79.59 0.99 -78.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484614708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.901 kcal (2) G-P(sol) polarization free energy of solvation -79.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds