Wall clock time and date at job start Tue Mar 31 2020 19:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 112.90816 * 2 1 4 4 C 1.53786 * 113.61310 * 228.74931 * 2 1 3 5 5 C 1.53780 * 87.07985 * 220.01820 * 4 2 1 6 6 C 1.53778 * 87.08374 * 25.43240 * 5 4 2 7 7 H 1.08996 * 113.69037 * 89.12818 * 6 5 4 8 8 C 1.50703 * 113.61583 * 220.01835 * 6 5 4 9 9 O 1.21283 * 119.99556 * 0.61361 * 8 6 5 10 10 N 1.34767 * 119.99997 * 180.61042 * 8 6 5 11 11 C 1.46500 * 120.00077 * 180.02562 * 10 8 6 12 12 H 1.08992 * 109.47475 * 34.99578 * 11 10 8 13 13 C 1.52997 * 109.47628 * 155.00033 * 11 10 8 14 14 N 1.46903 * 109.46966 * 305.00287 * 13 11 10 15 15 C 1.46902 * 110.99848 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.46779 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00134 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99931 * 179.72156 * 16 15 14 19 19 C 1.37098 * 120.00165 * 180.27792 * 18 16 15 20 20 H 1.08001 * 120.00000 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00034 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99805 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99818 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47379 * 90.00198 * 23 21 19 25 25 H 1.48504 * 109.46786 * 210.00035 * 23 21 19 26 26 H 1.48498 * 109.47115 * 329.99450 * 23 21 19 27 27 C 1.53001 * 109.46890 * 274.99817 * 11 10 8 28 28 C 1.53005 * 117.49714 * 128.74612 * 27 11 10 29 29 C 1.52999 * 117.49821 * 60.08574 * 27 11 10 30 30 H 1.08999 * 109.47274 * 288.74704 * 1 2 3 31 31 H 1.08998 * 109.47319 * 48.75015 * 1 2 3 32 32 H 1.09002 * 109.47302 * 168.74838 * 1 2 3 33 33 H 1.09007 * 109.47313 * 185.44913 * 3 2 1 34 34 H 1.09003 * 109.46919 * 305.44432 * 3 2 1 35 35 H 1.08990 * 109.47102 * 65.44601 * 3 2 1 36 36 H 1.08996 * 113.61486 * 334.56390 * 4 2 1 37 37 H 1.09005 * 113.61478 * 105.38971 * 4 2 1 38 38 H 1.09002 * 113.61269 * 270.88026 * 5 4 2 39 39 H 1.09004 * 113.61662 * 139.98249 * 5 4 2 40 40 H 0.97005 * 120.00101 * 359.97438 * 10 8 6 41 41 H 1.09000 * 109.47590 * 184.99751 * 13 11 10 42 42 H 1.09008 * 109.46899 * 64.99437 * 13 11 10 43 43 H 1.00901 * 110.99506 * 303.94319 * 14 13 11 44 44 H 1.08993 * 109.47510 * 59.99587 * 15 14 13 45 45 H 1.08998 * 109.46731 * 299.99008 * 15 14 13 46 46 H 0.97002 * 119.99710 * 0.27149 * 18 16 15 47 47 H 0.96999 * 119.99903 * 179.97438 * 22 21 19 48 48 H 1.08997 * 115.55226 * 274.41798 * 27 11 10 49 49 H 1.08993 * 117.49717 * 0.02562 * 28 27 11 50 50 H 1.09000 * 117.49425 * 145.02033 * 28 27 11 51 51 H 1.09004 * 117.50126 * 214.97585 * 29 27 11 52 52 H 1.08999 * 117.50092 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1459 -0.9291 -1.0594 5 6 3.1922 -1.3136 -0.0001 6 6 2.1460 -0.9291 1.0593 7 1 1.4940 -1.7527 1.3500 8 6 2.7253 -0.1960 2.2417 9 8 3.9132 0.0455 2.2828 10 7 1.9235 0.1912 3.2533 11 6 2.4866 0.9043 4.4025 12 1 3.2961 1.5524 4.0669 13 6 1.3959 1.7505 5.0621 14 7 0.7922 2.6389 4.0599 15 6 -0.2615 3.4690 4.6588 16 6 -0.8556 4.3654 3.6031 17 8 -0.4416 4.3178 2.4640 18 7 -1.8504 5.2164 3.9235 19 6 -2.3948 6.0279 2.9618 20 1 -2.0262 5.9855 1.9476 21 6 -3.4208 6.9049 3.2921 22 7 -3.9422 7.6830 2.3704 23 14 -4.0588 6.9776 5.0462 24 1 -3.2848 7.9866 5.8131 25 1 -5.4941 7.3584 5.0354 26 1 -3.9049 5.6457 5.6846 27 6 3.0291 -0.1070 5.4144 28 6 4.4630 0.0900 5.9107 29 6 4.1371 -1.0516 4.9443 30 1 -0.3634 0.3303 0.9731 31 1 -0.3634 0.6776 -0.7726 32 1 -0.3634 -1.0079 -0.2005 33 1 3.2093 1.3458 -0.0976 34 1 1.7179 1.9760 -0.8373 35 1 1.8736 1.9102 0.9346 36 1 1.4945 -1.7536 -1.3490 37 1 2.5637 -0.3989 -1.9153 38 1 4.0710 -0.6687 -0.0001 39 1 3.4443 -2.3741 0.0000 40 1 0.9734 -0.0016 3.2202 41 1 1.8335 2.3487 5.8614 42 1 0.6289 1.0960 5.4764 43 1 1.4938 3.2114 3.6148 44 1 0.1650 4.0791 5.4549 45 1 -1.0400 2.8267 5.0705 46 1 -2.1813 5.2547 4.8345 47 1 -4.6586 8.2949 2.6009 48 1 2.3005 -0.4995 6.1236 49 1 5.0195 0.9403 5.5167 50 1 4.6776 -0.1732 6.9464 51 1 4.1377 -2.0654 5.3447 52 1 4.4793 -0.9529 3.9141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670506921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:38 Heat of formation + Delta-G solvation = -31.442309 kcal Electronic energy + Delta-G solvation = -30486.510805 eV Core-core repulsion = 26487.215246 eV Total energy + Delta-G solvation = -3999.295559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84890 -39.02028 -38.39515 -37.01295 -35.66002 -34.05170 -33.54901 -31.68180 -30.64907 -29.78890 -27.33763 -27.08282 -26.02458 -23.96555 -22.64122 -22.41628 -22.17491 -21.06543 -20.35543 -19.39985 -18.49031 -18.24080 -17.17008 -16.57552 -16.11204 -15.88027 -15.39527 -15.02035 -14.89394 -14.86083 -14.49142 -14.25177 -13.95269 -13.48000 -13.40299 -13.19976 -13.05833 -13.03807 -12.82292 -12.40919 -12.15357 -12.10176 -11.89860 -11.82939 -11.71458 -11.52153 -11.49122 -11.43334 -11.26218 -11.18271 -10.79426 -10.61973 -10.46589 -10.40396 -10.31598 -10.09291 -9.99597 -9.59085 -9.48038 -8.89785 -8.61948 -8.23793 -8.18177 -6.33051 -3.84470 2.71366 3.00265 3.04491 3.12981 3.13803 3.71921 3.80957 3.97642 4.08297 4.39704 4.45229 4.60415 4.62333 4.69028 4.76756 4.82659 4.91765 5.00696 5.17116 5.18521 5.21356 5.25099 5.32006 5.43625 5.50066 5.54547 5.55827 5.59410 5.59848 5.75299 5.77504 5.79210 5.82860 5.85288 5.88839 5.89930 5.98307 6.03597 6.09752 6.15971 6.23045 6.26239 6.43510 6.53755 6.57390 6.99873 7.48131 7.56046 7.65519 8.12462 8.36705 8.57634 8.93127 9.40456 9.80593 10.80109 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.003037 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.564827 B = 9218.286091 C =11163.271292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.116 4.116 6 C -0.133 4.133 7 H 0.107 0.893 8 C 0.534 3.466 9 O -0.548 6.548 10 N -0.703 5.703 11 C 0.180 3.820 12 H 0.086 0.914 13 C 0.052 3.948 14 N -0.664 5.664 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.562 6.562 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.168 4.168 28 C -0.172 4.172 29 C -0.181 4.181 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.404 0.596 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.690 -19.373 4.824 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.061 4.061 3 C -0.191 4.191 4 C -0.174 4.174 5 C -0.153 4.153 6 C -0.154 4.154 7 H 0.125 0.875 8 C 0.321 3.679 9 O -0.427 6.427 10 N -0.352 5.352 11 C 0.074 3.926 12 H 0.104 0.896 13 C -0.078 4.078 14 N -0.296 5.296 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.443 6.443 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.188 4.188 28 C -0.210 4.210 29 C -0.218 4.218 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.239 0.761 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.171 0.829 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.121 0.879 49 H 0.112 0.888 50 H 0.109 0.891 51 H 0.103 0.897 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.202 -19.509 3.781 23.319 hybrid contribution -0.803 0.733 2.125 2.387 sum 11.400 -18.775 5.907 22.746 Atomic orbital electron populations 1.21770 0.93439 1.01330 1.03055 1.21695 0.95568 0.94762 0.94058 1.21650 1.00220 0.93862 1.03368 1.23053 0.98180 0.99175 0.96978 1.22740 0.97161 1.01496 0.93928 1.22953 1.00092 0.99585 0.92754 0.87519 1.20330 0.86471 0.78348 0.82746 1.90583 1.15909 1.56800 1.79404 1.45831 1.11875 1.58069 1.19467 1.20436 0.95769 0.91484 0.84874 0.89616 1.22243 0.96229 0.95759 0.93607 1.60062 1.15651 1.24611 1.29324 1.21711 0.95622 0.95467 0.95699 1.19688 0.83464 0.83724 0.89604 1.90572 1.62808 1.69902 1.21058 1.42208 1.33443 1.36548 1.10845 1.19423 1.15770 1.14647 0.93480 0.86297 1.25040 0.96813 0.96388 0.97923 1.69620 1.26148 1.23465 1.32898 0.86675 0.79631 0.78544 0.84540 1.19689 1.20183 1.19502 1.22644 0.91951 1.02356 1.01868 1.22919 0.97398 1.01457 0.99218 1.23279 1.02200 0.94335 1.01940 0.91720 0.92027 0.92885 0.92497 0.92029 0.91092 0.90100 0.91084 0.88781 0.91477 0.76104 0.93845 0.90486 0.82896 0.93792 0.89520 0.79749 0.91612 0.87931 0.88771 0.89133 0.89746 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 37.15 0.34 -1.18 16 2 C -0.06 -0.66 1.31 -153.70 -0.20 -0.86 16 3 C -0.13 -1.76 8.09 37.16 0.30 -1.46 16 4 C -0.14 -1.27 7.22 -25.92 -0.19 -1.46 16 5 C -0.12 -1.15 7.06 -25.92 -0.18 -1.33 16 6 C -0.13 -1.36 3.66 -90.96 -0.33 -1.69 16 7 H 0.11 0.92 8.10 -51.93 -0.42 0.50 16 8 C 0.53 6.44 5.19 -10.99 -0.06 6.38 16 9 O -0.55 -8.08 12.92 5.55 0.07 -8.01 16 10 N -0.70 -7.60 4.78 -53.81 -0.26 -7.86 16 11 C 0.18 1.92 2.51 -67.93 -0.17 1.75 16 12 H 0.09 1.10 7.34 -51.93 -0.38 0.72 16 13 C 0.05 0.54 5.22 -3.82 -0.02 0.52 16 14 N -0.66 -9.21 5.85 -115.06 -0.67 -9.89 16 15 C 0.05 0.73 6.17 -4.97 -0.03 0.70 16 16 C 0.45 9.76 7.82 -10.98 -0.09 9.67 16 17 O -0.56 -14.44 15.78 5.55 0.09 -14.35 16 18 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 19 C -0.30 -8.47 10.16 -14.93 -0.15 -8.62 16 20 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 23 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 27 C -0.17 -1.60 5.36 -90.62 -0.49 -2.09 16 28 C -0.17 -1.62 10.18 -26.69 -0.27 -1.90 16 29 C -0.18 -1.87 9.74 -26.69 -0.26 -2.13 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 33 H 0.06 0.75 7.31 -51.93 -0.38 0.37 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.09 7.69 -51.93 -0.40 0.69 16 36 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 37 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.09 1.09 6.89 -51.93 -0.36 0.73 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.35 5.44 8.43 -39.29 -0.33 5.11 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 49 H 0.09 0.94 8.05 -51.93 -0.42 0.53 16 50 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.12 1.52 5.02 -51.93 -0.26 1.26 16 LS Contribution 413.65 15.07 6.23 6.23 Total: -1.00 -31.79 413.65 -9.41 -41.20 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -8.99 Total: 19.48 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.89 Total: -2.69 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.21 Total: -56.24 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.16 Total: -22.36 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.79 -9.41 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670506921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.762 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds