Wall clock time and date at job start Tue Mar 31 2020 20:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.67056 * 2 1 4 4 O 1.21286 * 120.00166 * 120.00272 * 3 2 1 5 5 N 1.34777 * 120.00204 * 299.99982 * 3 2 1 6 6 C 1.46498 * 120.00253 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47133 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.44626 * 295.04668 * 7 6 5 9 9 C 1.54873 * 109.44706 * 175.13171 * 7 6 5 10 10 C 1.47161 * 110.31226 * 168.73063 * 9 7 6 11 11 C 1.52568 * 114.34421 * 62.77725 * 10 9 7 12 12 C 1.50879 * 109.34371 * 274.99029 * 11 10 9 13 13 C 1.53941 * 110.09704 * 91.89403 * 12 11 10 14 14 N 1.44572 * 109.45097 * 54.99742 * 7 6 5 15 15 C 1.36929 * 118.64356 * 30.75855 * 14 7 6 16 16 H 1.08003 * 120.00280 * 27.58297 * 15 14 7 17 17 C 1.38813 * 119.99912 * 207.59035 * 15 14 7 18 18 N 1.31624 * 120.00480 * 14.61710 * 17 15 14 19 19 Si 1.86804 * 120.00023 * 194.61462 * 17 15 14 20 20 H 1.48506 * 109.47184 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47089 * 120.00110 * 19 17 15 22 22 H 1.48501 * 109.47529 * 239.99815 * 19 17 15 23 23 C 1.53344 * 109.67553 * 120.49691 * 2 1 3 24 24 C 1.52928 * 108.66410 * 52.25954 * 23 2 1 25 25 N 1.45753 * 110.50655 * 50.72692 * 24 23 2 26 26 C 1.33353 * 124.10629 * 340.91211 * 25 24 23 27 27 O 1.21282 * 118.24529 * 182.26518 * 26 25 24 28 28 C 1.50177 * 123.50965 * 2.24262 * 26 25 24 29 29 H 1.09005 * 109.46919 * 59.99760 * 1 2 3 30 30 H 1.09000 * 109.47474 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46831 * 300.00166 * 1 2 3 32 32 H 0.97000 * 119.99570 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47273 * 59.99398 * 6 5 3 34 34 H 1.09004 * 109.46942 * 299.99796 * 6 5 3 35 35 H 1.08997 * 109.32792 * 288.96411 * 9 7 6 36 36 H 1.08996 * 109.33298 * 48.44583 * 9 7 6 37 37 H 1.08995 * 108.48943 * 301.52441 * 10 9 7 38 38 H 1.09004 * 108.39442 * 183.95466 * 10 9 7 39 39 H 1.08997 * 109.49008 * 155.02906 * 11 10 9 40 40 H 1.08995 * 109.49393 * 34.94918 * 11 10 9 41 41 H 1.09002 * 109.37353 * 331.69776 * 12 11 10 42 42 H 1.09010 * 109.36557 * 212.07824 * 12 11 10 43 43 H 1.08998 * 108.94936 * 198.75201 * 13 12 11 44 44 H 1.08998 * 108.87887 * 80.06660 * 13 12 11 45 45 H 0.97000 * 120.00341 * 180.02562 * 18 17 15 46 46 H 1.08994 * 109.60654 * 171.99210 * 23 2 1 47 47 H 1.09003 * 109.60441 * 292.48356 * 23 2 1 48 48 H 1.08995 * 109.28500 * 290.40918 * 24 23 2 49 49 H 1.09004 * 109.13349 * 170.94183 * 24 23 2 50 50 H 0.97000 * 117.94270 * 160.92880 * 25 24 23 51 51 H 1.08997 * 109.40482 * 222.29210 * 28 26 25 52 52 H 1.09004 * 109.39873 * 102.54599 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4190 0.0000 4 8 2.7360 1.8133 0.9096 5 7 1.7146 2.2501 -1.0108 6 6 2.2082 3.6294 -1.0111 7 6 1.7001 4.3526 -2.2599 8 1 2.1319 3.8906 -3.1478 9 6 2.1187 5.8425 -2.1992 10 6 1.8808 6.4933 -3.4974 11 6 0.4164 6.5292 -3.9240 12 6 0.0650 5.2344 -4.6143 13 6 -0.4867 4.2233 -3.5931 14 7 0.2588 4.2558 -2.3194 15 6 -0.4437 4.1912 -1.1459 16 1 -0.0407 4.6396 -0.2498 17 6 -1.6738 3.5491 -1.1078 18 7 -2.0368 2.7626 -2.0989 19 14 -2.8143 3.8011 0.3501 20 1 -2.1776 4.7253 1.3227 21 1 -4.0967 4.3844 -0.1196 22 1 -3.0756 2.4947 1.0059 23 6 2.0463 -0.7328 1.2442 24 6 1.3760 -2.1054 1.3171 25 7 1.5041 -2.8044 0.0445 26 6 1.7815 -2.2043 -1.1136 27 8 1.8225 -2.8844 -2.1170 28 6 2.0453 -0.7315 -1.2420 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1561 1.9346 -1.7385 33 1 3.2982 3.6253 -1.0113 34 1 1.8470 4.1447 -0.1211 35 1 1.5367 6.3496 -1.4297 36 1 3.1776 5.9099 -1.9500 37 1 2.4505 5.9622 -4.2599 38 1 2.2502 7.5173 -3.4416 39 1 0.2576 7.3616 -4.6095 40 1 -0.2155 6.6558 -3.0450 41 1 0.9574 4.8221 -5.0854 42 1 -0.6892 5.4250 -5.3779 43 1 -0.4207 3.2210 -4.0163 44 1 -1.5333 4.4559 -3.3966 45 1 -2.8965 2.3143 -2.0725 46 1 3.1268 -0.8571 1.1733 47 1 1.7997 -0.1571 2.1363 48 1 0.3197 -1.9781 1.5535 49 1 1.8521 -2.6943 2.1011 50 1 1.3796 -3.7664 0.0397 51 1 1.5354 -0.3479 -2.1257 52 1 3.1175 -0.5631 -1.3425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570822621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:00 Heat of formation + Delta-G solvation = -66.924500 kcal Electronic energy + Delta-G solvation = -32302.885047 eV Core-core repulsion = 28302.050865 eV Total energy + Delta-G solvation = -4000.834182 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.82145 -39.10405 -38.11986 -36.45081 -34.51636 -33.78140 -33.48205 -31.65030 -30.70957 -29.64689 -27.75542 -26.98313 -25.71241 -24.43268 -23.51111 -22.99620 -21.69621 -20.05414 -19.53364 -19.18820 -18.27058 -17.51898 -16.50056 -16.32438 -15.89860 -15.56272 -15.41812 -15.09929 -14.63932 -14.60205 -14.38450 -14.08383 -13.62906 -13.55403 -13.45763 -13.22900 -12.97603 -12.64751 -12.45614 -12.11013 -11.97898 -11.82501 -11.61785 -11.47557 -11.35407 -11.25852 -11.12187 -10.93436 -10.79430 -10.69661 -10.60453 -10.22776 -10.06642 -10.04057 -9.99951 -9.72590 -9.59491 -9.55300 -9.12185 -9.05143 -8.45709 -8.23282 -6.74101 -5.85502 -3.29950 2.67740 3.15868 3.28107 3.29755 3.39891 3.42609 3.78074 4.42824 4.54820 4.65150 4.77345 4.84015 5.17518 5.19906 5.24878 5.31285 5.35193 5.42049 5.47298 5.51938 5.62624 5.67333 5.79030 5.87456 5.93031 5.99315 6.02885 6.07236 6.09224 6.13481 6.22923 6.29712 6.36582 6.54726 6.59802 6.63377 6.65581 6.69111 6.73158 6.73862 6.83030 6.96997 7.08327 7.21982 7.28869 7.39445 7.65043 7.78806 8.21732 8.26635 8.38686 8.86058 9.16759 9.81342 10.26560 11.20619 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011947 B = 0.004363 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.149632 B = 6416.451418 C = 7123.593404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C 0.522 3.478 4 O -0.562 6.562 5 N -0.685 5.685 6 C 0.128 3.872 7 C 0.173 3.827 8 H 0.044 0.956 9 C -0.136 4.136 10 C -0.101 4.101 11 C -0.106 4.106 12 C -0.143 4.143 13 C 0.180 3.820 14 N -0.583 5.583 15 C -0.246 4.246 16 H 0.063 0.937 17 C 0.013 3.987 18 N -0.900 5.900 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.111 4.111 24 C 0.108 3.892 25 N -0.720 5.720 26 C 0.529 3.471 27 O -0.560 6.560 28 C -0.123 4.123 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.024 0.976 44 H 0.075 0.925 45 H 0.252 0.748 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.397 0.603 51 H 0.109 0.891 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -4.004 2.181 7.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C 0.307 3.693 4 O -0.442 6.442 5 N -0.333 5.333 6 C 0.004 3.996 7 C 0.064 3.936 8 H 0.062 0.938 9 C -0.177 4.177 10 C -0.138 4.138 11 C -0.144 4.144 12 C -0.182 4.182 13 C 0.056 3.944 14 N -0.305 5.305 15 C -0.376 4.376 16 H 0.080 0.920 17 C -0.185 4.185 18 N -0.545 5.545 19 Si 0.718 3.282 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.149 4.149 24 C -0.016 4.016 25 N -0.372 5.372 26 C 0.317 3.683 27 O -0.439 6.439 28 C -0.163 4.163 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.232 0.768 51 H 0.127 0.873 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.777 -3.893 2.237 8.129 hybrid contribution -1.158 -0.201 0.553 1.298 sum 5.619 -4.094 2.790 7.491 Atomic orbital electron populations 1.21964 0.91064 1.02227 1.04976 1.20853 0.98371 0.93245 0.95711 1.20041 0.80303 0.86761 0.82186 1.90632 1.39634 1.77670 1.36297 1.45689 1.51257 1.11646 1.24736 1.21493 0.96041 0.81945 1.00149 1.20508 0.86273 0.92293 0.94535 0.93763 1.21384 0.99409 0.99112 0.97762 1.20300 0.96874 0.98989 0.97681 1.20939 0.96470 0.96566 1.00385 1.22071 0.99872 0.97234 0.99058 1.21014 0.96134 0.93971 0.83301 1.43730 0.98787 1.85081 1.02933 1.19064 1.01001 1.28702 0.88797 0.91967 1.24872 0.99593 0.97025 0.97018 1.70031 1.21692 1.30619 1.32166 0.86456 0.81348 0.77541 0.82840 1.20506 1.21818 1.21798 1.21723 1.00752 0.93918 0.98492 1.21483 1.01433 0.93782 0.84884 1.45459 1.72198 1.11566 1.07965 1.20013 0.75208 0.90538 0.82559 1.90753 1.52480 1.65255 1.35398 1.21728 1.04003 0.91018 0.99559 0.89509 0.92252 0.91754 0.75193 0.93243 0.91384 0.91864 0.93366 0.93528 0.94146 0.94250 0.90793 0.93838 0.93306 0.95763 0.90682 0.93791 0.90600 0.88779 0.91047 0.90464 0.76797 0.87257 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.72 37.16 0.29 -1.94 16 2 C -0.08 -1.12 0.63 -155.45 -0.10 -1.22 16 3 C 0.52 9.12 6.47 -10.99 -0.07 9.05 16 4 O -0.56 -11.24 15.90 5.55 0.09 -11.15 16 5 N -0.68 -12.23 4.53 -60.29 -0.27 -12.50 16 6 C 0.13 2.31 4.53 -4.04 -0.02 2.29 16 7 C 0.17 3.08 2.19 -67.97 -0.15 2.93 16 8 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 9 C -0.14 -2.19 5.07 -28.55 -0.14 -2.34 16 10 C -0.10 -1.53 5.16 -29.76 -0.15 -1.69 16 11 C -0.11 -1.74 5.51 -28.02 -0.15 -1.90 16 12 C -0.14 -2.47 5.71 -27.30 -0.16 -2.63 16 13 C 0.18 3.75 4.66 -2.94 -0.01 3.73 16 14 N -0.58 -11.96 1.78 -164.46 -0.29 -12.25 16 15 C -0.25 -5.69 7.66 -15.06 -0.12 -5.80 16 16 H 0.06 1.53 6.71 -52.48 -0.35 1.18 16 17 C 0.01 0.32 4.89 -17.43 -0.09 0.24 16 18 N -0.90 -22.26 11.02 55.49 0.61 -21.65 16 19 Si 0.89 20.25 29.58 -169.99 -5.03 15.22 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.11 -1.33 4.35 -26.59 -0.12 -1.44 16 24 C 0.11 1.02 6.38 -4.48 -0.03 0.99 16 25 N -0.72 -7.95 5.24 -61.38 -0.32 -8.27 16 26 C 0.53 7.59 7.15 -11.87 -0.08 7.51 16 27 O -0.56 -10.09 17.78 5.56 0.10 -9.99 16 28 C -0.12 -1.70 4.64 -28.10 -0.13 -1.83 16 29 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 30 H 0.06 0.82 5.90 -51.93 -0.31 0.51 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.41 7.69 7.24 -40.82 -0.30 7.39 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.37 6.82 -51.93 -0.35 1.02 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.70 8.11 -51.93 -0.42 0.27 16 37 H 0.05 0.68 7.36 -51.93 -0.38 0.30 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 41 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16 42 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 43 H 0.02 0.55 8.02 -51.93 -0.42 0.13 16 44 H 0.07 1.78 6.39 -51.93 -0.33 1.45 16 45 H 0.25 6.27 8.31 -40.82 -0.34 5.94 16 46 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 47 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 48 H 0.07 0.65 6.86 -51.93 -0.36 0.29 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.40 3.78 8.80 -40.82 -0.36 3.42 16 51 H 0.11 1.58 7.91 -51.93 -0.41 1.17 16 52 H 0.10 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -27.59 389.83 -9.39 -36.97 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -8.91 Total: 11.79 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.23 Total: 5.96 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.28 Total: -54.67 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.19 Total: -21.15 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.59 -9.39 -36.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570822621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.952 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds