Wall clock time and date at job start Tue Mar 31 2020 20:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47193 * 119.78623 * 2 1 4 4 C 1.52987 * 108.66348 * 108.06760 * 3 2 1 5 5 C 1.51772 * 110.84627 * 86.48785 * 4 3 2 6 6 C 1.51837 * 113.82189 * 292.94977 * 5 4 3 7 7 C 1.53062 * 110.70751 * 66.84181 * 6 5 4 8 8 H 1.08999 * 109.79566 * 155.28915 * 7 6 5 9 9 C 1.50697 * 109.63572 * 34.78763 * 7 6 5 10 10 O 1.21282 * 119.99701 * 26.49023 * 9 7 6 11 11 N 1.34771 * 120.00503 * 206.49096 * 9 7 6 12 12 C 1.48118 * 127.03017 * 2.62275 * 11 9 7 13 13 C 1.54600 * 103.42379 * 219.28902 * 12 11 9 14 14 C 1.54610 * 102.91136 * 322.87147 * 13 12 11 15 15 C 1.53004 * 110.32795 * 262.80349 * 14 13 12 16 16 C 1.53000 * 110.32965 * 140.59157 * 14 13 12 17 17 N 1.46504 * 109.46922 * 64.37430 * 16 14 13 18 18 C 1.36940 * 119.99715 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00212 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99980 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99673 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00177 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47028 * 60.00244 * 22 20 18 24 24 H 1.48501 * 109.47326 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47200 * 300.00465 * 22 20 18 26 26 C 1.47485 * 127.03611 * 182.94669 * 11 9 7 27 27 C 1.33367 * 119.78341 * 180.02562 * 2 1 3 28 28 O 1.21278 * 119.89721 * 0.26383 * 27 2 1 29 29 H 1.08998 * 109.47509 * 89.99494 * 1 2 3 30 30 H 1.09000 * 109.47548 * 209.99454 * 1 2 3 31 31 H 1.09007 * 109.47216 * 329.99704 * 1 2 3 32 32 H 1.08999 * 109.60609 * 348.31467 * 3 2 1 33 33 H 1.09002 * 109.74273 * 227.90174 * 3 2 1 34 34 H 1.08997 * 109.20073 * 206.83127 * 4 3 2 35 35 H 1.09001 * 109.19234 * 326.15420 * 4 3 2 36 36 H 1.09006 * 108.61738 * 54.09227 * 5 4 3 37 37 H 1.08997 * 108.61811 * 171.85363 * 5 4 3 38 38 H 1.09001 * 109.23614 * 306.52979 * 6 5 4 39 39 H 1.08996 * 109.24222 * 187.15939 * 6 5 4 40 40 H 1.08994 * 110.66587 * 337.77421 * 12 11 9 41 41 H 1.08999 * 110.66097 * 100.88919 * 12 11 9 42 42 H 1.09004 * 110.83366 * 204.44732 * 13 12 11 43 43 H 1.09002 * 110.72896 * 81.24688 * 13 12 11 44 44 H 1.08996 * 109.47413 * 175.61887 * 15 14 13 45 45 H 1.09002 * 109.47271 * 295.62472 * 15 14 13 46 46 H 1.09002 * 109.46589 * 55.62069 * 15 14 13 47 47 H 1.08994 * 109.47913 * 184.37713 * 16 14 13 48 48 H 1.08998 * 109.46952 * 304.38168 * 16 14 13 49 49 H 0.96999 * 120.00180 * 0.02562 * 17 16 14 50 50 H 0.97000 * 120.00029 * 179.97438 * 21 20 18 51 51 H 1.09001 * 109.91398 * 273.87249 * 26 11 9 52 52 H 1.08998 * 109.91767 * 35.15386 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1962 1.2775 0.0000 4 6 2.8295 1.4790 1.3780 5 6 4.1878 0.8059 1.4518 6 6 4.1257 -0.7096 1.3824 7 6 3.6417 -1.1689 0.0049 8 1 4.0010 -2.1784 -0.1950 9 6 4.1589 -0.2286 -1.0531 10 8 5.1819 0.3944 -0.8629 11 7 3.4847 -0.0800 -2.2106 12 6 2.2005 -0.7172 -2.5830 13 6 2.3950 -1.0713 -4.0753 14 6 3.2111 0.1275 -4.6113 15 6 2.2842 1.1458 -5.2783 16 6 4.2742 -0.3532 -5.6011 17 7 3.6201 -0.9365 -6.7751 18 6 4.3757 -1.4378 -7.8013 19 1 5.4537 -1.4036 -7.7450 20 6 3.7560 -1.9910 -8.9135 21 7 2.4423 -2.0332 -8.9818 22 14 4.7866 -2.6755 -10.3129 23 1 5.6504 -3.7701 -9.8021 24 1 3.8920 -3.2055 -11.3732 25 1 5.6367 -1.5958 -10.8758 26 6 3.8780 0.7451 -3.3680 27 6 2.1275 -1.1575 -0.0005 28 8 1.5152 -2.2044 -0.0058 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8900 0.5139 32 1 1.5052 2.0944 -0.2080 33 1 2.9760 1.2553 -0.7612 34 1 2.9478 2.5462 1.5655 35 1 2.1761 1.0519 2.1386 36 1 4.8007 1.1675 0.6261 37 1 4.6673 1.0915 2.3880 38 1 3.4385 -1.0762 2.1449 39 1 5.1187 -1.1187 1.5686 40 1 2.0330 -1.6184 -1.9934 41 1 1.3741 -0.0171 -2.4606 42 1 1.4342 -1.1430 -4.5852 43 1 2.9570 -1.9992 -4.1816 44 1 2.8618 2.0191 -5.5813 45 1 1.8201 0.6949 -6.1555 46 1 1.5102 1.4489 -4.5732 47 1 4.8908 0.4907 -5.9105 48 1 4.9015 -1.1057 -5.1234 49 1 2.6520 -0.9676 -6.8255 50 1 2.0092 -2.4194 -9.7591 51 1 3.5297 1.7687 -3.2298 52 1 4.9618 0.7313 -3.4827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724258601.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:06 Heat of formation + Delta-G solvation = -25.040266 kcal Electronic energy + Delta-G solvation = -32234.150106 eV Core-core repulsion = 28235.132161 eV Total energy + Delta-G solvation = -3999.017945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02309 -39.43850 -38.56575 -36.59428 -35.09837 -34.56013 -32.88817 -31.67697 -30.37675 -29.46004 -28.77248 -26.75243 -26.04324 -25.37300 -24.17960 -23.24173 -22.44201 -21.35936 -20.03422 -19.27781 -18.68023 -17.87171 -17.12634 -17.08572 -16.35414 -16.12232 -15.52296 -15.18770 -14.92158 -14.46168 -14.31824 -14.23349 -13.95594 -13.84897 -13.60830 -13.51598 -13.17173 -13.04898 -12.90002 -12.76017 -12.50857 -12.32109 -12.21894 -12.13434 -11.93828 -11.71662 -11.38404 -11.21322 -11.10644 -11.01782 -10.81781 -10.79276 -10.63337 -10.31638 -10.27160 -10.13958 -9.94115 -9.69801 -9.56756 -9.03835 -8.87370 -8.64717 -6.92193 -5.77191 -3.05221 2.28013 2.29988 2.66182 2.78041 3.44430 3.48931 3.49759 4.00580 4.16057 4.40312 4.46994 4.55894 4.66520 4.71102 4.77106 4.86527 4.91977 5.04151 5.05162 5.14293 5.21199 5.28899 5.30642 5.39822 5.44434 5.48445 5.55917 5.58969 5.60384 5.63168 5.70713 5.79785 5.81710 5.84279 5.86586 5.94559 6.06098 6.11573 6.19969 6.24400 6.34084 6.38021 6.49988 6.64439 6.75538 6.83562 6.99575 7.37023 7.69913 7.81911 7.91303 8.42107 9.53605 10.10595 10.45877 11.45666 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.002972 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.356099 B = 9418.259024 C = 9717.171444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.605 5.605 3 C 0.085 3.915 4 C -0.135 4.135 5 C -0.164 4.164 6 C -0.089 4.089 7 C -0.128 4.128 8 H 0.134 0.866 9 C 0.545 3.455 10 O -0.526 6.526 11 N -0.616 5.616 12 C 0.084 3.916 13 C -0.117 4.117 14 C -0.079 4.079 15 C -0.132 4.132 16 C 0.168 3.832 17 N -0.728 5.728 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.117 3.883 27 C 0.530 3.470 28 O -0.541 6.541 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.021 0.979 48 H 0.019 0.981 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.068 0.932 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 8.872 23.016 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C -0.038 4.038 4 C -0.173 4.173 5 C -0.201 4.201 6 C -0.127 4.127 7 C -0.152 4.152 8 H 0.152 0.848 9 C 0.335 3.665 10 O -0.405 6.405 11 N -0.349 5.349 12 C -0.038 4.038 13 C -0.155 4.155 14 C -0.080 4.080 15 C -0.189 4.189 16 C 0.040 3.960 17 N -0.373 5.373 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.006 4.006 27 C 0.317 3.683 28 O -0.419 6.419 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.073 8.604 23.092 24.833 hybrid contribution 0.120 -0.441 -0.863 0.977 sum -2.953 8.162 22.229 23.863 Atomic orbital electron populations 1.21744 0.78781 1.03263 1.02365 1.47716 1.07232 1.06236 1.72604 1.22372 0.97560 0.84953 0.98930 1.21748 0.97377 1.01420 0.96749 1.21827 0.98112 0.94559 1.05613 1.21043 1.02332 0.97019 0.92318 1.21967 0.93322 1.02722 0.97212 0.84804 1.19505 0.83402 0.82159 0.81448 1.90555 1.24551 1.47668 1.77691 1.49024 1.23337 1.47515 1.15073 1.23011 0.85319 0.98090 0.97400 1.22710 1.01374 0.98752 0.92670 1.21663 0.96737 0.95492 0.94117 1.21804 0.98241 0.98159 1.00697 1.20692 0.92431 0.95367 0.87529 1.42339 1.06105 1.71837 1.17019 1.19183 0.90545 1.31352 0.95986 0.91329 1.24710 0.95624 1.01921 0.98605 1.69639 1.07066 1.51073 1.30496 0.86272 0.79016 0.78862 0.82064 1.21310 1.21712 1.21300 1.22199 1.01036 0.93633 0.83719 1.19859 0.89350 0.83654 0.75399 1.90771 1.69418 1.31231 1.50515 0.92167 0.90276 0.91114 0.89454 0.88640 0.90594 0.91680 0.86674 0.91761 0.91185 0.89865 0.89339 0.90764 0.89685 0.90102 0.92613 0.90780 0.93572 0.96166 0.96284 0.78072 0.93490 0.91361 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.20 59.85 0.61 1.23 16 2 N -0.61 -5.66 1.50 -181.11 -0.27 -5.94 16 3 C 0.08 0.70 5.52 -3.67 -0.02 0.68 16 4 C -0.13 -1.01 5.74 -27.36 -0.16 -1.17 16 5 C -0.16 -1.47 5.15 -27.94 -0.14 -1.61 16 6 C -0.09 -0.83 5.26 -27.29 -0.14 -0.97 16 7 C -0.13 -1.44 2.93 -92.54 -0.27 -1.71 16 8 H 0.13 1.49 8.13 -51.93 -0.42 1.07 16 9 C 0.54 6.94 4.19 -10.99 -0.05 6.89 16 10 O -0.53 -7.68 13.79 5.56 0.08 -7.60 16 11 N -0.62 -7.79 2.04 -169.98 -0.35 -8.14 16 12 C 0.08 1.05 4.92 -2.31 -0.01 1.04 16 13 C -0.12 -1.74 5.72 -25.04 -0.14 -1.88 16 14 C -0.08 -1.19 0.67 -153.14 -0.10 -1.30 16 15 C -0.13 -1.88 8.05 37.16 0.30 -1.58 16 16 C 0.17 3.29 4.85 -4.04 -0.02 3.27 16 17 N -0.73 -17.79 5.12 -59.91 -0.31 -18.10 16 18 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.12 1.54 6.28 -2.98 -0.02 1.53 16 27 C 0.53 6.23 3.32 -11.25 -0.04 6.20 16 28 O -0.54 -8.03 15.68 5.56 0.09 -7.95 16 29 H 0.06 0.45 7.64 -51.93 -0.40 0.05 16 30 H 0.08 0.70 7.38 -51.93 -0.38 0.31 16 31 H 0.07 0.38 8.03 -51.92 -0.42 -0.04 16 32 H 0.09 0.56 7.92 -51.93 -0.41 0.15 16 33 H 0.10 0.97 3.64 -51.93 -0.19 0.78 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 8.05 -51.93 -0.42 0.07 16 36 H 0.12 1.30 4.43 -53.44 -0.24 1.06 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.61 7.86 -51.93 -0.41 0.21 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.20 4.91 -51.93 -0.25 0.95 16 41 H 0.07 0.83 6.91 -51.93 -0.36 0.47 16 42 H 0.08 1.27 7.85 -51.93 -0.41 0.87 16 43 H 0.08 1.39 7.84 -51.93 -0.41 0.98 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.26 6.75 -51.93 -0.35 0.91 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 49 H 0.38 9.73 6.18 -40.82 -0.25 9.47 16 50 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 51 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 52 H 0.08 1.17 7.62 -51.93 -0.40 0.77 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -32.07 382.28 -8.36 -40.43 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.61 Total: 7.86 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.45 Total: 3.36 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.20 Total: -59.23 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.16 Total: -15.55 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.07 -8.36 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724258601.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.390 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds