Wall clock time and date at job start Tue Mar 31 2020 20:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46679 * 2 1 4 4 C 1.50698 * 110.43298 * 62.10866 * 3 2 1 5 5 O 1.21284 * 119.99803 * 247.43465 * 4 3 2 6 6 N 1.34774 * 120.00484 * 67.44057 * 4 3 2 7 7 C 1.45340 * 120.35250 * 4.32742 * 6 4 3 8 8 C 1.53045 * 108.62784 * 223.25823 * 7 6 4 9 9 C 1.52874 * 109.24517 * 77.97405 * 8 7 6 10 10 C 1.53966 * 109.71926 * 287.12413 * 9 8 7 11 11 C 1.52451 * 110.73182 * 315.64786 * 10 9 8 12 12 C 1.53797 * 109.42195 * 113.72595 * 11 10 9 13 13 H 1.09002 * 109.52120 * 42.03648 * 12 11 10 14 14 N 1.46495 * 109.52175 * 162.22485 * 12 11 10 15 15 C 1.36946 * 119.99813 * 274.68473 * 14 12 11 16 16 H 1.07997 * 119.99670 * 0.02562 * 15 14 12 17 17 C 1.38808 * 119.99920 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00047 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46984 * 60.00563 * 19 17 15 21 21 H 1.48503 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47371 * 300.00279 * 19 17 15 23 23 C 1.46953 * 120.35539 * 184.61023 * 6 4 3 24 24 C 1.54627 * 110.48327 * 184.64689 * 3 2 1 25 25 C 1.54483 * 101.76492 * 143.60977 * 24 3 2 26 26 N 1.46763 * 105.47203 * 334.58325 * 25 24 3 27 27 C 1.34423 * 111.30045 * 17.01689 * 26 25 24 28 28 O 1.21282 * 124.94135 * 179.63225 * 27 26 25 29 29 H 1.09001 * 109.46539 * 189.13831 * 1 2 3 30 30 H 1.09001 * 109.46935 * 309.13219 * 1 2 3 31 31 H 1.08995 * 109.47306 * 69.13567 * 1 2 3 32 32 H 1.08995 * 109.47065 * 240.00375 * 2 1 3 33 33 H 1.09000 * 109.47219 * 119.99953 * 2 1 3 34 34 H 1.09003 * 109.67376 * 343.08320 * 7 6 4 35 35 H 1.08998 * 109.67230 * 103.61793 * 7 6 4 36 36 H 1.09001 * 109.55379 * 318.05118 * 8 7 6 37 37 H 1.08999 * 109.58822 * 197.91894 * 8 7 6 38 38 H 1.09002 * 109.43204 * 167.04900 * 9 8 7 39 39 H 1.09005 * 109.39072 * 47.17691 * 9 8 7 40 40 H 1.08997 * 109.22701 * 195.32687 * 10 9 8 41 41 H 1.08997 * 109.22343 * 75.96916 * 10 9 8 42 42 H 1.09008 * 109.47781 * 353.74103 * 11 10 9 43 43 H 1.08996 * 109.47833 * 233.71633 * 11 10 9 44 44 H 0.96990 * 120.00466 * 94.68703 * 14 12 11 45 45 H 0.97001 * 119.99674 * 179.97438 * 18 17 15 46 46 H 1.09005 * 109.53503 * 188.25897 * 23 6 4 47 47 H 1.09007 * 109.53656 * 308.41225 * 23 6 4 48 48 H 1.09001 * 110.97002 * 25.48800 * 24 3 2 49 49 H 1.09003 * 111.00276 * 261.74490 * 24 3 2 50 50 H 1.08998 * 110.24450 * 93.58382 * 25 24 3 51 51 H 1.08999 * 110.24540 * 215.58389 * 25 24 3 52 52 H 0.96992 * 124.34964 * 197.01888 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5924 2.1588 1.2481 5 8 0.7920 3.0668 1.1722 6 7 2.0817 1.7904 2.4487 7 6 3.1103 0.7677 2.5401 8 6 2.7608 -0.1755 3.6937 9 6 1.6656 -1.1412 3.2408 10 6 0.3236 -0.3935 3.1380 11 6 0.1136 0.5074 4.3498 12 6 0.1337 1.9788 3.9028 13 1 -0.4266 2.0849 2.9738 14 7 -0.4747 2.8142 4.9410 15 6 -1.8330 2.9862 4.9729 16 1 -2.4555 2.5055 4.2328 17 6 -2.4095 3.7773 5.9569 18 7 -1.6507 4.3627 6.8592 19 14 -4.2621 4.0125 6.0000 20 1 -4.9247 2.6939 6.1660 21 1 -4.6229 4.8940 7.1393 22 1 -4.7116 4.6359 4.7294 23 6 1.5764 2.4140 3.6796 24 6 3.5815 1.4716 -0.1174 25 6 3.8067 2.7185 -1.0011 26 7 2.5703 2.8781 -1.7755 27 6 1.5602 2.1767 -1.2326 28 8 0.4289 2.1376 -1.6681 29 1 -0.3632 -1.0147 0.1632 30 1 -0.3633 0.6486 0.7972 31 1 -0.3633 0.3660 -0.9602 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.1529 0.2056 1.6072 35 1 4.0762 1.2348 2.7321 36 1 2.4043 0.4052 4.5444 37 1 3.6462 -0.7406 3.9847 38 1 1.5748 -1.9515 3.9642 39 1 1.9268 -1.5531 2.2659 40 1 -0.4882 -1.1189 3.0851 41 1 0.3200 0.2148 2.2336 42 1 0.9114 0.3362 5.0727 43 1 -0.8483 0.2801 4.8093 44 1 0.0844 3.2456 5.6059 45 1 -2.0536 4.9159 7.5466 46 1 2.1873 2.0984 4.5255 47 1 1.6203 3.4989 3.5832 48 1 3.9522 0.5725 -0.6096 49 1 4.0455 1.5978 0.8609 50 1 3.9775 3.5965 -0.3781 51 1 4.6527 2.5592 -1.6697 52 1 2.4921 3.4199 -2.5761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088328811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:57 Heat of formation + Delta-G solvation = -59.955374 kcal Electronic energy + Delta-G solvation = -33165.287032 eV Core-core repulsion = 29164.755054 eV Total energy + Delta-G solvation = -4000.531978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.84433 -40.66650 -38.65132 -37.62880 -36.76207 -35.35770 -35.13170 -33.85601 -31.47848 -30.93754 -29.19590 -28.33171 -27.26023 -25.80677 -24.53924 -24.04572 -22.97259 -22.53621 -21.75549 -20.59493 -19.76324 -19.16542 -18.46631 -18.09904 -17.34644 -17.14511 -16.72171 -16.36741 -16.01403 -15.70464 -15.44346 -15.21564 -15.10926 -15.02130 -14.69177 -14.57292 -14.48084 -14.26185 -14.03350 -13.76550 -13.63254 -13.26198 -13.07194 -12.98336 -12.87677 -12.76973 -12.51811 -12.36996 -12.31566 -12.23176 -11.99517 -11.89514 -11.79020 -11.63323 -11.48790 -11.38650 -11.12343 -10.97799 -10.79609 -10.43035 -10.07239 -9.52291 -9.00806 -7.99062 -5.26364 1.33006 1.39060 1.42867 1.48819 1.54114 2.06991 2.41482 2.52951 3.08187 3.33037 3.39864 3.45889 3.66994 3.83033 3.97770 4.01242 4.10637 4.12451 4.19192 4.21995 4.30208 4.34210 4.41121 4.49632 4.52082 4.61515 4.67367 4.71068 4.73561 4.86748 4.87110 4.88434 4.96318 4.98282 5.04658 5.07454 5.17795 5.22226 5.25620 5.33429 5.42160 5.42658 5.52059 5.58788 5.64394 5.76668 5.83944 6.00387 6.24513 6.45248 7.15823 7.23480 7.29967 8.04534 8.30026 9.23806 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.004139 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.573453 B = 6763.784002 C = 7466.472919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C -0.113 4.113 4 C 0.529 3.471 5 O -0.583 6.583 6 N -0.587 5.587 7 C 0.080 3.920 8 C -0.152 4.152 9 C -0.111 4.111 10 C -0.138 4.138 11 C -0.127 4.127 12 C 0.165 3.835 13 H 0.015 0.985 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.055 0.945 17 C -0.068 4.068 18 N -0.964 5.964 19 Si 0.965 3.035 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.288 1.288 23 C 0.125 3.875 24 C -0.132 4.132 25 C 0.093 3.907 26 N -0.725 5.725 27 C 0.529 3.471 28 O -0.562 6.562 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.375 0.625 45 H 0.253 0.747 46 H 0.112 0.888 47 H 0.041 0.959 48 H 0.140 0.860 49 H 0.123 0.877 50 H 0.066 0.934 51 H 0.129 0.871 52 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.547 -14.709 -15.022 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.141 4.141 3 C -0.120 4.120 4 C 0.317 3.683 5 O -0.462 6.462 6 N -0.319 5.319 7 C -0.041 4.041 8 C -0.189 4.189 9 C -0.148 4.148 10 C -0.175 4.175 11 C -0.167 4.167 12 C 0.056 3.944 13 H 0.033 0.967 14 N -0.372 5.372 15 C -0.370 4.370 16 H 0.073 0.927 17 C -0.261 4.261 18 N -0.614 5.614 19 Si 0.794 3.206 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.215 1.215 23 C 0.002 3.998 24 C -0.169 4.169 25 C -0.030 4.030 26 N -0.380 5.380 27 C 0.314 3.686 28 O -0.440 6.440 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.207 0.793 45 H 0.062 0.938 46 H 0.130 0.870 47 H 0.060 0.940 48 H 0.158 0.842 49 H 0.141 0.859 50 H 0.085 0.915 51 H 0.147 0.853 52 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 22.407 -14.316 -15.226 30.641 hybrid contribution -2.071 1.415 0.270 2.523 sum 20.336 -12.901 -14.956 28.349 Atomic orbital electron populations 1.22010 0.97134 1.01418 1.01550 1.21864 0.95444 0.90757 1.06061 1.21698 1.01172 0.98391 0.90714 1.20342 0.80300 0.82689 0.85003 1.90816 1.35829 1.32505 1.87048 1.47661 1.39980 1.40119 1.04132 1.22524 0.90504 0.89108 1.01950 1.22315 1.00212 0.98068 0.98289 1.21809 0.92823 0.97649 1.02530 1.22048 0.98788 0.98249 0.98464 1.22295 1.00378 0.95473 0.98537 1.20775 0.92762 0.90669 0.90202 0.96683 1.42378 1.03835 1.57814 1.33182 1.19360 0.84887 1.23586 1.09123 0.92653 1.25416 1.01876 1.00620 0.98156 1.69775 1.35299 1.37546 1.18813 0.85338 0.80809 0.77705 0.76710 1.20288 1.21077 1.21504 1.21520 0.94442 0.96552 0.87318 1.23425 0.88469 1.01027 1.03993 1.22434 0.86820 0.98429 0.95342 1.46205 1.11964 1.49433 1.30360 1.20540 0.84265 0.79224 0.84561 1.90677 1.21281 1.64708 1.67351 0.90854 0.95795 0.92783 0.87417 0.87070 0.86437 0.87799 0.91472 0.86935 0.91219 0.89489 0.93862 0.91318 0.90360 0.95833 0.79301 0.93849 0.87017 0.94015 0.84205 0.85902 0.91521 0.85344 0.74368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 8.15 71.98 0.59 -4.05 16 2 C -0.10 -1.89 4.23 30.60 0.13 -1.76 16 3 C -0.11 -2.44 0.28 -52.93 -0.02 -2.45 16 4 C 0.53 16.58 3.97 87.66 0.35 16.93 16 5 O -0.58 -26.88 15.07 -3.04 -0.05 -26.93 16 6 N -0.59 -14.91 1.69 -824.72 -1.39 -16.30 16 7 C 0.08 1.00 3.80 86.61 0.33 1.33 16 8 C -0.15 -2.04 5.45 30.57 0.17 -1.87 16 9 C -0.11 -1.82 5.31 30.88 0.16 -1.66 16 10 C -0.14 -3.86 5.21 30.74 0.16 -3.70 16 11 C -0.13 -4.65 5.09 30.68 0.16 -4.49 16 12 C 0.17 7.26 2.40 45.04 0.11 7.36 16 13 H 0.02 0.80 6.29 -2.39 -0.02 0.78 16 14 N -0.73 -40.08 5.13 -322.71 -1.65 -41.73 16 15 C -0.24 -14.60 9.89 84.03 0.83 -13.77 16 16 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 17 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 18 N -0.96 -61.30 13.06 21.65 0.28 -61.02 16 19 Si 0.97 49.93 29.55 68.60 2.03 51.95 16 20 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 21 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 23 C 0.13 4.29 4.64 86.07 0.40 4.69 16 24 C -0.13 -1.11 4.89 31.65 0.15 -0.96 16 25 C 0.09 0.91 7.78 86.83 0.68 1.58 16 26 N -0.72 -13.67 6.24 -459.80 -2.87 -16.54 16 27 C 0.53 15.09 6.47 87.90 0.57 15.66 16 28 O -0.56 -21.95 15.25 -3.03 -0.05 -21.99 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.02 0.87 5.28 -2.39 -0.01 0.85 16 31 H 0.05 1.79 5.96 -2.39 -0.01 1.78 16 32 H 0.11 1.31 8.11 -2.39 -0.02 1.29 16 33 H 0.11 1.47 2.57 -2.39 -0.01 1.46 16 34 H 0.12 0.90 3.09 -2.39 -0.01 0.89 16 35 H 0.10 0.67 7.58 -2.39 -0.02 0.65 16 36 H 0.07 1.29 3.35 -2.39 -0.01 1.28 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 0.97 5.99 -2.38 -0.01 0.95 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 2.09 1.15 -2.39 0.00 2.09 16 42 H 0.08 2.50 5.47 -2.38 -0.01 2.49 16 43 H 0.02 1.02 8.10 -2.39 -0.02 1.00 16 44 H 0.37 21.15 7.80 -92.72 -0.72 20.43 16 45 H 0.25 15.52 8.31 -92.71 -0.77 14.74 16 46 H 0.11 3.12 6.07 -2.38 -0.01 3.11 16 47 H 0.04 1.71 8.05 -2.38 -0.02 1.69 16 48 H 0.14 0.08 7.89 -2.39 -0.02 0.06 16 49 H 0.12 0.65 4.93 -2.39 -0.01 0.64 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 52 H 0.42 6.74 8.96 -92.71 -0.83 5.91 16 Total: -1.00 -94.17 362.00 0.97 -93.20 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.56 Total: 30.24 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.23 Total: 9.11 kcal Atomic # 7 Polarization: -129.96 SS G_CDS: -5.63 Total: -135.59 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.09 Total: -48.92 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.03 Total: 51.95 kcal Total: -94.17 0.97 -93.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088328811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.244 kcal (2) G-P(sol) polarization free energy of solvation -94.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds