Wall clock time and date at job start Tue Mar 31 2020 20:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00243 * 2 1 3 5 5 C 1.52999 * 109.47269 * 119.99846 * 2 1 3 6 6 C 1.50706 * 109.46573 * 60.00269 * 5 2 1 7 7 O 1.21274 * 120.00042 * 359.72068 * 6 5 2 8 8 N 1.34777 * 119.99766 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00266 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47317 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.46510 * 119.99611 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.55770 * 32.10134 * 13 12 10 15 15 C 1.54851 * 110.62447 * 269.02049 * 13 12 10 16 16 C 1.55840 * 103.44723 * 241.51111 * 15 13 12 17 17 H 1.09000 * 115.56172 * 159.57215 * 16 15 13 18 18 C 1.55849 * 105.06544 * 288.17924 * 16 15 13 19 19 C 1.54854 * 103.44462 * 71.82211 * 18 16 15 20 20 C 1.55846 * 103.44818 * 0.02562 * 19 18 16 21 21 H 1.09000 * 115.56183 * 159.56132 * 20 19 18 22 22 N 1.50236 * 101.04779 * 32.93610 * 20 19 18 23 23 C 1.36930 * 130.83980 * 126.00093 * 22 20 19 24 24 H 1.08001 * 119.99731 * 359.97438 * 23 22 20 25 25 C 1.38819 * 120.00416 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99815 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00141 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47007 * 60.00216 * 27 25 23 29 29 H 1.48495 * 109.47109 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47049 * 300.00175 * 27 25 23 31 31 H 1.09000 * 109.47140 * 299.99606 * 1 2 3 32 32 H 1.09001 * 109.47375 * 59.99624 * 1 2 3 33 33 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47377 * 300.00375 * 3 2 1 36 36 H 1.09000 * 109.46866 * 60.00225 * 3 2 1 37 37 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 38 38 H 1.09001 * 109.46832 * 59.99801 * 4 2 1 39 39 H 1.08992 * 109.47303 * 179.97438 * 4 2 1 40 40 H 1.09000 * 109.47486 * 300.00335 * 5 2 1 41 41 H 1.09001 * 109.47362 * 179.97438 * 5 2 1 42 42 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 43 43 H 1.09004 * 109.47212 * 300.00463 * 9 8 6 44 44 H 1.09000 * 109.46684 * 60.00307 * 9 8 6 45 45 H 0.96996 * 120.00269 * 359.97438 * 12 10 9 46 46 H 1.08997 * 110.62963 * 0.02562 * 15 13 12 47 47 H 1.08998 * 110.61929 * 123.02319 * 15 13 12 48 48 H 1.09006 * 110.62331 * 313.33760 * 18 16 15 49 49 H 1.08992 * 110.76600 * 190.37906 * 18 16 15 50 50 H 1.09006 * 110.62759 * 241.51109 * 19 18 16 51 51 H 1.08999 * 110.75995 * 118.55642 * 19 18 16 52 52 H 0.97001 * 120.00026 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -2.1421 1.2491 7 8 0.8363 -2.5372 0.3421 8 7 1.8637 -2.9721 2.2597 9 6 1.3750 -4.3532 2.2600 10 6 1.8774 -5.0636 3.4903 11 8 2.5747 -4.4742 4.2887 12 7 1.5518 -6.3540 3.7035 13 6 2.0408 -7.0449 4.8994 14 1 2.1335 -6.3484 5.7327 15 6 3.3939 -7.7409 4.6123 16 6 3.0839 -9.2491 4.8531 17 1 3.7743 -9.9515 4.3861 18 6 2.9251 -9.3885 6.3972 19 6 1.5719 -8.6924 6.6842 20 6 1.0971 -8.2278 5.2744 21 1 0.0300 -8.0265 5.1802 22 7 1.6504 -9.3239 4.4086 23 6 1.0371 -10.1399 3.4959 24 1 -0.0222 -10.0417 3.3098 25 6 1.7770 -11.0932 2.8097 26 7 3.0678 -11.2131 3.0367 27 14 0.9402 -12.2068 1.5651 28 1 0.3347 -11.3805 0.4900 29 1 1.9420 -13.1306 0.9752 30 1 -0.1215 -12.9949 2.2411 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9565 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6766 -0.2073 -2.1392 39 1 3.1299 -0.7208 -1.2495 40 1 1.6767 -0.2074 2.1393 41 1 3.1300 -0.7216 1.2490 42 1 2.4213 -2.6549 2.9872 43 1 0.2849 -4.3529 2.2606 44 1 1.7376 -4.8670 1.3697 45 1 0.9939 -6.8252 3.0652 46 1 3.7015 -7.5717 3.5804 47 1 4.1599 -7.3911 5.3043 48 1 3.7371 -8.8773 6.9144 49 1 2.8864 -10.4380 6.6885 50 1 1.7128 -7.8361 7.3438 51 1 0.8598 -9.3954 7.1164 52 1 3.5849 -11.8790 2.5570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111424708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:52 Heat of formation + Delta-G solvation = -60.586203 kcal Electronic energy + Delta-G solvation = -29993.772303 eV Core-core repulsion = 25993.212970 eV Total energy + Delta-G solvation = -4000.559333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.54266 -41.00537 -39.88489 -37.52188 -35.53740 -35.24024 -34.41600 -31.03256 -30.96238 -30.25087 -29.32485 -28.07325 -27.99588 -27.36901 -26.05954 -23.05252 -21.70762 -21.53173 -21.37822 -20.35048 -19.89333 -18.85347 -18.56048 -17.61488 -17.20682 -16.96841 -16.79377 -16.49347 -16.01357 -15.73037 -15.54143 -15.22531 -15.18247 -15.13204 -14.63956 -14.18209 -14.00526 -13.69834 -13.65649 -13.60918 -12.95416 -12.91726 -12.89780 -12.83356 -12.78433 -12.66811 -12.63844 -12.19776 -12.10366 -12.01370 -11.98038 -11.88865 -11.70356 -11.61420 -11.50892 -11.28076 -10.95859 -10.92960 -10.71778 -10.50452 -10.17001 -9.95898 -8.86207 -7.75423 -5.14666 1.50148 1.50474 1.51675 1.56776 1.66628 1.85500 2.50296 2.53182 3.38044 3.45786 3.62516 3.74110 3.89899 3.96531 4.02141 4.09123 4.26731 4.28340 4.30918 4.41310 4.47342 4.50275 4.62042 4.64094 4.67663 4.69394 4.70422 4.84427 4.87890 4.89057 4.91565 5.01619 5.09550 5.11754 5.16355 5.18532 5.20091 5.20188 5.36043 5.39546 5.41092 5.52390 5.56185 5.58808 5.69477 5.71111 5.91393 6.27150 6.51303 6.55936 7.06869 7.14775 7.26410 7.73742 8.59285 9.31823 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.002432 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.098347 B =11512.166566 C =12740.760261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.052 4.052 3 C -0.138 4.138 4 C -0.153 4.153 5 C -0.128 4.128 6 C 0.511 3.489 7 O -0.562 6.562 8 N -0.716 5.716 9 C 0.106 3.894 10 C 0.511 3.489 11 O -0.573 6.573 12 N -0.700 5.700 13 C 0.141 3.859 14 H 0.092 0.908 15 C -0.133 4.133 16 C 0.141 3.859 17 H 0.112 0.888 18 C -0.133 4.133 19 C -0.120 4.120 20 C 0.126 3.874 21 H 0.104 0.896 22 N -0.610 5.610 23 C -0.214 4.214 24 H 0.085 0.915 25 C -0.067 4.067 26 N -0.947 5.947 27 Si 0.972 3.028 28 H -0.279 1.279 29 H -0.302 1.302 30 H -0.283 1.283 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.415 0.585 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.408 0.592 46 H 0.035 0.965 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.036 0.964 50 H 0.083 0.917 51 H 0.058 0.942 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 21.989 0.132 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.053 4.053 3 C -0.195 4.195 4 C -0.210 4.210 5 C -0.167 4.167 6 C 0.300 3.700 7 O -0.441 6.441 8 N -0.371 5.371 9 C -0.022 4.022 10 C 0.297 3.703 11 O -0.454 6.454 12 N -0.348 5.348 13 C 0.034 3.966 14 H 0.110 0.890 15 C -0.174 4.174 16 C 0.034 3.966 17 H 0.130 0.870 18 C -0.172 4.172 19 C -0.160 4.160 20 C 0.019 3.981 21 H 0.122 0.878 22 N -0.331 5.331 23 C -0.343 4.343 24 H 0.103 0.897 25 C -0.259 4.259 26 N -0.597 5.597 27 Si 0.802 3.198 28 H -0.205 1.205 29 H -0.229 1.229 30 H -0.209 1.209 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.253 0.747 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.244 0.756 46 H 0.054 0.946 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.055 0.945 50 H 0.102 0.898 51 H 0.076 0.924 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.349 21.862 -0.152 21.988 hybrid contribution -0.125 -1.404 -0.774 1.608 sum -2.474 20.458 -0.926 20.628 Atomic orbital electron populations 1.22069 0.94857 1.02619 1.01365 1.20300 0.95800 0.95618 0.93566 1.21854 1.01397 0.93750 1.02478 1.22075 1.00401 1.01490 0.97060 1.21852 1.03528 0.90072 1.01274 1.21273 0.79550 0.88710 0.80465 1.90599 1.38973 1.78044 1.36525 1.45831 1.54136 1.10636 1.26520 1.20976 1.01422 0.83786 0.95997 1.20707 0.79930 0.82256 0.87365 1.90637 1.39830 1.66826 1.48103 1.45915 1.52249 1.11004 1.25675 1.22490 0.94361 0.92974 0.86772 0.88967 1.23316 0.96589 0.97985 0.99485 1.23532 0.87572 0.93804 0.91689 0.87042 1.22969 0.97456 0.98887 0.97889 1.22845 0.96762 0.99913 0.96430 1.23380 0.96389 0.87288 0.91031 0.87847 1.46696 1.05133 1.37330 1.43966 1.19304 0.92951 1.09704 1.12324 0.89682 1.25401 0.96337 1.01489 1.02701 1.69731 1.06512 1.37658 1.45822 0.85240 0.76823 0.78595 0.79174 1.20546 1.22879 1.20915 0.92544 0.92935 0.92248 0.91830 0.92298 0.91607 0.92382 0.92870 0.92820 0.86742 0.87121 0.74658 0.87428 0.88625 0.75628 0.94627 0.91363 0.91023 0.94528 0.89847 0.92355 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.18 71.98 0.59 -2.11 16 2 C -0.05 -0.81 0.77 -52.18 -0.04 -0.85 16 3 C -0.14 -1.51 8.47 71.98 0.61 -0.90 16 4 C -0.15 -2.85 8.18 71.98 0.59 -2.26 16 5 C -0.13 -1.83 4.77 29.85 0.14 -1.69 16 6 C 0.51 10.91 7.24 87.66 0.63 11.55 16 7 O -0.56 -15.49 11.35 -3.01 -0.03 -15.53 16 8 N -0.72 -15.21 5.53 -466.79 -2.58 -17.79 16 9 C 0.11 2.47 6.15 85.63 0.53 3.00 16 10 C 0.51 14.43 7.90 87.66 0.69 15.12 16 11 O -0.57 -18.70 15.31 -3.04 -0.05 -18.74 16 12 N -0.70 -21.05 5.07 -434.80 -2.21 -23.25 16 13 C 0.14 4.65 2.81 46.63 0.13 4.78 16 14 H 0.09 2.92 7.23 -2.39 -0.02 2.91 16 15 C -0.13 -5.12 6.23 32.21 0.20 -4.92 16 16 C 0.14 6.23 4.69 46.22 0.22 6.44 16 17 H 0.11 5.92 5.58 -2.39 -0.01 5.91 16 18 C -0.13 -4.92 6.44 32.21 0.21 -4.72 16 19 C -0.12 -3.85 6.44 32.21 0.21 -3.65 16 20 C 0.13 4.42 5.06 46.25 0.23 4.65 16 21 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 22 N -0.61 -27.63 2.99 -615.05 -1.84 -29.47 16 23 C -0.21 -10.87 10.59 84.04 0.89 -9.98 16 24 H 0.09 4.09 7.83 -2.91 -0.02 4.07 16 25 C -0.07 -3.56 5.50 84.86 0.47 -3.10 16 26 N -0.95 -53.98 10.48 21.65 0.23 -53.75 16 27 Si 0.97 44.09 29.55 68.60 2.03 46.11 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 29 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 30 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.39 5.50 -2.39 -0.01 1.38 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 1.42 5.52 -2.39 -0.01 1.40 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.42 8.21 7.44 -92.71 -0.69 7.52 16 43 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.41 12.11 8.66 -92.71 -0.80 11.31 16 46 H 0.03 1.51 7.98 -2.39 -0.02 1.49 16 47 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 48 H 0.07 2.30 7.82 -2.38 -0.02 2.28 16 49 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.08 2.19 7.82 -2.38 -0.02 2.17 16 51 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -64.39 402.48 1.28 -63.11 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.57 Total: 37.93 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 6.30 Total: 11.38 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -6.40 Total: -124.25 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.08 Total: -34.27 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.39 1.28 -63.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111424708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.521 kcal (2) G-P(sol) polarization free energy of solvation -64.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds