Wall clock time and date at job start Tue Mar 31 2020 20:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00243 * 2 1 3 5 5 C 1.52999 * 109.47269 * 119.99846 * 2 1 3 6 6 C 1.50706 * 109.46573 * 60.00269 * 5 2 1 7 7 O 1.21274 * 120.00042 * 359.72068 * 6 5 2 8 8 N 1.34777 * 119.99766 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00266 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47317 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.46510 * 119.99611 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.55770 * 32.10134 * 13 12 10 15 15 C 1.54851 * 110.62447 * 269.02049 * 13 12 10 16 16 C 1.55840 * 103.44723 * 241.51111 * 15 13 12 17 17 H 1.09000 * 115.56172 * 159.57215 * 16 15 13 18 18 C 1.55849 * 105.06544 * 288.17924 * 16 15 13 19 19 C 1.54854 * 103.44462 * 71.82211 * 18 16 15 20 20 C 1.55846 * 103.44818 * 0.02562 * 19 18 16 21 21 H 1.09000 * 115.56183 * 159.56132 * 20 19 18 22 22 N 1.50236 * 101.04779 * 32.93610 * 20 19 18 23 23 C 1.36930 * 130.83980 * 126.00093 * 22 20 19 24 24 H 1.08001 * 119.99731 * 359.97438 * 23 22 20 25 25 C 1.38819 * 120.00416 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99815 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00141 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47007 * 60.00216 * 27 25 23 29 29 H 1.48495 * 109.47109 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47049 * 300.00175 * 27 25 23 31 31 H 1.09000 * 109.47140 * 299.99606 * 1 2 3 32 32 H 1.09001 * 109.47375 * 59.99624 * 1 2 3 33 33 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47377 * 300.00375 * 3 2 1 36 36 H 1.09000 * 109.46866 * 60.00225 * 3 2 1 37 37 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 38 38 H 1.09001 * 109.46832 * 59.99801 * 4 2 1 39 39 H 1.08992 * 109.47303 * 179.97438 * 4 2 1 40 40 H 1.09000 * 109.47486 * 300.00335 * 5 2 1 41 41 H 1.09001 * 109.47362 * 179.97438 * 5 2 1 42 42 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 43 43 H 1.09004 * 109.47212 * 300.00463 * 9 8 6 44 44 H 1.09000 * 109.46684 * 60.00307 * 9 8 6 45 45 H 0.96996 * 120.00269 * 359.97438 * 12 10 9 46 46 H 1.08997 * 110.62963 * 0.02562 * 15 13 12 47 47 H 1.08998 * 110.61929 * 123.02319 * 15 13 12 48 48 H 1.09006 * 110.62331 * 313.33760 * 18 16 15 49 49 H 1.08992 * 110.76600 * 190.37906 * 18 16 15 50 50 H 1.09006 * 110.62759 * 241.51109 * 19 18 16 51 51 H 1.08999 * 110.75995 * 118.55642 * 19 18 16 52 52 H 0.97001 * 120.00026 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -2.1421 1.2491 7 8 0.8363 -2.5372 0.3421 8 7 1.8637 -2.9721 2.2597 9 6 1.3750 -4.3532 2.2600 10 6 1.8774 -5.0636 3.4903 11 8 2.5747 -4.4742 4.2887 12 7 1.5518 -6.3540 3.7035 13 6 2.0408 -7.0449 4.8994 14 1 2.1335 -6.3484 5.7327 15 6 3.3939 -7.7409 4.6123 16 6 3.0839 -9.2491 4.8531 17 1 3.7743 -9.9515 4.3861 18 6 2.9251 -9.3885 6.3972 19 6 1.5719 -8.6924 6.6842 20 6 1.0971 -8.2278 5.2744 21 1 0.0300 -8.0265 5.1802 22 7 1.6504 -9.3239 4.4086 23 6 1.0371 -10.1399 3.4959 24 1 -0.0222 -10.0417 3.3098 25 6 1.7770 -11.0932 2.8097 26 7 3.0678 -11.2131 3.0367 27 14 0.9402 -12.2068 1.5651 28 1 0.3347 -11.3805 0.4900 29 1 1.9420 -13.1306 0.9752 30 1 -0.1215 -12.9949 2.2411 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9565 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6766 -0.2073 -2.1392 39 1 3.1299 -0.7208 -1.2495 40 1 1.6767 -0.2074 2.1393 41 1 3.1300 -0.7216 1.2490 42 1 2.4213 -2.6549 2.9872 43 1 0.2849 -4.3529 2.2606 44 1 1.7376 -4.8670 1.3697 45 1 0.9939 -6.8252 3.0652 46 1 3.7015 -7.5717 3.5804 47 1 4.1599 -7.3911 5.3043 48 1 3.7371 -8.8773 6.9144 49 1 2.8864 -10.4380 6.6885 50 1 1.7128 -7.8361 7.3438 51 1 0.8598 -9.3954 7.1164 52 1 3.5849 -11.8790 2.5570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111424708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:53 Heat of formation + Delta-G solvation = -42.532512 kcal Electronic energy + Delta-G solvation = -29992.989436 eV Core-core repulsion = 25993.212970 eV Total energy + Delta-G solvation = -3999.776466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.47735 -39.77449 -38.52942 -36.75142 -34.49307 -33.90597 -32.58305 -29.96602 -29.16818 -28.87499 -28.03251 -27.39430 -27.32616 -26.29109 -24.23205 -21.70160 -20.78057 -20.12299 -19.86865 -19.20774 -18.70096 -17.59022 -17.07392 -16.44867 -16.11359 -15.98567 -15.41495 -15.01917 -14.83962 -14.57319 -14.44804 -14.38492 -13.98359 -13.76551 -13.31420 -12.95766 -12.88030 -12.80288 -12.30847 -12.27768 -12.10207 -11.94845 -11.87039 -11.43692 -11.30817 -11.28402 -11.18659 -10.98951 -10.95617 -10.91993 -10.84682 -10.59114 -10.41335 -10.15726 -10.00355 -9.87527 -9.64716 -9.31918 -9.22533 -9.20370 -9.01830 -8.58818 -7.00837 -5.79462 -3.18847 2.50293 2.74401 2.86216 3.34325 3.39122 3.40409 3.61507 4.36692 4.42251 4.57241 4.61169 4.85374 5.01557 5.05802 5.21417 5.27494 5.29350 5.31980 5.32558 5.37278 5.43668 5.57005 5.57883 5.63623 5.69269 5.73535 5.82062 5.89450 5.92674 5.98969 6.01532 6.04527 6.08175 6.14714 6.23098 6.32562 6.35488 6.41793 6.48455 6.53844 6.66904 6.76398 6.88448 7.01312 7.25052 7.39445 7.41835 7.73579 7.80881 8.09963 8.13182 8.39408 9.02061 9.65485 10.45845 11.29637 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.002432 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.098347 B =11512.166566 C =12740.760261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.154 4.154 5 C -0.132 4.132 6 C 0.515 3.485 7 O -0.533 6.533 8 N -0.718 5.718 9 C 0.098 3.902 10 C 0.505 3.495 11 O -0.553 6.553 12 N -0.698 5.698 13 C 0.128 3.872 14 H 0.081 0.919 15 C -0.143 4.143 16 C 0.156 3.844 17 H 0.152 0.848 18 C -0.139 4.139 19 C -0.128 4.128 20 C 0.126 3.874 21 H 0.088 0.912 22 N -0.590 5.590 23 C -0.218 4.218 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.919 5.919 27 Si 0.915 3.085 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.286 1.286 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.411 0.589 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.406 0.594 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.051 0.949 51 H 0.057 0.943 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 19.510 -0.862 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.211 4.211 5 C -0.172 4.172 6 C 0.302 3.698 7 O -0.411 6.411 8 N -0.373 5.373 9 C -0.029 4.029 10 C 0.290 3.710 11 O -0.433 6.433 12 N -0.347 5.347 13 C 0.021 3.979 14 H 0.099 0.901 15 C -0.184 4.184 16 C 0.049 3.951 17 H 0.168 0.832 18 C -0.179 4.179 19 C -0.168 4.168 20 C 0.017 3.983 21 H 0.106 0.894 22 N -0.310 5.310 23 C -0.346 4.346 24 H 0.096 0.904 25 C -0.205 4.205 26 N -0.567 5.567 27 Si 0.746 3.254 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.213 1.213 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.249 0.751 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.241 0.759 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.580 19.345 -1.167 19.444 hybrid contribution -0.357 -0.670 -0.478 0.897 sum -1.936 18.675 -1.645 18.847 Atomic orbital electron populations 1.22116 0.94069 1.04189 1.00739 1.20270 0.96425 0.94443 0.94032 1.21902 1.00887 0.95323 1.01846 1.22114 1.00018 1.02925 0.96088 1.21781 1.02554 0.92247 1.00580 1.20691 0.80180 0.87710 0.81232 1.90589 1.37660 1.77329 1.35519 1.45801 1.54103 1.11119 1.26235 1.21077 1.00845 0.83364 0.97639 1.20408 0.80729 0.82769 0.87097 1.90649 1.38982 1.66468 1.47179 1.45954 1.52118 1.10633 1.25980 1.22716 0.96029 0.93265 0.85851 0.90097 1.23459 0.94903 0.99379 1.00619 1.23700 0.88275 0.93138 0.89949 0.83158 1.23071 0.95350 0.99388 1.00053 1.22889 0.98179 0.99013 0.96750 1.23162 0.95412 0.88452 0.91290 0.89363 1.46510 1.04380 1.36500 1.43641 1.18952 0.92569 1.10246 1.12801 0.90402 1.24709 0.95751 0.99556 1.00436 1.69473 1.05439 1.37056 1.44691 0.86142 0.78068 0.80284 0.80909 1.21188 1.21610 1.21270 0.93585 0.93134 0.89676 0.92671 0.92401 0.92704 0.89701 0.93117 0.93523 0.88840 0.88816 0.75149 0.88580 0.88390 0.75858 0.92193 0.92765 0.93332 0.92594 0.93022 0.92402 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.18 37.16 0.30 -1.15 16 2 C -0.05 -0.44 0.77 -154.51 -0.12 -0.56 16 3 C -0.14 -0.98 8.47 37.16 0.31 -0.66 16 4 C -0.15 -1.50 8.18 37.16 0.30 -1.20 16 5 C -0.13 -1.10 4.77 -27.88 -0.13 -1.23 16 6 C 0.51 5.81 7.24 -10.98 -0.08 5.73 16 7 O -0.53 -7.41 11.35 5.56 0.06 -7.35 16 8 N -0.72 -8.16 5.53 -61.47 -0.34 -8.50 16 9 C 0.10 1.21 6.15 -5.20 -0.03 1.18 16 10 C 0.50 7.52 7.90 -10.99 -0.09 7.44 16 11 O -0.55 -9.56 15.31 5.56 0.09 -9.48 16 12 N -0.70 -11.01 5.07 -51.36 -0.26 -11.27 16 13 C 0.13 2.24 2.81 -65.40 -0.18 2.05 16 14 H 0.08 1.42 7.23 -51.93 -0.38 1.04 16 15 C -0.14 -2.79 6.23 -24.24 -0.15 -2.94 16 16 C 0.16 3.43 4.69 -62.78 -0.29 3.13 16 17 H 0.15 3.83 5.58 -51.93 -0.29 3.54 16 18 C -0.14 -2.66 6.44 -24.23 -0.16 -2.82 16 19 C -0.13 -2.24 6.44 -24.23 -0.16 -2.39 16 20 C 0.13 2.33 5.06 -62.77 -0.32 2.01 16 21 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 22 N -0.59 -13.45 2.99 -145.75 -0.44 -13.89 16 23 C -0.22 -5.53 10.59 -15.06 -0.16 -5.69 16 24 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 26 N -0.92 -25.26 10.48 55.49 0.58 -24.68 16 27 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 28 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.00 5.50 -51.93 -0.29 0.72 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 1.03 5.52 -51.93 -0.29 0.74 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.41 4.45 7.44 -40.82 -0.30 4.15 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.41 6.25 8.66 -40.82 -0.35 5.90 16 46 H 0.06 1.27 7.98 -51.93 -0.41 0.85 16 47 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 48 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 51 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 52 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 402.48 15.07 6.07 6.07 Total: -1.00 -29.32 402.48 -9.30 -38.61 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -8.99 Total: 11.84 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.04 Total: 2.58 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.45 Total: -58.33 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.15 Total: -16.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.32 -9.30 -38.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111424708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.919 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds