Wall clock time and date at job start Tue Mar 31 2020 20:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46772 * 2 1 4 4 C 1.53004 * 109.46729 * 186.51404 * 3 2 1 5 5 C 1.52992 * 109.47089 * 65.77686 * 4 3 2 6 6 C 1.50701 * 109.47172 * 66.52005 * 3 2 1 7 7 O 1.21282 * 119.99526 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00225 * 179.97438 * 6 3 2 9 9 C 1.46506 * 119.99817 * 179.97438 * 8 6 3 10 10 C 1.50700 * 109.46932 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99932 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00127 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00171 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.55763 * 32.09861 * 13 12 10 15 15 C 1.54853 * 110.62868 * 269.02598 * 13 12 10 16 16 C 1.55842 * 103.44510 * 241.51467 * 15 13 12 17 17 H 1.08996 * 115.56130 * 159.56919 * 16 15 13 18 18 C 1.55844 * 105.06072 * 288.17217 * 16 15 13 19 19 C 1.54849 * 103.44890 * 71.82326 * 18 16 15 20 20 C 1.55840 * 110.62719 * 154.99825 * 13 12 10 21 21 H 1.09009 * 115.56124 * 318.92734 * 20 13 12 22 22 N 1.50232 * 101.05339 * 32.93072 * 16 15 13 23 23 C 1.36942 * 130.83710 * 126.07045 * 22 16 15 24 24 H 1.08003 * 119.99998 * 179.97438 * 23 22 16 25 25 C 1.38814 * 120.00058 * 359.95351 * 23 22 16 26 26 N 1.31626 * 119.99762 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00347 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47034 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47132 * 120.00063 * 27 25 23 30 30 H 1.48499 * 109.47240 * 240.00487 * 27 25 23 31 31 H 1.08993 * 109.47118 * 294.83088 * 1 2 3 32 32 H 1.08997 * 109.47166 * 174.83544 * 1 2 3 33 33 H 1.08996 * 109.47008 * 54.83591 * 1 2 3 34 34 H 1.08993 * 109.47243 * 120.00564 * 2 1 3 35 35 H 1.09003 * 109.46390 * 240.00488 * 2 1 3 36 36 H 1.08997 * 109.47775 * 306.51922 * 3 2 1 37 37 H 1.09007 * 109.46922 * 185.77130 * 4 3 2 38 38 H 1.08993 * 109.47202 * 305.76853 * 4 3 2 39 39 H 1.08997 * 109.47638 * 174.83478 * 5 4 3 40 40 H 1.09000 * 109.46869 * 294.83261 * 5 4 3 41 41 H 1.09001 * 109.47660 * 54.83105 * 5 4 3 42 42 H 0.96991 * 119.99926 * 359.97438 * 8 6 3 43 43 H 1.09002 * 109.47173 * 299.99743 * 9 8 6 44 44 H 1.08997 * 109.46888 * 59.99927 * 9 8 6 45 45 H 0.97007 * 119.99529 * 359.97438 * 12 10 9 46 46 H 1.09006 * 110.62290 * 359.97438 * 15 13 12 47 47 H 1.08991 * 110.62690 * 123.01687 * 15 13 12 48 48 H 1.09008 * 110.62954 * 313.33603 * 18 16 15 49 49 H 1.08997 * 110.76727 * 190.38393 * 18 16 15 50 50 H 1.08998 * 110.63550 * 241.51177 * 19 18 16 51 51 H 1.09001 * 110.76264 * 118.55540 * 19 18 16 52 52 H 0.97000 * 119.99806 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5612 1.4456 -0.1637 5 6 3.9263 0.9049 -1.5475 6 6 1.6736 2.1048 1.3032 7 8 1.0643 1.4842 2.1484 8 7 2.0232 3.3866 1.5293 9 6 1.6665 4.0306 2.7960 10 6 2.1689 5.4514 2.7961 11 8 2.7664 5.8834 1.8331 12 7 1.9550 6.2417 3.8667 13 6 2.4439 7.6227 3.8670 14 1 2.4277 8.0347 2.8580 15 6 3.8694 7.6967 4.4673 16 6 3.6899 8.6131 5.7151 17 1 4.4663 8.5295 6.4755 18 6 3.4650 10.0432 5.1382 19 6 2.0396 9.9693 4.5378 20 6 1.5973 8.5045 4.8337 21 1 0.5223 8.3248 4.8145 22 7 2.2951 8.2513 6.1399 23 6 1.8091 7.8233 7.3465 24 1 0.7564 7.6100 7.4597 25 6 2.6694 7.6633 8.4240 26 7 3.9523 7.9235 8.2861 27 14 2.0065 7.0802 10.0702 28 1 0.5419 6.8591 9.9637 29 1 2.6723 5.8083 10.4495 30 1 2.2781 8.1092 11.1058 31 1 -0.3633 0.4315 0.9326 32 1 -0.3633 -1.0235 -0.0925 33 1 -0.3633 0.5918 -0.8401 34 1 1.8934 -0.5139 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.5845 1.9889 -0.8258 37 1 3.9356 2.4642 -0.0612 38 1 4.0104 0.8146 0.6032 39 1 5.0021 0.9923 -1.6996 40 1 3.6335 -0.1427 -1.6171 41 1 3.4035 1.4799 -2.3119 42 1 2.5108 3.8828 0.8534 43 1 0.5827 4.0288 2.9120 44 1 2.1213 3.4839 3.6221 45 1 1.4774 5.8960 4.6370 46 1 4.2124 6.7059 4.7653 47 1 4.5624 8.1469 3.7567 48 1 4.1977 10.2638 4.3618 49 1 3.5098 10.7908 5.9301 50 1 2.0652 10.1531 3.4637 51 1 1.3750 10.6782 5.0316 52 1 4.5535 7.8120 9.0391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111526277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:55 Heat of formation + Delta-G solvation = -68.414734 kcal Electronic energy + Delta-G solvation = -30047.328441 eV Core-core repulsion = 26046.429637 eV Total energy + Delta-G solvation = -4000.898804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56049 -40.98047 -39.84992 -36.81789 -35.69328 -35.28592 -34.42023 -32.49497 -30.96621 -30.79793 -30.05256 -28.88077 -27.22023 -26.07262 -23.68551 -23.18407 -22.53643 -21.54294 -21.40150 -20.87585 -20.28036 -18.87625 -18.78621 -17.68438 -17.37064 -16.91088 -16.82226 -16.53685 -15.93854 -15.81690 -15.57417 -15.36753 -15.16250 -14.80499 -14.66551 -14.24266 -14.10465 -13.85453 -13.68973 -13.59583 -13.21755 -13.02370 -12.90869 -12.87324 -12.77521 -12.70630 -12.68096 -12.37554 -12.09392 -11.93502 -11.87145 -11.81749 -11.72665 -11.70949 -11.38777 -11.28759 -10.97904 -10.94422 -10.77197 -10.65733 -10.24258 -9.97533 -8.86364 -7.76099 -5.15263 1.48058 1.49246 1.50235 1.58236 1.60801 1.82179 2.48339 2.51090 3.37765 3.45462 3.58313 3.68235 3.84278 3.91712 4.01801 4.08747 4.27147 4.28311 4.30096 4.38115 4.41131 4.47101 4.50046 4.54120 4.60749 4.63797 4.69929 4.73925 4.84221 4.85397 4.91357 4.97599 5.09306 5.10649 5.17535 5.19091 5.20219 5.22817 5.24535 5.37407 5.39558 5.46656 5.52162 5.52553 5.58511 5.70479 5.91098 6.26845 6.46288 6.53963 7.06745 7.13230 7.18758 7.73249 8.58649 9.31462 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.002527 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.017756 B =11076.876724 C =12106.787534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.102 4.102 3 C -0.100 4.100 4 C -0.116 4.116 5 C -0.149 4.149 6 C 0.515 3.485 7 O -0.572 6.572 8 N -0.713 5.713 9 C 0.104 3.896 10 C 0.512 3.488 11 O -0.573 6.573 12 N -0.699 5.699 13 C 0.141 3.859 14 H 0.093 0.907 15 C -0.133 4.133 16 C 0.141 3.859 17 H 0.112 0.888 18 C -0.133 4.133 19 C -0.119 4.119 20 C 0.126 3.874 21 H 0.104 0.896 22 N -0.610 5.610 23 C -0.211 4.211 24 H 0.086 0.914 25 C -0.067 4.067 26 N -0.947 5.947 27 Si 0.971 3.029 28 H -0.266 1.266 29 H -0.299 1.299 30 H -0.300 1.300 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.415 0.585 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.409 0.591 46 H 0.035 0.965 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.036 0.964 50 H 0.083 0.917 51 H 0.058 0.942 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -9.506 -19.936 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.140 4.140 3 C -0.121 4.121 4 C -0.154 4.154 5 C -0.206 4.206 6 C 0.303 3.697 7 O -0.451 6.451 8 N -0.368 5.368 9 C -0.023 4.023 10 C 0.298 3.702 11 O -0.453 6.453 12 N -0.348 5.348 13 C 0.034 3.966 14 H 0.111 0.889 15 C -0.174 4.174 16 C 0.034 3.966 17 H 0.129 0.871 18 C -0.172 4.172 19 C -0.159 4.159 20 C 0.019 3.981 21 H 0.122 0.878 22 N -0.331 5.331 23 C -0.340 4.340 24 H 0.104 0.896 25 C -0.260 4.260 26 N -0.597 5.597 27 Si 0.801 3.199 28 H -0.191 1.191 29 H -0.227 1.227 30 H -0.228 1.228 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.254 0.746 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.244 0.756 46 H 0.053 0.947 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.055 0.945 50 H 0.102 0.898 51 H 0.077 0.923 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.644 -9.693 -19.689 22.246 hybrid contribution 0.053 0.011 1.711 1.711 sum -3.590 -9.683 -17.979 20.733 Atomic orbital electron populations 1.21861 0.95887 1.02003 1.01736 1.21402 0.96137 0.93776 1.02684 1.21519 0.98536 0.98013 0.94009 1.21531 0.92148 1.02210 0.99552 1.21798 1.01927 1.01752 0.95101 1.21302 0.77766 0.80730 0.89939 1.90671 1.41972 1.64336 1.48169 1.45790 1.59126 1.13186 1.18708 1.21006 1.02630 0.89747 0.88953 1.20662 0.79100 0.87894 0.82537 1.90638 1.43448 1.75769 1.35451 1.45908 1.57202 1.13217 1.18463 1.22479 0.94084 0.81015 0.98993 0.88943 1.23320 0.96292 0.99579 0.98186 1.23519 0.89192 0.90938 0.92922 0.87062 1.22970 0.97136 0.98308 0.98800 1.22839 0.96347 0.96429 1.00293 1.23379 0.95945 0.93823 0.84987 0.87825 1.46700 1.04350 1.76141 1.05898 1.19385 0.93284 1.34894 0.86476 0.89630 1.25394 0.95871 1.03753 1.00936 1.69749 1.03169 1.56608 1.30208 0.85103 0.77879 0.76614 0.80296 1.19052 1.22710 1.22790 0.93698 0.92160 0.92127 0.92955 0.88845 0.86492 0.91410 0.92220 0.92032 0.91635 0.91508 0.74618 0.87372 0.88603 0.75612 0.94652 0.91348 0.91023 0.94522 0.89846 0.92324 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.61 71.98 0.69 -2.01 16 2 C -0.10 -1.61 4.95 30.59 0.15 -1.46 16 3 C -0.10 -1.57 2.17 -11.54 -0.03 -1.59 16 4 C -0.12 -1.60 5.34 30.59 0.16 -1.44 16 5 C -0.15 -1.45 9.56 71.98 0.69 -0.76 16 6 C 0.51 11.82 6.90 87.66 0.61 12.43 16 7 O -0.57 -17.14 14.06 -3.04 -0.04 -17.18 16 8 N -0.71 -15.94 5.38 -466.77 -2.51 -18.46 16 9 C 0.10 2.51 6.15 85.63 0.53 3.04 16 10 C 0.51 14.61 7.90 87.66 0.69 15.30 16 11 O -0.57 -18.79 15.31 -3.05 -0.05 -18.83 16 12 N -0.70 -21.13 5.07 -434.92 -2.21 -23.34 16 13 C 0.14 4.66 2.80 46.61 0.13 4.79 16 14 H 0.09 2.93 7.23 -2.39 -0.02 2.91 16 15 C -0.13 -5.12 6.23 32.21 0.20 -4.92 16 16 C 0.14 6.24 4.69 46.23 0.22 6.45 16 17 H 0.11 5.92 5.57 -2.39 -0.01 5.90 16 18 C -0.13 -4.93 6.44 32.21 0.21 -4.72 16 19 C -0.12 -3.83 6.44 32.21 0.21 -3.63 16 20 C 0.13 4.40 5.06 46.23 0.23 4.64 16 21 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 22 N -0.61 -27.58 2.99 -615.26 -1.84 -29.41 16 23 C -0.21 -10.74 10.59 84.03 0.89 -9.85 16 24 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 25 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 26 N -0.95 -54.02 10.48 21.65 0.23 -53.79 16 27 Si 0.97 44.19 29.55 68.60 2.03 46.22 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 30 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 31 H 0.04 1.03 6.19 -2.39 -0.01 1.02 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 1.02 7.90 -2.39 -0.02 1.00 16 35 H 0.09 1.02 6.43 -2.39 -0.02 1.01 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 0.97 7.41 -2.38 -0.02 0.95 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.06 0.56 6.70 -2.39 -0.02 0.54 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.42 8.68 6.79 -92.71 -0.63 8.06 16 43 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.41 12.16 8.66 -92.70 -0.80 11.36 16 46 H 0.03 1.50 7.98 -2.38 -0.02 1.48 16 47 H 0.07 2.40 7.81 -2.39 -0.02 2.38 16 48 H 0.07 2.29 7.82 -2.38 -0.02 2.28 16 49 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 51 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.24 13.77 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -65.23 404.51 1.15 -64.08 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.51 Total: 37.55 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.05 Total: 13.16 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -6.33 Total: -125.00 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.09 Total: -36.01 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.23 1.15 -64.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111526277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.335 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds