Wall clock time and date at job start Tue Mar 31 2020 20:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46679 * 2 1 4 4 C 1.50698 * 110.43298 * 62.10866 * 3 2 1 5 5 O 1.21284 * 119.99803 * 247.43465 * 4 3 2 6 6 N 1.34774 * 120.00484 * 67.44057 * 4 3 2 7 7 C 1.45340 * 120.35250 * 4.32742 * 6 4 3 8 8 C 1.53045 * 108.62784 * 223.25823 * 7 6 4 9 9 C 1.52874 * 109.24517 * 77.97405 * 8 7 6 10 10 C 1.53966 * 109.71926 * 287.12413 * 9 8 7 11 11 C 1.52451 * 110.73182 * 315.64786 * 10 9 8 12 12 C 1.53797 * 109.42195 * 113.72595 * 11 10 9 13 13 H 1.09002 * 109.52120 * 42.03648 * 12 11 10 14 14 N 1.46495 * 109.52175 * 162.22485 * 12 11 10 15 15 C 1.36946 * 119.99813 * 274.68473 * 14 12 11 16 16 H 1.07997 * 119.99670 * 0.02562 * 15 14 12 17 17 C 1.38808 * 119.99920 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00047 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46984 * 60.00563 * 19 17 15 21 21 H 1.48503 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47371 * 300.00279 * 19 17 15 23 23 C 1.46953 * 120.35539 * 184.61023 * 6 4 3 24 24 C 1.54627 * 110.48327 * 184.64689 * 3 2 1 25 25 C 1.54483 * 101.76492 * 143.60977 * 24 3 2 26 26 N 1.46763 * 105.47203 * 334.58325 * 25 24 3 27 27 C 1.34423 * 111.30045 * 17.01689 * 26 25 24 28 28 O 1.21282 * 124.94135 * 179.63225 * 27 26 25 29 29 H 1.09001 * 109.46539 * 189.13831 * 1 2 3 30 30 H 1.09001 * 109.46935 * 309.13219 * 1 2 3 31 31 H 1.08995 * 109.47306 * 69.13567 * 1 2 3 32 32 H 1.08995 * 109.47065 * 240.00375 * 2 1 3 33 33 H 1.09000 * 109.47219 * 119.99953 * 2 1 3 34 34 H 1.09003 * 109.67376 * 343.08320 * 7 6 4 35 35 H 1.08998 * 109.67230 * 103.61793 * 7 6 4 36 36 H 1.09001 * 109.55379 * 318.05118 * 8 7 6 37 37 H 1.08999 * 109.58822 * 197.91894 * 8 7 6 38 38 H 1.09002 * 109.43204 * 167.04900 * 9 8 7 39 39 H 1.09005 * 109.39072 * 47.17691 * 9 8 7 40 40 H 1.08997 * 109.22701 * 195.32687 * 10 9 8 41 41 H 1.08997 * 109.22343 * 75.96916 * 10 9 8 42 42 H 1.09008 * 109.47781 * 353.74103 * 11 10 9 43 43 H 1.08996 * 109.47833 * 233.71633 * 11 10 9 44 44 H 0.96990 * 120.00466 * 94.68703 * 14 12 11 45 45 H 0.97001 * 119.99674 * 179.97438 * 18 17 15 46 46 H 1.09005 * 109.53503 * 188.25897 * 23 6 4 47 47 H 1.09007 * 109.53656 * 308.41225 * 23 6 4 48 48 H 1.09001 * 110.97002 * 25.48800 * 24 3 2 49 49 H 1.09003 * 111.00276 * 261.74490 * 24 3 2 50 50 H 1.08998 * 110.24450 * 93.58382 * 25 24 3 51 51 H 1.08999 * 110.24540 * 215.58389 * 25 24 3 52 52 H 0.96992 * 124.34964 * 197.01888 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5924 2.1588 1.2481 5 8 0.7920 3.0668 1.1722 6 7 2.0817 1.7904 2.4487 7 6 3.1103 0.7677 2.5401 8 6 2.7608 -0.1755 3.6937 9 6 1.6656 -1.1412 3.2408 10 6 0.3236 -0.3935 3.1380 11 6 0.1136 0.5074 4.3498 12 6 0.1337 1.9788 3.9028 13 1 -0.4266 2.0849 2.9738 14 7 -0.4747 2.8142 4.9410 15 6 -1.8330 2.9862 4.9729 16 1 -2.4555 2.5055 4.2328 17 6 -2.4095 3.7773 5.9569 18 7 -1.6507 4.3627 6.8592 19 14 -4.2621 4.0125 6.0000 20 1 -4.9247 2.6939 6.1660 21 1 -4.6229 4.8940 7.1393 22 1 -4.7116 4.6359 4.7294 23 6 1.5764 2.4140 3.6796 24 6 3.5815 1.4716 -0.1174 25 6 3.8067 2.7185 -1.0011 26 7 2.5703 2.8781 -1.7755 27 6 1.5602 2.1767 -1.2326 28 8 0.4289 2.1376 -1.6681 29 1 -0.3632 -1.0147 0.1632 30 1 -0.3633 0.6486 0.7972 31 1 -0.3633 0.3660 -0.9602 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.1529 0.2056 1.6072 35 1 4.0762 1.2348 2.7321 36 1 2.4043 0.4052 4.5444 37 1 3.6462 -0.7406 3.9847 38 1 1.5748 -1.9515 3.9642 39 1 1.9268 -1.5531 2.2659 40 1 -0.4882 -1.1189 3.0851 41 1 0.3200 0.2148 2.2336 42 1 0.9114 0.3362 5.0727 43 1 -0.8483 0.2801 4.8093 44 1 0.0844 3.2456 5.6059 45 1 -2.0536 4.9159 7.5466 46 1 2.1873 2.0984 4.5255 47 1 1.6203 3.4989 3.5832 48 1 3.9522 0.5725 -0.6096 49 1 4.0455 1.5978 0.8609 50 1 3.9775 3.5965 -0.3781 51 1 4.6527 2.5592 -1.6697 52 1 2.4921 3.4199 -2.5761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088328811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:58 Heat of formation + Delta-G solvation = -30.451314 kcal Electronic energy + Delta-G solvation = -33164.007640 eV Core-core repulsion = 29164.755054 eV Total energy + Delta-G solvation = -3999.252586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.84384 -39.57818 -37.36253 -36.57200 -35.28396 -34.24156 -33.90195 -32.06774 -30.31363 -29.59014 -27.96425 -27.25995 -26.18253 -23.89051 -23.49965 -22.99922 -22.09317 -21.29509 -20.49022 -19.51476 -18.58937 -17.55006 -17.21166 -17.04323 -16.12170 -15.92540 -15.53329 -15.03791 -14.79655 -14.48435 -14.38056 -13.99038 -13.68540 -13.62824 -13.58471 -13.53448 -13.24501 -12.98100 -12.92199 -12.82448 -12.37800 -12.17200 -11.91421 -11.86367 -11.58320 -11.32416 -11.14756 -11.07106 -10.88914 -10.86069 -10.72699 -10.49343 -10.47646 -10.14367 -10.06339 -9.88727 -9.71225 -9.59253 -9.33344 -9.25171 -8.80680 -8.30085 -6.87659 -5.68561 -2.96461 2.40388 2.68581 3.05037 3.29568 3.51780 3.55238 3.57935 3.92298 4.10813 4.26565 4.47865 4.62676 4.69732 4.76136 4.87812 4.95653 5.03059 5.13607 5.21564 5.24760 5.30422 5.31577 5.42223 5.44820 5.47883 5.56742 5.63621 5.66084 5.79583 5.85787 5.88192 5.93639 5.97024 6.03194 6.06740 6.12584 6.23790 6.34729 6.46093 6.52593 6.60439 6.62706 6.74442 6.81104 6.89369 7.04899 7.22750 7.54223 7.81084 8.16785 8.31186 8.50494 9.61347 10.16889 10.51990 11.54241 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.004139 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.573453 B = 6763.784002 C = 7466.472919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.110 4.110 3 C -0.116 4.116 4 C 0.534 3.466 5 O -0.508 6.508 6 N -0.597 5.597 7 C 0.092 3.908 8 C -0.153 4.153 9 C -0.116 4.116 10 C -0.136 4.136 11 C -0.141 4.141 12 C 0.164 3.836 13 H 0.059 0.941 14 N -0.720 5.720 15 C -0.229 4.229 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.936 5.936 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.286 1.286 23 C 0.112 3.888 24 C -0.141 4.141 25 C 0.101 3.899 26 N -0.733 5.733 27 C 0.549 3.451 28 O -0.503 6.503 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.382 0.618 45 H 0.254 0.746 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.105 0.895 50 H 0.073 0.927 51 H 0.083 0.917 52 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.146 -11.734 -14.246 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.148 4.148 3 C -0.123 4.123 4 C 0.319 3.681 5 O -0.382 6.382 6 N -0.332 5.332 7 C -0.031 4.031 8 C -0.191 4.191 9 C -0.153 4.153 10 C -0.174 4.174 11 C -0.181 4.181 12 C 0.053 3.947 13 H 0.077 0.923 14 N -0.360 5.360 15 C -0.361 4.361 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.585 5.585 19 Si 0.736 3.264 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.010 4.010 24 C -0.179 4.179 25 C -0.024 4.024 26 N -0.390 5.390 27 C 0.332 3.668 28 O -0.376 6.376 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.215 0.785 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.114 0.886 49 H 0.123 0.877 50 H 0.091 0.909 51 H 0.102 0.898 52 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 17.901 -11.284 -14.430 25.613 hybrid contribution -0.705 0.468 0.091 0.851 sum 17.196 -10.816 -14.339 24.866 Atomic orbital electron populations 1.22089 0.93929 1.01762 1.04629 1.21783 0.98375 0.91105 1.03489 1.21702 0.97384 0.98898 0.94304 1.19559 0.81607 0.83552 0.83396 1.90849 1.32530 1.28920 1.85877 1.47661 1.39694 1.39741 1.06060 1.21989 0.90669 0.89915 1.00554 1.22311 0.99122 0.98291 0.99363 1.21788 0.95465 0.97699 1.00389 1.22059 0.95700 0.98797 1.00857 1.22515 1.01804 0.97174 0.96587 1.20672 0.91105 0.89412 0.93490 0.92270 1.42257 1.04814 1.56815 1.32125 1.19169 0.83207 1.24033 1.09670 0.91343 1.24690 0.97668 1.00376 0.98170 1.69648 1.33834 1.36748 1.18247 0.86290 0.85654 0.77497 0.76944 1.21346 1.21749 1.21248 1.21936 0.96400 0.98148 0.84534 1.23196 0.93079 0.99168 1.02428 1.22072 0.87220 0.98384 0.94711 1.46076 1.11509 1.50994 1.30425 1.19924 0.84408 0.78649 0.83778 1.90713 1.18816 1.62510 1.65593 0.92559 0.91536 0.90297 0.90851 0.89231 0.89064 0.91681 0.88995 0.91165 0.92223 0.92435 0.93200 0.90591 0.92509 0.91741 0.78491 0.93607 0.90087 0.90629 0.88623 0.87693 0.90918 0.89836 0.74938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 8.15 37.16 0.30 -2.01 16 2 C -0.11 -1.16 4.23 -26.73 -0.11 -1.28 16 3 C -0.12 -1.36 0.28 -155.67 -0.04 -1.41 16 4 C 0.53 8.29 3.97 -10.99 -0.04 8.25 16 5 O -0.51 -10.81 15.07 5.55 0.08 -10.73 16 6 N -0.60 -7.98 1.69 -174.61 -0.29 -8.27 16 7 C 0.09 0.82 3.80 -4.64 -0.02 0.80 16 8 C -0.15 -1.43 5.45 -26.77 -0.15 -1.58 16 9 C -0.12 -1.20 5.31 -26.29 -0.14 -1.34 16 10 C -0.14 -1.94 5.21 -26.51 -0.14 -2.08 16 11 C -0.14 -2.49 5.09 -26.60 -0.14 -2.63 16 12 C 0.16 3.38 2.40 -67.86 -0.16 3.22 16 13 H 0.06 1.42 6.29 -51.93 -0.33 1.09 16 14 N -0.72 -18.49 5.13 -53.35 -0.27 -18.77 16 15 C -0.23 -6.65 9.89 -15.06 -0.15 -6.80 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.94 -28.80 13.06 55.49 0.72 -28.07 16 19 Si 0.90 23.43 29.55 -169.99 -5.02 18.41 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 C 0.11 1.87 4.64 -4.13 -0.02 1.86 16 24 C -0.14 -0.98 4.89 -25.10 -0.12 -1.10 16 25 C 0.10 0.70 7.78 -3.12 -0.02 0.67 16 26 N -0.73 -7.44 6.24 -59.20 -0.37 -7.80 16 27 C 0.55 7.80 6.47 -10.86 -0.07 7.73 16 28 O -0.50 -9.20 15.25 5.56 0.08 -9.11 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.13 5.28 -51.93 -0.27 0.86 16 31 H 0.08 1.23 5.96 -51.93 -0.31 0.92 16 32 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 33 H 0.09 0.82 2.57 -51.93 -0.13 0.68 16 34 H 0.09 0.66 3.09 -51.93 -0.16 0.50 16 35 H 0.07 0.45 7.58 -51.93 -0.39 0.05 16 36 H 0.09 1.06 3.35 -51.93 -0.17 0.88 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.50 5.99 -51.93 -0.31 0.19 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.14 1.15 -51.93 -0.06 1.08 16 42 H 0.06 0.92 5.47 -51.92 -0.28 0.64 16 43 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 44 H 0.38 10.19 7.80 -40.82 -0.32 9.88 16 45 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.08 1.18 6.07 -51.93 -0.32 0.86 16 47 H 0.08 1.45 8.05 -51.92 -0.42 1.03 16 48 H 0.10 0.42 7.89 -51.93 -0.41 0.01 16 49 H 0.10 0.62 4.93 -51.93 -0.26 0.37 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.41 3.48 8.96 -40.82 -0.37 3.12 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -37.03 362.00 -8.17 -45.19 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -7.43 Total: 11.91 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.12 Total: 1.80 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.21 Total: -62.92 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.17 Total: -19.84 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.03 -8.17 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088328811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.741 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds