Wall clock time and date at job start Tue Mar 31 2020 20:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46772 * 2 1 4 4 C 1.53004 * 109.46729 * 186.51404 * 3 2 1 5 5 C 1.52992 * 109.47089 * 65.77686 * 4 3 2 6 6 C 1.50701 * 109.47172 * 66.52005 * 3 2 1 7 7 O 1.21282 * 119.99526 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00225 * 179.97438 * 6 3 2 9 9 C 1.46506 * 119.99817 * 179.97438 * 8 6 3 10 10 C 1.50700 * 109.46932 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99932 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00127 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00171 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.55763 * 32.09861 * 13 12 10 15 15 C 1.54853 * 110.62868 * 269.02598 * 13 12 10 16 16 C 1.55842 * 103.44510 * 241.51467 * 15 13 12 17 17 H 1.08996 * 115.56130 * 159.56919 * 16 15 13 18 18 C 1.55844 * 105.06072 * 288.17217 * 16 15 13 19 19 C 1.54849 * 103.44890 * 71.82326 * 18 16 15 20 20 C 1.55840 * 110.62719 * 154.99825 * 13 12 10 21 21 H 1.09009 * 115.56124 * 318.92734 * 20 13 12 22 22 N 1.50232 * 101.05339 * 32.93072 * 16 15 13 23 23 C 1.36942 * 130.83710 * 126.07045 * 22 16 15 24 24 H 1.08003 * 119.99998 * 179.97438 * 23 22 16 25 25 C 1.38814 * 120.00058 * 359.95351 * 23 22 16 26 26 N 1.31626 * 119.99762 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00347 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47034 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47132 * 120.00063 * 27 25 23 30 30 H 1.48499 * 109.47240 * 240.00487 * 27 25 23 31 31 H 1.08993 * 109.47118 * 294.83088 * 1 2 3 32 32 H 1.08997 * 109.47166 * 174.83544 * 1 2 3 33 33 H 1.08996 * 109.47008 * 54.83591 * 1 2 3 34 34 H 1.08993 * 109.47243 * 120.00564 * 2 1 3 35 35 H 1.09003 * 109.46390 * 240.00488 * 2 1 3 36 36 H 1.08997 * 109.47775 * 306.51922 * 3 2 1 37 37 H 1.09007 * 109.46922 * 185.77130 * 4 3 2 38 38 H 1.08993 * 109.47202 * 305.76853 * 4 3 2 39 39 H 1.08997 * 109.47638 * 174.83478 * 5 4 3 40 40 H 1.09000 * 109.46869 * 294.83261 * 5 4 3 41 41 H 1.09001 * 109.47660 * 54.83105 * 5 4 3 42 42 H 0.96991 * 119.99926 * 359.97438 * 8 6 3 43 43 H 1.09002 * 109.47173 * 299.99743 * 9 8 6 44 44 H 1.08997 * 109.46888 * 59.99927 * 9 8 6 45 45 H 0.97007 * 119.99529 * 359.97438 * 12 10 9 46 46 H 1.09006 * 110.62290 * 359.97438 * 15 13 12 47 47 H 1.08991 * 110.62690 * 123.01687 * 15 13 12 48 48 H 1.09008 * 110.62954 * 313.33603 * 18 16 15 49 49 H 1.08997 * 110.76727 * 190.38393 * 18 16 15 50 50 H 1.08998 * 110.63550 * 241.51177 * 19 18 16 51 51 H 1.09001 * 110.76264 * 118.55540 * 19 18 16 52 52 H 0.97000 * 119.99806 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5612 1.4456 -0.1637 5 6 3.9263 0.9049 -1.5475 6 6 1.6736 2.1048 1.3032 7 8 1.0643 1.4842 2.1484 8 7 2.0232 3.3866 1.5293 9 6 1.6665 4.0306 2.7960 10 6 2.1689 5.4514 2.7961 11 8 2.7664 5.8834 1.8331 12 7 1.9550 6.2417 3.8667 13 6 2.4439 7.6227 3.8670 14 1 2.4277 8.0347 2.8580 15 6 3.8694 7.6967 4.4673 16 6 3.6899 8.6131 5.7151 17 1 4.4663 8.5295 6.4755 18 6 3.4650 10.0432 5.1382 19 6 2.0396 9.9693 4.5378 20 6 1.5973 8.5045 4.8337 21 1 0.5223 8.3248 4.8145 22 7 2.2951 8.2513 6.1399 23 6 1.8091 7.8233 7.3465 24 1 0.7564 7.6100 7.4597 25 6 2.6694 7.6633 8.4240 26 7 3.9523 7.9235 8.2861 27 14 2.0065 7.0802 10.0702 28 1 0.5419 6.8591 9.9637 29 1 2.6723 5.8083 10.4495 30 1 2.2781 8.1092 11.1058 31 1 -0.3633 0.4315 0.9326 32 1 -0.3633 -1.0235 -0.0925 33 1 -0.3633 0.5918 -0.8401 34 1 1.8934 -0.5139 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.5845 1.9889 -0.8258 37 1 3.9356 2.4642 -0.0612 38 1 4.0104 0.8146 0.6032 39 1 5.0021 0.9923 -1.6996 40 1 3.6335 -0.1427 -1.6171 41 1 3.4035 1.4799 -2.3119 42 1 2.5108 3.8828 0.8534 43 1 0.5827 4.0288 2.9120 44 1 2.1213 3.4839 3.6221 45 1 1.4774 5.8960 4.6370 46 1 4.2124 6.7059 4.7653 47 1 4.5624 8.1469 3.7567 48 1 4.1977 10.2638 4.3618 49 1 3.5098 10.7908 5.9301 50 1 2.0652 10.1531 3.4637 51 1 1.3750 10.6782 5.0316 52 1 4.5535 7.8120 9.0391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111526277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:56 Heat of formation + Delta-G solvation = -50.131872 kcal Electronic energy + Delta-G solvation = -30046.535636 eV Core-core repulsion = 26046.429637 eV Total energy + Delta-G solvation = -4000.105999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.43451 -39.72236 -38.47928 -36.06587 -34.62513 -33.90838 -32.58270 -31.84548 -29.53480 -29.16351 -28.66003 -27.71665 -26.24556 -24.24122 -22.99044 -22.18739 -21.38934 -20.23804 -19.94493 -19.78303 -18.74380 -17.83277 -17.07745 -16.50355 -16.22948 -15.83811 -15.43836 -15.04646 -14.87831 -14.61145 -14.56514 -14.07024 -13.91843 -13.77294 -13.49919 -13.18148 -12.87855 -12.76411 -12.52617 -12.32159 -12.10667 -12.06904 -11.88008 -11.71655 -11.32526 -11.18104 -11.12349 -11.06315 -10.97562 -10.95058 -10.76428 -10.59009 -10.41353 -10.11762 -9.99735 -9.87583 -9.79115 -9.32126 -9.23128 -9.21969 -9.02539 -8.58692 -7.00548 -5.79803 -3.19112 2.50899 2.74680 2.86295 3.33709 3.39296 3.41860 3.61469 4.36424 4.38202 4.50456 4.56831 4.85038 4.97845 5.05339 5.06284 5.10179 5.22355 5.28607 5.31524 5.34663 5.40936 5.49943 5.56397 5.58057 5.63702 5.67091 5.80067 5.82088 5.84956 5.95312 5.99036 6.01582 6.06613 6.08350 6.14767 6.22956 6.31138 6.35813 6.42372 6.53894 6.66980 6.76501 6.88505 7.01457 7.25191 7.39980 7.42646 7.73583 7.80940 8.09971 8.12164 8.39566 9.02088 9.65373 10.45601 11.29387 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.002527 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.017756 B =11076.876724 C =12106.787534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C -0.106 4.106 4 C -0.119 4.119 5 C -0.152 4.152 6 C 0.518 3.482 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.098 3.902 10 C 0.505 3.495 11 O -0.553 6.553 12 N -0.698 5.698 13 C 0.128 3.872 14 H 0.081 0.919 15 C -0.143 4.143 16 C 0.156 3.844 17 H 0.152 0.848 18 C -0.139 4.139 19 C -0.128 4.128 20 C 0.125 3.875 21 H 0.088 0.912 22 N -0.590 5.590 23 C -0.217 4.217 24 H 0.079 0.921 25 C -0.009 4.009 26 N -0.919 5.919 27 Si 0.915 3.085 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.411 0.589 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.406 0.594 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.051 0.949 51 H 0.057 0.943 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 -9.275 -17.343 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.127 4.127 4 C -0.157 4.157 5 C -0.209 4.209 6 C 0.304 3.696 7 O -0.415 6.415 8 N -0.371 5.371 9 C -0.030 4.030 10 C 0.290 3.710 11 O -0.433 6.433 12 N -0.347 5.347 13 C 0.022 3.978 14 H 0.099 0.901 15 C -0.184 4.184 16 C 0.049 3.951 17 H 0.168 0.832 18 C -0.179 4.179 19 C -0.168 4.168 20 C 0.016 3.984 21 H 0.106 0.894 22 N -0.310 5.310 23 C -0.344 4.344 24 H 0.097 0.903 25 C -0.205 4.205 26 N -0.566 5.566 27 Si 0.745 3.255 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.249 0.751 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.241 0.759 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.465 -9.470 -17.054 19.662 hybrid contribution -0.312 -0.067 0.953 1.005 sum -2.777 -9.537 -16.101 18.919 Atomic orbital electron populations 1.21888 0.95473 1.01476 1.02768 1.21391 0.96533 0.93831 1.02425 1.21469 0.97720 0.98112 0.95435 1.21546 0.93118 1.02390 0.98637 1.21811 1.01557 1.01316 0.96198 1.20679 0.78668 0.81061 0.89191 1.90679 1.40390 1.63667 1.46762 1.45766 1.59249 1.13080 1.19031 1.21085 1.02042 0.91416 0.88420 1.20401 0.79903 0.87359 0.83312 1.90648 1.42624 1.75194 1.34790 1.45951 1.57109 1.13580 1.18037 1.22698 0.95830 0.80204 0.99102 0.90099 1.23462 0.94511 1.01474 0.98915 1.23689 0.90147 0.88447 0.92768 0.83162 1.23072 0.95069 1.00970 0.98761 1.22883 0.97964 0.97483 0.98476 1.23158 0.95197 0.92923 0.87074 0.89357 1.46519 1.03313 1.76022 1.05180 1.19051 0.93063 1.36833 0.85484 0.90291 1.24711 0.95507 1.02198 0.98087 1.69499 1.02290 1.54647 1.30182 0.85998 0.77826 0.77961 0.83666 1.20561 1.21785 1.21804 0.90889 0.92978 0.93406 0.91124 0.91276 0.88449 0.91185 0.91210 0.92343 0.92297 0.92450 0.75122 0.88590 0.88387 0.75859 0.92192 0.92763 0.93333 0.92596 0.93026 0.92400 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.61 37.16 0.36 -1.10 16 2 C -0.10 -0.90 4.95 -26.73 -0.13 -1.03 16 3 C -0.11 -0.93 2.17 -91.77 -0.20 -1.13 16 4 C -0.12 -0.92 5.34 -26.73 -0.14 -1.06 16 5 C -0.15 -0.93 9.56 37.15 0.36 -0.58 16 6 C 0.52 6.18 6.90 -10.99 -0.08 6.10 16 7 O -0.54 -8.08 14.06 5.56 0.08 -8.01 16 8 N -0.72 -8.44 5.38 -61.47 -0.33 -8.77 16 9 C 0.10 1.23 6.15 -5.19 -0.03 1.20 16 10 C 0.51 7.60 7.90 -10.99 -0.09 7.51 16 11 O -0.55 -9.60 15.31 5.55 0.09 -9.51 16 12 N -0.70 -11.07 5.07 -51.40 -0.26 -11.33 16 13 C 0.13 2.25 2.80 -65.44 -0.18 2.06 16 14 H 0.08 1.42 7.23 -51.93 -0.38 1.05 16 15 C -0.14 -2.80 6.23 -24.24 -0.15 -2.95 16 16 C 0.16 3.43 4.69 -62.81 -0.29 3.14 16 17 H 0.15 3.83 5.57 -51.93 -0.29 3.54 16 18 C -0.14 -2.67 6.44 -24.24 -0.16 -2.82 16 19 C -0.13 -2.23 6.44 -24.24 -0.16 -2.39 16 20 C 0.13 2.33 5.06 -62.80 -0.32 2.01 16 21 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 22 N -0.59 -13.45 2.99 -145.82 -0.44 -13.89 16 23 C -0.22 -5.50 10.59 -15.06 -0.16 -5.66 16 24 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 26 N -0.92 -25.27 10.48 55.49 0.58 -24.69 16 27 Si 0.91 21.13 29.55 -169.99 -5.02 16.10 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 H 0.07 0.85 6.19 -51.93 -0.32 0.53 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 35 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.55 7.41 -51.93 -0.38 0.17 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.33 6.70 -51.93 -0.35 -0.02 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.41 4.62 6.79 -40.82 -0.28 4.34 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.41 6.29 8.66 -40.82 -0.35 5.93 16 46 H 0.06 1.27 7.98 -51.93 -0.41 0.86 16 47 H 0.05 0.99 7.81 -51.93 -0.41 0.58 16 48 H 0.05 0.83 7.82 -51.92 -0.41 0.42 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 51 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 52 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 404.51 15.07 6.10 6.10 Total: -1.00 -29.76 404.51 -9.60 -39.36 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -8.92 Total: 11.67 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.47 Total: 2.96 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.45 Total: -58.67 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.16 Total: -17.52 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.76 -9.60 -39.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111526277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.769 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds