Wall clock time and date at job start Tue Mar 31 2020 19:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30023 * 127.33194 * 2 1 4 4 O 1.20661 * 112.29856 * 180.30500 * 3 2 1 5 5 C 1.33495 * 113.15472 * 359.71314 * 4 3 2 6 6 C 1.50707 * 126.82289 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47503 * 299.97826 * 6 5 4 8 8 C 1.53001 * 109.47084 * 59.98402 * 6 5 4 9 9 C 1.37360 * 106.34467 * 0.02562 * 5 4 3 10 10 C 1.47391 * 128.56317 * 179.97438 * 9 5 4 11 11 O 1.21614 * 119.99894 * 90.00114 * 10 9 5 12 12 N 1.34783 * 120.00427 * 269.99946 * 10 9 5 13 13 C 1.46498 * 120.00018 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47136 * 325.00038 * 13 12 10 15 15 C 1.53006 * 109.46726 * 205.00037 * 13 12 10 16 16 N 1.46504 * 109.46883 * 55.00397 * 15 13 12 17 17 C 1.36936 * 119.99477 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00404 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99891 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47326 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47231 * 119.99688 * 21 19 17 24 24 H 1.48502 * 109.47486 * 239.99534 * 21 19 17 25 25 C 1.52996 * 109.47308 * 85.00189 * 13 12 10 26 26 C 1.52992 * 109.47473 * 179.97438 * 25 13 12 27 27 C 1.52996 * 109.46951 * 299.99975 * 25 13 12 28 28 C 1.53000 * 109.46955 * 59.99558 * 25 13 12 29 29 H 1.09005 * 109.47340 * 270.13765 * 1 2 3 30 30 H 1.09001 * 109.47862 * 30.14111 * 1 2 3 31 31 H 1.09004 * 109.47011 * 150.14579 * 1 2 3 32 32 H 1.09003 * 109.46616 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.47015 * 60.00219 * 7 6 5 34 34 H 1.08997 * 109.47366 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47423 * 300.00577 * 7 6 5 36 36 H 1.08998 * 109.47028 * 299.99620 * 8 6 5 37 37 H 1.08996 * 109.47161 * 59.99149 * 8 6 5 38 38 H 1.08992 * 109.47281 * 179.97438 * 8 6 5 39 39 H 0.96995 * 119.99419 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.47002 * 174.99895 * 15 13 12 41 41 H 1.08993 * 109.46955 * 295.00332 * 15 13 12 42 42 H 0.96992 * 119.99966 * 359.97438 * 16 15 13 43 43 H 0.96993 * 120.00031 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.47004 * 60.00224 * 26 25 13 45 45 H 1.08998 * 109.47374 * 179.97438 * 26 25 13 46 46 H 1.09002 * 109.47721 * 300.00336 * 26 25 13 47 47 H 1.08996 * 109.47312 * 60.00123 * 27 25 13 48 48 H 1.09007 * 109.46984 * 179.97438 * 27 25 13 49 49 H 1.08993 * 109.47243 * 299.99585 * 27 25 13 50 50 H 1.09002 * 109.47044 * 60.00129 * 28 25 13 51 51 H 1.09004 * 109.47376 * 179.97438 * 28 25 13 52 52 H 1.08996 * 109.47552 * 300.00026 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0339 0.0000 4 8 3.4607 0.7209 -0.0059 5 6 3.6493 -0.6007 -0.0049 6 6 4.9712 -1.3244 -0.0105 7 6 5.7584 -0.9391 -1.2645 8 6 5.7714 -0.9345 1.2339 9 6 2.3991 -1.1696 0.0024 10 6 2.0401 -2.5991 0.0059 11 8 1.8976 -3.1876 1.0606 12 7 1.8698 -3.2541 -1.1597 13 6 1.5125 -4.6748 -1.1561 14 1 1.9997 -5.1699 -0.3161 15 6 1.9727 -5.3197 -2.4651 16 7 3.4057 -5.0783 -2.6509 17 6 4.0434 -5.5642 -3.7610 18 1 3.4902 -6.1259 -4.4992 19 6 5.4011 -5.3350 -3.9375 20 7 6.0753 -4.6502 -3.0381 21 14 6.2713 -5.9986 -5.4513 22 1 5.2972 -6.7280 -6.3024 23 1 6.8536 -4.8705 -6.2219 24 1 7.3549 -6.9242 -5.0337 25 6 -0.0048 -4.8188 -1.0225 26 6 -0.3781 -6.3025 -1.0194 27 6 -0.4650 -4.1738 0.2863 28 6 -0.6888 -4.1238 -2.2015 29 1 -0.3634 0.0025 1.0277 30 1 -0.3635 0.8887 -0.5160 31 1 -0.3633 -0.8913 -0.5116 32 1 4.7963 -2.4003 -0.0075 33 1 5.9333 0.1368 -1.2674 34 1 6.7142 -1.4629 -1.2688 35 1 5.1883 -1.2169 -2.1510 36 1 5.9463 0.1414 1.2310 37 1 5.2106 -1.2089 2.1273 38 1 6.7273 -1.4582 1.2301 39 1 1.9839 -2.7848 -2.0008 40 1 1.7872 -6.3931 -2.4261 41 1 1.4200 -4.8854 -3.2980 42 1 3.9024 -4.5736 -1.9882 43 1 7.0238 -4.4897 -3.1616 44 1 0.1091 -6.7979 -0.1796 45 1 -1.4591 -6.4050 -0.9238 46 1 -0.0503 -6.7617 -1.9520 47 1 -0.1992 -3.1168 0.2837 48 1 -1.5461 -4.2760 0.3813 49 1 0.0222 -4.6689 1.1263 50 1 -0.3609 -4.5832 -3.1340 51 1 -1.7698 -4.2267 -2.1067 52 1 -0.4230 -3.0667 -2.2042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284598021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:25 Heat of formation + Delta-G solvation = 11.057591 kcal Electronic energy + Delta-G solvation = -31939.888909 eV Core-core repulsion = 27942.436284 eV Total energy + Delta-G solvation = -3997.452625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.76163 -40.03123 -37.44200 -35.85643 -34.50819 -34.44963 -33.18891 -31.16754 -30.66760 -28.82229 -27.82886 -27.16364 -27.00211 -26.79692 -24.61411 -23.48513 -22.76218 -21.52642 -20.58065 -19.27602 -18.62344 -17.79425 -17.57108 -16.96504 -16.17551 -15.85459 -15.67810 -14.97679 -14.71270 -14.18409 -13.94533 -13.87949 -13.51773 -13.47974 -13.37121 -13.19368 -13.14184 -13.05051 -12.89537 -12.71824 -12.24485 -12.03617 -11.97234 -11.83776 -11.46228 -11.40612 -11.28215 -11.21293 -11.10999 -11.08514 -10.87025 -10.76958 -10.69845 -10.52859 -10.25198 -10.01084 -9.91156 -9.79278 -9.76572 -9.24744 -8.94213 -8.65627 -6.98695 -5.82739 -3.11425 1.45306 1.97871 2.65117 2.94012 3.38557 3.45328 3.46699 3.54050 4.15442 4.28440 4.52194 4.83315 4.90133 4.96246 5.01972 5.09024 5.17261 5.22145 5.29462 5.35790 5.47238 5.49852 5.53524 5.56463 5.67252 5.74914 5.76290 5.78620 5.86202 5.88110 5.92028 5.97049 6.01024 6.04747 6.05942 6.09417 6.13207 6.22387 6.27976 6.33632 6.42547 6.42695 6.46127 6.57077 6.60255 6.69201 6.90197 7.64938 7.77436 8.30096 8.35172 8.43122 9.47694 10.02544 10.38533 11.39337 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.005347 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.913060 B = 5234.866091 C = 7739.119954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.050 3.950 3 N -0.362 5.362 4 O 0.095 5.905 5 C 0.040 3.960 6 C -0.016 4.016 7 C -0.141 4.141 8 C -0.147 4.147 9 C -0.252 4.252 10 C 0.601 3.399 11 O -0.529 6.529 12 N -0.695 5.695 13 C 0.148 3.852 14 H 0.088 0.912 15 C 0.141 3.859 16 N -0.730 5.730 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.927 5.927 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.076 4.076 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.142 4.142 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.405 0.595 40 H 0.037 0.963 41 H 0.029 0.971 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.042 0.958 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.050 0.950 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.071 6.987 6.078 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 N -0.069 5.069 4 O 0.034 5.966 5 C -0.024 4.024 6 C -0.035 4.035 7 C -0.198 4.198 8 C -0.204 4.204 9 C -0.260 4.260 10 C 0.385 3.615 11 O -0.405 6.405 12 N -0.345 5.345 13 C 0.044 3.956 14 H 0.106 0.894 15 C 0.014 3.986 16 N -0.375 5.375 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.206 4.206 20 N -0.575 5.575 21 Si 0.735 3.265 22 H -0.207 1.207 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.078 4.078 26 C -0.198 4.198 27 C -0.189 4.189 28 C -0.199 4.199 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.240 0.760 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.069 0.931 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.319 7.781 6.666 14.542 hybrid contribution 0.678 -0.747 -1.055 1.460 sum -9.641 7.034 5.611 13.187 Atomic orbital electron populations 1.20191 0.85495 1.03894 1.03651 1.24662 0.98316 0.86813 1.01404 1.73587 0.89295 1.23519 1.20521 1.84484 1.21233 1.22901 1.67973 1.24853 0.97280 0.83219 0.97027 1.19972 0.86536 0.99132 0.97863 1.21788 1.01033 1.00967 0.96038 1.21860 1.00338 1.02010 0.96185 1.21968 0.92646 0.95482 1.15854 1.16749 0.76670 0.83720 0.84319 1.90802 1.50685 1.67822 1.31235 1.45919 1.69049 1.11387 1.08118 1.21348 0.93386 0.80287 1.00597 0.89380 1.21103 0.87361 0.97461 0.92715 1.42332 1.02996 1.66125 1.26043 1.19224 0.91625 1.27790 0.98534 0.91238 1.24692 0.96527 1.00927 0.98412 1.69655 1.07999 1.44719 1.35150 0.86172 0.79639 0.78108 0.82548 1.20675 1.21941 1.21920 1.20900 0.94805 0.96087 0.96004 1.21882 1.00809 0.94678 1.02447 1.21913 0.99422 1.00856 0.96667 1.21920 0.99579 1.00334 0.98078 0.89862 0.90133 0.89933 0.87227 0.92730 0.90508 0.91320 0.92039 0.92307 0.90840 0.75993 0.94587 0.95340 0.78124 0.93627 0.92536 0.92859 0.91859 0.92973 0.93862 0.91943 0.91849 0.93118 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.49 36.00 0.38 -0.42 16 2 C 0.05 0.72 7.59 -79.77 -0.61 0.11 16 3 N -0.36 -5.50 12.01 34.78 0.42 -5.08 16 4 O 0.09 1.42 11.06 18.64 0.21 1.63 16 5 C 0.04 0.60 6.06 -34.62 -0.21 0.39 16 6 C -0.02 -0.22 3.33 -91.77 -0.31 -0.53 16 7 C -0.14 -2.03 9.18 37.15 0.34 -1.69 16 8 C -0.15 -1.78 9.18 37.16 0.34 -1.44 16 9 C -0.25 -3.91 6.24 -102.90 -0.64 -4.55 16 10 C 0.60 9.82 5.65 -12.53 -0.07 9.75 16 11 O -0.53 -9.88 14.23 5.27 0.07 -9.81 16 12 N -0.70 -10.75 3.64 -54.89 -0.20 -10.95 16 13 C 0.15 2.34 1.69 -67.93 -0.11 2.23 16 14 H 0.09 1.60 7.58 -51.93 -0.39 1.20 16 15 C 0.14 2.57 5.10 -4.04 -0.02 2.55 16 16 N -0.73 -16.88 5.43 -59.90 -0.33 -17.21 16 17 C -0.24 -6.28 9.99 -15.06 -0.15 -6.43 16 18 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -25.74 13.06 55.49 0.72 -25.02 16 21 Si 0.90 21.44 29.55 -169.99 -5.02 16.41 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C -0.08 -0.99 0.62 -154.52 -0.10 -1.09 16 26 C -0.14 -1.69 8.12 37.15 0.30 -1.39 16 27 C -0.13 -1.74 7.00 37.16 0.26 -1.48 16 28 C -0.14 -1.67 7.97 37.16 0.30 -1.37 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 32 H 0.11 1.82 7.70 -51.93 -0.40 1.42 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.41 6.26 8.59 -40.82 -0.35 5.91 16 40 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 41 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 42 H 0.38 9.44 7.33 -40.82 -0.30 9.14 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 47 H 0.05 0.73 5.66 -51.93 -0.29 0.44 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 50 H 0.06 0.77 6.32 -51.93 -0.33 0.45 16 51 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.05 0.61 7.60 -51.93 -0.39 0.22 16 LS Contribution 413.60 15.07 6.23 6.23 Total: -1.00 -29.18 413.60 -7.18 -36.36 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.90 Total: 13.13 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.39 Total: -5.70 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.62 Total: -58.26 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.28 Total: -8.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.18 -7.18 -36.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284598021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.422 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds