Wall clock time and date at job start Tue Mar 31 2020 20:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47186 * 119.78465 * 2 1 4 4 C 1.52994 * 108.66860 * 251.96471 * 3 2 1 5 5 C 1.51780 * 110.88287 * 273.54123 * 4 3 2 6 6 C 1.52042 * 113.98680 * 66.94788 * 5 4 3 7 7 C 1.53066 * 110.61621 * 293.46274 * 6 5 4 8 8 H 1.09000 * 109.62865 * 204.49934 * 7 6 5 9 9 C 1.50701 * 109.62830 * 324.89799 * 7 6 5 10 10 O 1.21282 * 120.00252 * 338.34875 * 9 7 6 11 11 N 1.34777 * 119.99351 * 158.35738 * 9 7 6 12 12 C 1.47420 * 125.65151 * 356.24770 * 11 9 7 13 13 C 1.54916 * 104.83188 * 204.16764 * 12 11 9 14 14 C 1.55146 * 101.58363 * 322.99254 * 13 12 11 15 15 C 1.53002 * 110.87372 * 277.06877 * 14 13 12 16 16 C 1.52995 * 110.72180 * 153.86335 * 14 13 12 17 17 N 1.46499 * 109.47002 * 66.47917 * 16 14 13 18 18 C 1.36938 * 119.99902 * 179.72688 * 17 16 14 19 19 H 1.08000 * 120.00423 * 0.27353 * 18 17 16 20 20 C 1.38819 * 119.99744 * 180.27646 * 18 17 16 21 21 N 1.31619 * 119.99667 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00150 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47101 * 90.00055 * 22 20 18 24 24 H 1.48496 * 109.47195 * 210.00247 * 22 20 18 25 25 H 1.48498 * 109.46928 * 330.00110 * 22 20 18 26 26 C 1.47026 * 125.64675 * 176.29852 * 11 9 7 27 27 C 1.33379 * 119.78309 * 180.02562 * 2 1 3 28 28 O 1.21281 * 119.89573 * 359.70777 * 27 2 1 29 29 H 1.09008 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47457 * 299.97977 * 1 2 3 31 31 H 1.08998 * 109.47002 * 59.98194 * 1 2 3 32 32 H 1.08996 * 109.60966 * 11.72257 * 3 2 1 33 33 H 1.08999 * 109.60654 * 132.21434 * 3 2 1 34 34 H 1.09004 * 109.18986 * 33.89893 * 4 3 2 35 35 H 1.08996 * 109.19906 * 153.17295 * 4 3 2 36 36 H 1.08990 * 108.61434 * 188.11252 * 5 4 3 37 37 H 1.08996 * 108.61012 * 306.01507 * 5 4 3 38 38 H 1.08997 * 109.54530 * 173.00877 * 6 5 4 39 39 H 1.09006 * 109.02670 * 53.58263 * 6 5 4 40 40 H 1.08998 * 110.36918 * 323.00736 * 12 11 9 41 41 H 1.09001 * 110.36736 * 85.33127 * 12 11 9 42 42 H 1.09001 * 111.00209 * 204.91316 * 13 12 11 43 43 H 1.08997 * 110.99879 * 81.06924 * 13 12 11 44 44 H 1.09002 * 109.47078 * 296.04899 * 15 14 13 45 45 H 1.09004 * 109.47349 * 56.05173 * 15 14 13 46 46 H 1.09001 * 109.47392 * 176.04963 * 15 14 13 47 47 H 1.09001 * 109.47386 * 306.47976 * 16 14 13 48 48 H 1.08998 * 109.47523 * 186.47534 * 16 14 13 49 49 H 0.97000 * 120.00044 * 0.02562 * 17 16 14 50 50 H 0.97007 * 119.99863 * 179.97438 * 21 20 18 51 51 H 1.09004 * 109.88278 * 59.47749 * 26 11 9 52 52 H 1.09005 * 110.00738 * 298.39059 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1961 1.2774 0.0000 4 6 2.8288 1.4795 -1.3782 5 6 4.1870 0.8061 -1.4541 6 6 4.1291 -0.7115 -1.3836 7 6 3.6417 -1.1690 -0.0066 8 1 4.0012 -2.1786 0.1923 9 6 4.1595 -0.2293 1.0516 10 8 5.1347 0.4565 0.8290 11 7 3.5389 -0.1512 2.2454 12 6 2.3049 -0.8652 2.6207 13 6 1.6842 -0.0142 3.7567 14 6 2.9500 0.4573 4.5200 15 6 3.4274 -0.6166 5.4996 16 6 2.6819 1.7739 5.2516 17 7 1.7024 1.5495 6.3177 18 6 1.3088 2.5902 7.1159 19 1 1.7170 3.5773 6.9568 20 6 0.3850 2.3763 8.1298 21 7 0.0062 3.3766 8.8967 22 14 -0.3216 0.6691 8.4047 23 1 0.5336 -0.0716 9.3665 24 1 -1.6970 0.7849 8.9525 25 1 -0.3631 -0.0632 7.1135 26 6 3.9798 0.6611 3.3889 27 6 2.1275 -1.1576 -0.0005 28 8 1.5152 -2.2045 0.0044 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 1.5053 2.0943 0.2086 33 1 2.9766 1.2522 0.7605 34 1 2.1745 1.0534 -2.1388 35 1 2.9470 2.5468 -1.5654 36 1 4.6652 1.0920 -2.3908 37 1 4.8000 1.1655 -0.6276 38 1 5.1214 -1.1232 -1.5680 39 1 3.4422 -1.0768 -2.1471 40 1 1.6241 -0.9184 1.7712 41 1 2.5408 -1.8661 2.9821 42 1 1.0460 -0.6232 4.3969 43 1 1.1330 0.8347 3.3522 44 1 2.6670 -0.7747 6.2644 45 1 3.6006 -1.5485 4.9612 46 1 4.3549 -0.2918 5.9712 47 1 2.2904 2.5079 4.5472 48 1 3.6110 2.1450 5.6842 49 1 1.3360 0.6629 6.4609 50 1 -0.6396 3.2273 9.6050 51 1 4.0152 1.7129 3.1047 52 1 4.9651 0.3337 3.7210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724258600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:03 Heat of formation + Delta-G solvation = -13.715284 kcal Electronic energy + Delta-G solvation = -32481.365569 eV Core-core repulsion = 28482.838712 eV Total energy + Delta-G solvation = -3998.526857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.17702 -39.57081 -38.73371 -36.60258 -35.28338 -34.60361 -32.95766 -31.71733 -30.77624 -29.63169 -28.80132 -26.98453 -26.29755 -25.53652 -24.16868 -23.22299 -22.19536 -21.28319 -20.14803 -19.48185 -18.88977 -18.02755 -17.50938 -17.11217 -16.67209 -16.06200 -15.61697 -15.45661 -14.84382 -14.51487 -14.32386 -14.24632 -14.13808 -13.95613 -13.68672 -13.50041 -13.30676 -13.26201 -12.85802 -12.77985 -12.50091 -12.39430 -12.24372 -12.18713 -12.11766 -11.89417 -11.71438 -11.45853 -11.23372 -11.13618 -10.93586 -10.85811 -10.70290 -10.45904 -10.42020 -10.13494 -10.08533 -9.62784 -9.58529 -9.02101 -8.94748 -8.66092 -7.28024 -5.81149 -3.16807 2.14487 2.25582 2.61912 2.71955 3.31728 3.34512 3.41313 3.95287 4.06771 4.36892 4.48262 4.52590 4.54144 4.56456 4.72598 4.77019 4.86904 4.93995 5.10835 5.14700 5.15482 5.21568 5.24606 5.30851 5.39369 5.42891 5.49558 5.52624 5.58127 5.60869 5.62321 5.65847 5.69131 5.80180 5.81553 5.84044 5.86928 6.00182 6.08364 6.09213 6.17318 6.23213 6.37615 6.40749 6.56640 6.64237 6.95372 7.26227 7.73946 7.84238 7.94777 8.37718 9.16548 9.88645 10.08292 11.37292 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.003390 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.425637 B = 8258.100080 C = 8543.282503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.088 3.912 4 C -0.134 4.134 5 C -0.172 4.172 6 C -0.089 4.089 7 C -0.128 4.128 8 H 0.132 0.868 9 C 0.539 3.461 10 O -0.522 6.522 11 N -0.612 5.612 12 C 0.072 3.928 13 C -0.114 4.114 14 C -0.082 4.082 15 C -0.134 4.134 16 C 0.175 3.825 17 N -0.752 5.752 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.882 3.118 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.119 3.881 27 C 0.532 3.468 28 O -0.543 6.543 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.029 0.971 48 H 0.031 0.969 49 H 0.361 0.639 50 H 0.260 0.740 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 -8.464 -22.051 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C -0.035 4.035 4 C -0.172 4.172 5 C -0.208 4.208 6 C -0.127 4.127 7 C -0.152 4.152 8 H 0.150 0.850 9 C 0.329 3.671 10 O -0.401 6.401 11 N -0.345 5.345 12 C -0.051 4.051 13 C -0.152 4.152 14 C -0.083 4.083 15 C -0.191 4.191 16 C 0.047 3.953 17 N -0.398 5.398 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.003 4.003 27 C 0.321 3.679 28 O -0.422 6.422 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.047 0.953 48 H 0.049 0.951 49 H 0.195 0.805 50 H 0.070 0.930 51 H 0.093 0.907 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.462 -8.416 -22.139 24.550 hybrid contribution -0.733 -1.180 0.336 1.429 sum 5.729 -9.596 -21.803 24.500 Atomic orbital electron populations 1.21819 0.78649 1.04533 1.01974 1.47817 1.07469 1.06317 1.72466 1.22310 0.97371 0.85013 0.98771 1.21729 0.97291 1.01576 0.96619 1.22017 0.98439 0.94390 1.05998 1.21083 1.02137 0.97258 0.92186 1.21943 0.93304 1.02535 0.97388 0.85028 1.19542 0.83208 0.82816 0.81553 1.90480 1.27305 1.44576 1.77780 1.48677 1.26918 1.46266 1.12663 1.23061 0.86024 0.96225 0.99775 1.22801 0.96972 0.99782 0.95622 1.21867 0.94076 0.98095 0.94274 1.21772 1.01895 0.96896 0.98526 1.20558 0.93041 0.91711 0.89979 1.42679 1.50458 1.08999 1.37652 1.19045 1.19738 0.90457 1.08153 0.89213 1.24657 0.99505 0.96771 0.98078 1.69699 1.36245 1.29915 1.22273 0.86595 0.78876 0.85539 0.77768 1.21037 1.21689 1.20384 1.22052 0.97893 0.95699 0.84682 1.19759 0.89386 0.83735 0.75070 1.90767 1.69322 1.31255 1.50815 0.89221 0.91403 0.91922 0.89110 0.88900 0.91788 0.90450 0.91865 0.85768 0.89930 0.91292 0.88722 0.91192 0.89722 0.90104 0.91731 0.93197 0.92009 0.95306 0.95120 0.80527 0.93028 0.90721 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.17 59.85 0.61 1.23 16 2 N -0.61 -5.96 1.78 -181.11 -0.32 -6.28 16 3 C 0.09 0.80 5.74 -3.67 -0.02 0.78 16 4 C -0.13 -1.09 5.74 -27.35 -0.16 -1.24 16 5 C -0.17 -1.54 5.16 -27.84 -0.14 -1.68 16 6 C -0.09 -0.78 5.30 -27.19 -0.14 -0.93 16 7 C -0.13 -1.32 2.91 -92.53 -0.27 -1.59 16 8 H 0.13 1.26 8.13 -51.93 -0.42 0.84 16 9 C 0.54 6.32 4.14 -10.98 -0.05 6.28 16 10 O -0.52 -7.06 13.33 5.56 0.07 -6.99 16 11 N -0.61 -7.19 2.33 -170.51 -0.40 -7.59 16 12 C 0.07 0.84 5.78 -2.53 -0.01 0.83 16 13 C -0.11 -1.49 5.72 -24.58 -0.14 -1.63 16 14 C -0.08 -1.14 0.61 -152.68 -0.09 -1.23 16 15 C -0.13 -1.81 8.23 37.16 0.31 -1.51 16 16 C 0.17 3.10 5.08 -4.04 -0.02 3.08 16 17 N -0.75 -16.71 4.97 -59.91 -0.30 -17.01 16 18 C -0.24 -6.67 10.47 -15.06 -0.16 -6.82 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 22 Si 0.88 21.47 27.74 -169.99 -4.71 16.75 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 26 C 0.12 1.49 6.05 -3.06 -0.02 1.47 16 27 C 0.53 6.06 3.31 -11.25 -0.04 6.03 16 28 O -0.54 -7.68 15.97 5.56 0.09 -7.59 16 29 H 0.09 0.87 6.85 -51.92 -0.36 0.51 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.73 7.96 -51.93 -0.41 0.31 16 33 H 0.09 1.01 3.71 -51.93 -0.19 0.81 16 34 H 0.06 0.51 8.05 -51.93 -0.42 0.10 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.13 1.39 4.24 -55.26 -0.23 1.16 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.58 7.87 -51.93 -0.41 0.18 16 40 H 0.10 1.12 2.92 -51.93 -0.15 0.97 16 41 H 0.07 0.82 7.74 -51.93 -0.40 0.42 16 42 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 43 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16 44 H 0.06 0.98 6.76 -51.93 -0.35 0.63 16 45 H 0.05 0.59 7.49 -51.93 -0.39 0.21 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.36 7.83 4.09 -40.82 -0.17 7.67 16 50 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 51 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 52 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -32.04 379.71 -8.04 -40.08 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.52 Total: 7.81 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.44 Total: 3.12 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.24 Total: -58.91 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.16 Total: -14.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.04 -8.04 -40.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724258600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.368 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds