Wall clock time and date at job start Tue Mar 31 2020 20:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.47199 * 119.78346 * 2 1 4 4 C 1.52985 * 108.66591 * 251.96729 * 3 2 1 5 5 C 1.51777 * 110.88081 * 273.53866 * 4 3 2 6 6 C 1.51878 * 113.82681 * 66.96290 * 5 4 3 7 7 C 1.53053 * 110.74041 * 293.22915 * 6 5 4 8 8 H 1.09001 * 109.80217 * 204.70062 * 7 6 5 9 9 C 1.50702 * 109.63303 * 325.19950 * 7 6 5 10 10 O 1.21280 * 119.99844 * 333.31369 * 9 7 6 11 11 N 1.34782 * 120.00155 * 153.30907 * 9 7 6 12 12 C 1.48142 * 127.83604 * 356.96278 * 11 9 7 13 13 C 1.54394 * 104.61694 * 140.43490 * 12 11 9 14 14 C 1.54282 * 104.96006 * 23.86372 * 13 12 11 15 15 C 1.52998 * 110.34248 * 118.87343 * 14 13 12 16 16 C 1.53001 * 110.34157 * 241.13161 * 14 13 12 17 17 N 1.46495 * 109.47088 * 298.54486 * 16 14 13 18 18 C 1.36942 * 120.00300 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99303 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00121 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00500 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46893 * 120.00350 * 22 20 18 25 25 H 1.48500 * 109.47104 * 240.00115 * 22 20 18 26 26 C 1.48139 * 127.83663 * 176.98556 * 11 9 7 27 27 C 1.33376 * 119.78552 * 179.97438 * 2 1 3 28 28 O 1.21275 * 119.88990 * 359.70643 * 27 2 1 29 29 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47499 * 300.02513 * 1 2 3 31 31 H 1.09002 * 109.47251 * 60.02528 * 1 2 3 32 32 H 1.08998 * 109.60176 * 11.72289 * 3 2 1 33 33 H 1.09001 * 109.60052 * 132.04963 * 3 2 1 34 34 H 1.09002 * 109.19457 * 33.90153 * 4 3 2 35 35 H 1.08995 * 109.19540 * 153.18185 * 4 3 2 36 36 H 1.09004 * 108.61799 * 188.11248 * 5 4 3 37 37 H 1.08999 * 108.61860 * 305.87912 * 5 4 3 38 38 H 1.09004 * 109.24290 * 172.89313 * 6 5 4 39 39 H 1.09007 * 109.20722 * 53.54338 * 6 5 4 40 40 H 1.09002 * 110.40990 * 21.64557 * 12 11 9 41 41 H 1.08998 * 110.50457 * 259.26813 * 12 11 9 42 42 H 1.09000 * 110.33817 * 264.99343 * 13 12 11 43 43 H 1.08996 * 110.34235 * 142.73978 * 13 12 11 44 44 H 1.09000 * 109.47470 * 61.45092 * 15 14 13 45 45 H 1.08997 * 109.47043 * 181.45398 * 15 14 13 46 46 H 1.09006 * 109.47104 * 301.44910 * 15 14 13 47 47 H 1.08995 * 109.47258 * 58.54585 * 16 14 13 48 48 H 1.09003 * 109.46842 * 178.54704 * 16 14 13 49 49 H 0.97007 * 120.00186 * 0.02562 * 17 16 14 50 50 H 0.97001 * 120.00576 * 180.02562 * 21 20 18 51 51 H 1.08997 * 110.40710 * 100.78150 * 26 11 9 52 52 H 1.09001 * 110.40781 * 338.34784 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1961 1.2776 0.0000 4 6 2.8287 1.4796 -1.3782 5 6 4.1869 0.8063 -1.4540 6 6 4.1249 -0.7096 -1.3836 7 6 3.6417 -1.1689 -0.0059 8 1 4.0012 -2.1783 0.1939 9 6 4.1595 -0.2285 1.0517 10 8 5.1842 0.3919 0.8624 11 7 3.4838 -0.0768 2.2080 12 6 2.1937 -0.6943 2.5943 13 6 2.3684 -1.0624 4.0835 14 6 3.4686 -0.1131 4.6020 15 6 2.9212 0.7742 5.7217 16 6 4.6730 -0.9157 5.0984 17 7 4.2616 -1.7761 6.2104 18 6 5.1772 -2.5915 6.8204 19 1 6.2027 -2.5998 6.4819 20 6 4.7875 -3.4063 7.8743 21 7 3.5378 -3.3958 8.2872 22 14 6.0365 -4.5191 8.7059 23 1 7.3619 -4.3459 8.0589 24 1 6.1375 -4.1620 10.1438 25 1 5.6029 -5.9335 8.5764 26 6 3.8623 0.7454 3.3807 27 6 2.1275 -1.1576 0.0005 28 8 1.5152 -2.2044 0.0064 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5142 0.8897 31 1 -0.3634 0.5134 -0.8902 32 1 1.5052 2.0943 0.2086 33 1 2.9747 1.2533 0.7625 34 1 2.1745 1.0536 -2.1388 35 1 2.9470 2.5469 -1.5652 36 1 4.6652 1.0921 -2.3909 37 1 4.8009 1.1675 -0.6290 38 1 5.1178 -1.1188 -1.5705 39 1 3.4372 -1.0762 -2.1458 40 1 2.0079 -1.5894 2.0008 41 1 1.3778 0.0180 2.4721 42 1 2.6860 -2.1004 4.1825 43 1 1.4380 -0.8965 4.6265 44 1 2.5984 0.1501 6.5550 45 1 3.7017 1.4560 6.0594 46 1 2.0735 1.3488 5.3484 47 1 5.0590 -1.5314 4.2862 48 1 5.4509 -0.2314 5.4371 49 1 3.3405 -1.7684 6.5147 50 1 3.2655 -3.9650 9.0239 51 1 3.3083 1.6841 3.3815 52 1 4.9355 0.9364 3.3804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724258599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:59 Heat of formation + Delta-G solvation = -24.296189 kcal Electronic energy + Delta-G solvation = -32358.803026 eV Core-core repulsion = 28359.817346 eV Total energy + Delta-G solvation = -3998.985680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.97578 -39.40867 -38.52089 -36.55949 -35.03937 -34.51813 -32.87636 -31.64858 -30.35100 -29.49459 -28.76147 -26.70202 -25.93571 -25.39204 -24.15362 -23.21352 -22.44303 -21.35780 -20.00589 -19.27166 -18.61273 -17.85271 -17.12319 -17.07226 -16.32108 -16.00687 -15.48983 -15.23407 -14.93461 -14.45506 -14.27197 -14.20899 -13.95111 -13.82166 -13.57301 -13.39722 -13.23652 -13.04412 -12.79212 -12.72960 -12.49330 -12.35650 -12.15420 -12.09631 -11.91568 -11.84433 -11.25420 -11.16661 -11.07709 -10.98913 -10.82247 -10.77621 -10.62909 -10.30405 -10.21750 -10.09832 -9.90787 -9.68428 -9.54348 -9.02152 -8.87027 -8.63118 -6.90439 -5.76146 -3.04040 2.30760 2.33899 2.68660 2.80020 3.44252 3.50469 3.52345 4.03589 4.19669 4.43473 4.48688 4.57041 4.69146 4.73721 4.80397 4.89587 4.94891 5.07890 5.11058 5.17393 5.20320 5.27345 5.33541 5.42940 5.47470 5.51233 5.56992 5.61041 5.63079 5.65174 5.71802 5.78343 5.82235 5.85594 5.87812 5.91837 6.09038 6.13416 6.21787 6.24022 6.34830 6.41983 6.57483 6.66324 6.78639 6.86433 7.01352 7.41803 7.72364 7.84606 7.94823 8.43135 9.54828 10.11972 10.47317 11.46813 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.003167 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.437073 B = 8838.421545 C = 8981.389465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.606 5.606 3 C 0.085 3.915 4 C -0.134 4.134 5 C -0.164 4.164 6 C -0.089 4.089 7 C -0.128 4.128 8 H 0.135 0.865 9 C 0.549 3.451 10 O -0.526 6.526 11 N -0.618 5.618 12 C 0.088 3.912 13 C -0.123 4.123 14 C -0.080 4.080 15 C -0.131 4.131 16 C 0.168 3.832 17 N -0.728 5.728 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.116 3.884 27 C 0.531 3.469 28 O -0.541 6.541 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.072 0.928 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 13.198 -20.073 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C -0.038 4.038 4 C -0.172 4.172 5 C -0.201 4.201 6 C -0.127 4.127 7 C -0.152 4.152 8 H 0.153 0.847 9 C 0.339 3.661 10 O -0.404 6.404 11 N -0.351 5.351 12 C -0.035 4.035 13 C -0.161 4.161 14 C -0.081 4.081 15 C -0.189 4.189 16 C 0.041 3.959 17 N -0.373 5.373 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.007 4.007 27 C 0.318 3.682 28 O -0.419 6.419 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.219 0.781 50 H 0.064 0.936 51 H 0.090 0.910 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.113 12.886 -20.235 24.756 hybrid contribution 0.232 -0.702 0.620 0.965 sum -5.882 12.184 -19.615 23.828 Atomic orbital electron populations 1.21765 0.78937 1.04552 1.01416 1.47693 1.07212 1.06233 1.72765 1.22350 0.97481 0.84976 0.98955 1.21734 0.97387 1.01378 0.96747 1.21826 0.98077 0.94581 1.05583 1.21050 1.02385 0.96980 0.92315 1.21964 0.93233 1.02848 0.97178 0.84709 1.19464 0.83333 0.81966 0.81296 1.90556 1.24373 1.47837 1.77662 1.49155 1.23132 1.47673 1.15160 1.22878 0.85004 0.98328 0.97260 1.22652 0.98991 1.01534 0.92938 1.21692 0.96880 0.95404 0.94102 1.21775 0.99866 0.99000 0.98213 1.20653 0.92564 0.91909 0.90795 1.42358 1.10602 1.47637 1.36731 1.19270 0.91638 1.15209 1.10724 0.91263 1.24702 0.96339 1.00527 0.99333 1.69657 1.15348 1.43067 1.30178 0.86138 0.80472 0.80513 0.79218 1.20590 1.21909 1.21889 1.22485 1.01863 0.93176 0.83150 1.19887 0.89412 0.83683 0.75184 1.90765 1.69327 1.31240 1.50557 0.89161 0.91883 0.92169 0.89534 0.88625 0.91709 0.90630 0.91753 0.86716 0.89818 0.91196 0.89519 0.91078 0.89429 0.90352 0.90929 0.92621 0.93418 0.96440 0.96275 0.78100 0.93612 0.91009 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.38 59.84 0.62 1.21 16 2 N -0.61 -5.79 1.50 -181.11 -0.27 -6.06 16 3 C 0.09 0.71 5.53 -3.67 -0.02 0.69 16 4 C -0.13 -1.04 5.74 -27.36 -0.16 -1.19 16 5 C -0.16 -1.51 5.15 -27.92 -0.14 -1.66 16 6 C -0.09 -0.88 5.25 -27.27 -0.14 -1.02 16 7 C -0.13 -1.52 2.96 -92.54 -0.27 -1.80 16 8 H 0.14 1.64 8.13 -51.93 -0.42 1.22 16 9 C 0.55 7.29 4.22 -10.98 -0.05 7.24 16 10 O -0.53 -7.93 13.74 5.56 0.08 -7.85 16 11 N -0.62 -8.00 2.05 -169.31 -0.35 -8.34 16 12 C 0.09 1.11 4.92 -2.41 -0.01 1.10 16 13 C -0.12 -1.84 5.78 -25.33 -0.15 -1.98 16 14 C -0.08 -1.21 0.73 -153.11 -0.11 -1.32 16 15 C -0.13 -1.87 8.07 37.16 0.30 -1.57 16 16 C 0.17 3.38 4.90 -4.04 -0.02 3.36 16 17 N -0.73 -18.03 4.93 -59.91 -0.30 -18.32 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 C 0.12 1.51 6.13 -2.41 -0.01 1.49 16 27 C 0.53 6.48 3.33 -11.25 -0.04 6.44 16 28 O -0.54 -8.29 15.45 5.56 0.09 -8.21 16 29 H 0.09 0.85 6.85 -51.93 -0.36 0.49 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.55 7.96 -51.93 -0.41 0.14 16 33 H 0.10 0.98 3.63 -51.93 -0.19 0.79 16 34 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.12 1.33 4.45 -53.35 -0.24 1.09 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 40 H 0.09 1.23 4.91 -51.93 -0.26 0.97 16 41 H 0.07 0.77 7.37 -51.93 -0.38 0.39 16 42 H 0.09 1.60 7.49 -51.93 -0.39 1.21 16 43 H 0.08 1.09 7.71 -51.93 -0.40 0.69 16 44 H 0.07 1.23 7.01 -51.93 -0.36 0.87 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.38 9.84 6.28 -40.82 -0.26 9.58 16 50 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 52 H 0.09 1.22 7.63 -51.93 -0.40 0.82 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -32.50 382.77 -8.38 -40.88 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.64 Total: 8.11 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.45 Total: 3.71 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.19 Total: -59.98 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.16 Total: -16.06 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.50 -8.38 -40.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724258599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.586 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds