Wall clock time and date at job start Tue Mar 31 2020 19:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99765 * 2 1 4 4 C 1.52999 * 109.47138 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47129 * 240.00153 * 3 2 1 6 6 C 1.50704 * 109.46939 * 119.99955 * 3 2 1 7 7 O 1.21280 * 119.99766 * 0.02562 * 6 3 2 8 8 N 1.34771 * 120.00147 * 180.02562 * 6 3 2 9 9 C 1.46496 * 120.00267 * 180.02562 * 8 6 3 10 10 H 1.09000 * 110.64423 * 31.84926 * 9 8 6 11 11 C 1.54934 * 110.87732 * 268.58964 * 9 8 6 12 12 N 1.48526 * 103.22841 * 204.15543 * 11 9 8 13 13 C 1.46904 * 111.00300 * 159.71741 * 12 11 9 14 14 C 1.50706 * 109.46676 * 52.60368 * 13 12 11 15 15 O 1.21288 * 120.00284 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99730 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99910 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99959 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00053 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99930 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00155 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00503 * 21 19 17 25 25 C 1.47900 * 105.82003 * 39.20633 * 12 11 9 26 26 C 1.53988 * 107.05861 * 334.67110 * 25 12 11 27 27 C 1.53000 * 110.31321 * 120.14467 * 26 25 12 28 28 C 1.53002 * 110.30879 * 242.20969 * 26 25 12 29 29 H 1.07999 * 119.99769 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00108 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00176 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47073 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47224 * 299.99900 * 4 3 2 34 34 H 1.09001 * 109.47569 * 59.99733 * 4 3 2 35 35 H 1.09004 * 109.47006 * 299.99643 * 5 3 2 36 36 H 1.08994 * 109.47051 * 60.00008 * 5 3 2 37 37 H 1.09003 * 109.46981 * 180.02562 * 5 3 2 38 38 H 0.97005 * 119.99846 * 0.02562 * 8 6 3 39 39 H 1.08998 * 110.67108 * 85.72113 * 11 9 8 40 40 H 1.09007 * 110.66654 * 322.58879 * 11 9 8 41 41 H 1.08996 * 109.47230 * 292.60916 * 13 12 11 42 42 H 1.09002 * 109.47146 * 172.60148 * 13 12 11 43 43 H 0.96996 * 119.99887 * 0.02562 * 16 14 13 44 44 H 0.97001 * 119.99781 * 359.97438 * 20 19 17 45 45 H 1.09005 * 109.91663 * 94.02583 * 25 12 11 46 46 H 1.09003 * 109.91880 * 215.11599 * 25 12 11 47 47 H 1.08994 * 109.46859 * 61.44780 * 27 26 25 48 48 H 1.08994 * 109.47196 * 181.45316 * 27 26 25 49 49 H 1.09002 * 109.46742 * 301.45316 * 27 26 25 50 50 H 1.09004 * 109.47125 * 58.54275 * 28 26 25 51 51 H 1.08999 * 109.47399 * 178.54402 * 28 26 25 52 52 H 1.08997 * 109.47234 * 298.54810 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3863 -1.2493 6 6 2.9299 1.3850 1.2305 7 8 2.9353 0.4718 2.0286 8 7 3.6986 2.4712 1.4441 9 6 4.5413 2.5485 2.6400 10 1 4.8831 1.5562 2.9341 11 6 3.7851 3.2355 3.8047 12 7 4.8810 3.7638 4.6567 13 6 4.3950 4.8371 5.5342 14 6 3.1873 4.3550 6.2960 15 8 2.7726 3.2281 6.1251 16 7 2.5688 5.1758 7.1678 17 6 1.4698 4.7374 7.8604 18 1 1.1001 3.7342 7.7077 19 6 0.8318 5.5837 8.7590 20 7 1.2814 6.8045 8.9444 21 14 -0.6651 4.9861 9.7032 22 1 -1.1561 6.0708 10.5907 23 1 -1.7352 4.6066 8.7460 24 1 -0.2938 3.8056 10.5241 25 6 5.9105 4.2684 3.7225 26 6 5.7422 3.4928 2.4029 27 6 5.4405 4.4576 1.2544 28 6 7.0044 2.6837 2.0977 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.6142 3.4121 0.0011 33 1 0.4422 2.4105 -0.8891 34 1 0.4428 2.4101 0.8908 35 1 3.6515 0.5578 -1.2492 36 1 2.3164 1.3285 -2.1392 37 1 3.4884 2.3301 -1.2490 38 1 3.6940 3.2017 0.8060 39 1 3.1855 2.5104 4.3550 40 1 3.1615 4.0483 3.4322 41 1 4.1224 5.7036 4.9317 42 1 5.1804 5.1157 6.2368 43 1 2.9007 6.0768 7.3047 44 1 2.0589 7.1147 8.4544 45 1 5.7633 5.3343 3.5481 46 1 6.9042 4.0938 4.1352 47 1 6.2743 5.1488 1.1321 48 1 5.2985 3.8928 0.3331 49 1 4.5336 5.0187 1.4800 50 1 7.2007 1.9934 2.9182 51 1 6.8609 2.1205 1.1756 52 1 7.8508 3.3606 1.9821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675467521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:51 Heat of formation + Delta-G solvation = -43.600664 kcal Electronic energy + Delta-G solvation = -30878.038323 eV Core-core repulsion = 26878.215538 eV Total energy + Delta-G solvation = -3999.822785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74838 -39.43586 -38.06694 -36.35785 -34.91162 -34.12746 -33.25765 -31.18294 -31.01837 -28.94929 -27.71352 -27.64652 -27.25095 -24.95911 -24.35935 -23.47397 -21.69908 -20.59158 -19.74617 -19.32171 -18.57276 -17.88993 -17.17816 -16.51936 -16.19120 -15.62480 -15.28033 -15.16128 -14.75658 -14.50342 -14.47433 -14.12316 -13.91945 -13.78654 -13.54149 -13.46901 -13.11094 -12.92116 -12.68785 -12.60933 -12.48145 -12.32565 -12.08610 -11.97590 -11.78000 -11.71355 -11.45919 -11.29734 -11.20273 -11.06150 -10.95852 -10.93185 -10.78249 -10.55530 -10.19108 -9.84362 -9.82842 -9.52151 -9.44028 -8.98173 -8.41442 -8.06596 -7.94736 -6.74570 -3.87471 2.10097 2.66150 3.15768 3.32121 3.36269 3.56451 3.84325 4.07131 4.31633 4.33727 4.36796 4.53663 4.54910 4.67113 4.70602 4.85200 4.93273 5.15178 5.17652 5.20572 5.21618 5.24857 5.30711 5.39796 5.41766 5.44901 5.45722 5.51857 5.55846 5.62996 5.66387 5.72169 5.80419 5.82113 5.85692 5.91490 5.92996 5.94576 6.01766 6.13514 6.18793 6.45561 6.46969 6.60305 6.71073 7.14462 7.22165 7.47693 7.81855 8.09768 8.24825 8.60562 8.81663 9.48144 9.89065 10.68865 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.003263 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.498448 B = 8578.994085 C =10538.065494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.056 4.056 4 C -0.145 4.145 5 C -0.135 4.135 6 C 0.523 3.477 7 O -0.526 6.526 8 N -0.721 5.721 9 C 0.146 3.854 10 H 0.104 0.896 11 C 0.033 3.967 12 N -0.492 5.492 13 C 0.038 3.962 14 C 0.443 3.557 15 O -0.569 6.569 16 N -0.574 5.574 17 C -0.381 4.381 18 H 0.099 0.901 19 C -0.009 4.009 20 N -0.902 5.902 21 Si 1.091 2.909 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.042 3.958 26 C -0.083 4.083 27 C -0.146 4.146 28 C -0.134 4.134 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.397 0.603 39 H 0.122 0.878 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.375 0.625 44 H 0.261 0.739 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.054 0.946 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 -3.709 -22.540 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.143 4.143 3 C -0.059 4.059 4 C -0.202 4.202 5 C -0.192 4.192 6 C 0.309 3.691 7 O -0.400 6.400 8 N -0.375 5.375 9 C 0.041 3.959 10 H 0.122 0.878 11 C -0.095 4.095 12 N -0.216 5.216 13 C -0.094 4.094 14 C 0.229 3.771 15 O -0.453 6.453 16 N -0.212 5.212 17 C -0.510 4.510 18 H 0.117 0.883 19 C -0.211 4.211 20 N -0.541 5.541 21 Si 0.916 3.084 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.086 4.086 26 C -0.084 4.084 27 C -0.204 4.204 28 C -0.191 4.191 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.235 0.765 39 H 0.140 0.860 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.208 0.792 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.073 0.927 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.331 -5.085 -20.568 22.113 hybrid contribution 1.123 1.290 -1.771 2.462 sum 7.454 -3.795 -22.339 23.854 Atomic orbital electron populations 1.23975 0.95892 1.02306 1.00699 1.22463 0.95629 0.96496 0.99720 1.19906 0.95727 0.96114 0.94141 1.21965 0.98877 0.96106 1.03301 1.21801 0.99226 1.02348 0.95865 1.20420 0.79719 0.82071 0.86936 1.90739 1.64861 1.37907 1.46528 1.46133 1.45175 1.20889 1.25293 1.22050 0.89124 1.00382 0.84366 0.87814 1.23818 0.93455 0.99825 0.92413 1.64559 1.10101 1.29854 1.17087 1.22110 0.97716 0.92681 0.96906 1.19652 0.86241 0.86923 0.84306 1.90480 1.67565 1.19658 1.67588 1.41914 1.27803 1.13863 1.37660 1.20540 1.06034 1.02538 1.21891 0.88304 1.26500 1.03651 0.93958 0.97036 1.70906 1.24629 1.16826 1.41728 0.83143 0.73837 0.75424 0.75950 1.20411 1.21028 1.20944 1.23089 0.97745 0.96936 0.90879 1.21635 0.95802 0.95610 0.95337 1.21917 1.02119 0.98830 0.97525 1.21837 0.95800 0.99662 1.01824 0.88207 0.87879 0.86867 0.92059 0.90999 0.91317 0.91839 0.91217 0.92085 0.76546 0.86001 0.94619 0.93509 0.89141 0.79199 0.92808 0.93618 0.90015 0.91684 0.92179 0.92378 0.91771 0.92685 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 13.70 29.01 0.40 -1.52 16 2 C -0.12 -1.37 8.00 -36.02 -0.29 -1.66 16 3 C -0.06 -0.56 0.84 -156.81 -0.13 -0.70 16 4 C -0.15 -1.29 7.02 37.16 0.26 -1.03 16 5 C -0.13 -0.98 8.35 37.16 0.31 -0.67 16 6 C 0.52 7.19 6.47 -10.99 -0.07 7.12 16 7 O -0.53 -9.71 15.68 5.56 0.09 -9.62 16 8 N -0.72 -8.53 4.72 -52.01 -0.25 -8.78 16 9 C 0.15 2.04 2.84 -66.07 -0.19 1.85 16 10 H 0.10 1.69 7.27 -51.93 -0.38 1.32 16 11 C 0.03 0.59 4.99 -1.90 -0.01 0.58 16 12 N -0.49 -8.41 5.26 -231.89 -1.22 -9.63 16 13 C 0.04 0.69 5.52 -4.97 -0.03 0.66 16 14 C 0.44 10.67 7.49 -10.98 -0.08 10.59 16 15 O -0.57 -15.75 13.10 5.55 0.07 -15.67 16 16 N -0.57 -14.67 5.28 -10.96 -0.06 -14.73 16 17 C -0.38 -10.87 9.68 -14.93 -0.14 -11.01 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 19 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 20 N -0.90 -25.49 13.68 55.50 0.76 -24.73 16 21 Si 1.09 24.69 29.92 -169.99 -5.09 19.60 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.04 0.53 6.02 -2.76 -0.02 0.51 16 26 C -0.08 -0.89 0.95 -153.15 -0.14 -1.03 16 27 C -0.15 -1.20 7.02 37.16 0.26 -0.94 16 28 C -0.13 -1.25 8.23 37.16 0.31 -0.94 16 29 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.10 0.94 5.69 -52.49 -0.30 0.64 16 31 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 33 H 0.07 0.51 7.50 -51.93 -0.39 0.12 16 34 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 38 H 0.40 3.60 4.77 -40.82 -0.19 3.41 16 39 H 0.12 2.80 5.97 -51.93 -0.31 2.49 16 40 H 0.04 0.64 8.02 -51.93 -0.42 0.23 16 41 H 0.05 0.77 7.81 -51.93 -0.41 0.36 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.38 8.83 6.73 -40.82 -0.27 8.56 16 44 H 0.26 7.07 6.78 -40.82 -0.28 6.80 16 45 H 0.05 0.53 7.11 -51.93 -0.37 0.16 16 46 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.41 6.98 -51.93 -0.36 0.05 16 49 H 0.06 0.51 7.97 -51.93 -0.41 0.10 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -34.95 404.74 -7.89 -42.85 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -8.64 Total: 13.15 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 0.34 Total: 1.47 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.76 Total: -57.86 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.16 Total: -25.30 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.09 Total: 19.60 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.95 -7.89 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675467521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.753 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds