Wall clock time and date at job start Tue Mar 31 2020 20:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46885 * 2 1 4 4 C 1.53002 * 109.46881 * 119.99534 * 2 1 3 5 5 C 1.52999 * 109.46805 * 175.00256 * 4 2 1 6 6 C 1.50703 * 109.46826 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00120 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99987 * 179.97438 * 6 5 4 9 9 C 1.47358 * 125.57198 * 0.03438 * 8 6 5 10 10 C 1.54829 * 104.79610 * 154.81102 * 9 8 6 11 11 C 1.54940 * 101.92802 * 37.07634 * 10 9 8 12 12 H 1.08993 * 112.82222 * 87.59416 * 11 10 9 13 13 C 1.53784 * 108.80993 * 214.23081 * 11 10 9 14 14 N 1.47862 * 107.12617 * 113.27139 * 13 11 10 15 15 C 1.46901 * 110.99735 * 212.91022 * 14 13 11 16 16 C 1.50702 * 109.46888 * 190.00004 * 15 14 13 17 17 O 1.21299 * 119.99848 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00111 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00082 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99946 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00089 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00411 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00192 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47145 * 89.99780 * 23 21 19 25 25 H 1.48495 * 109.47538 * 210.00357 * 23 21 19 26 26 H 1.48507 * 109.46938 * 330.00596 * 23 21 19 27 27 C 1.49874 * 106.45296 * 334.10241 * 14 13 11 28 28 C 1.46850 * 125.57751 * 179.97438 * 8 6 5 29 29 H 1.09003 * 112.02070 * 59.35409 * 28 8 6 30 30 H 1.08999 * 109.46921 * 300.00385 * 1 2 3 31 31 H 1.08999 * 109.46939 * 60.00157 * 1 2 3 32 32 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47216 * 239.99961 * 2 1 3 34 34 H 1.08999 * 109.46683 * 299.99612 * 3 2 1 35 35 H 1.08993 * 109.47225 * 59.99967 * 3 2 1 36 36 H 1.09004 * 109.46937 * 180.02562 * 3 2 1 37 37 H 1.08993 * 109.46982 * 55.00259 * 4 2 1 38 38 H 1.09000 * 109.47221 * 295.00028 * 4 2 1 39 39 H 1.08993 * 109.47348 * 60.00227 * 5 4 2 40 40 H 1.09000 * 109.47045 * 299.99880 * 5 4 2 41 41 H 1.09004 * 110.38148 * 35.97922 * 9 8 6 42 42 H 1.09006 * 110.37155 * 273.63823 * 9 8 6 43 43 H 1.09002 * 110.94760 * 155.24652 * 10 9 8 44 44 H 1.08997 * 110.94494 * 278.90898 * 10 9 8 45 45 H 1.09003 * 109.90631 * 232.64596 * 13 11 10 46 46 H 1.09000 * 109.90791 * 353.71593 * 13 11 10 47 47 H 1.09000 * 109.46964 * 309.99505 * 15 14 13 48 48 H 1.08994 * 109.47234 * 69.99887 * 15 14 13 49 49 H 0.96998 * 119.99562 * 359.97438 * 18 16 15 50 50 H 0.96998 * 120.00549 * 179.97438 * 22 21 19 51 51 H 1.09006 * 110.14419 * 279.72595 * 27 14 13 52 52 H 1.08994 * 111.62395 * 156.39903 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8309 1.1881 6 6 4.0671 -1.5407 2.4189 7 8 3.2828 -1.9217 3.2618 8 7 5.3880 -1.7530 2.5825 9 6 6.4450 -1.3446 1.6405 10 6 7.7184 -1.2069 2.5105 11 6 7.5481 -2.3747 3.5144 12 1 7.9588 -3.3139 3.1440 13 6 8.1306 -1.9498 4.8728 14 7 7.0002 -1.8569 5.8214 15 6 7.2304 -0.7972 6.8124 16 6 6.1902 -0.8910 7.8988 17 8 5.3404 -1.7553 7.8519 18 7 6.2041 -0.0145 8.9226 19 6 5.2582 -0.1002 9.9112 20 1 4.5016 -0.8697 9.8694 21 6 5.2722 0.8037 10.9664 22 7 4.3652 0.7220 11.9138 23 14 6.5804 2.1352 11.0384 24 1 6.0925 3.3472 10.3325 25 1 6.8684 2.4702 12.4561 26 1 7.8205 1.6466 10.3834 27 6 5.7786 -1.5758 4.9998 28 6 6.0093 -2.4280 3.7292 29 1 5.6456 -3.4486 3.8489 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 1.6054 -1.7197 1.2953 38 1 1.7516 -0.1582 2.1370 39 1 3.9994 0.1676 1.1422 40 1 3.8532 -1.3939 0.3004 41 1 6.1948 -0.3887 1.1803 42 1 6.5883 -2.1086 0.8764 43 1 8.6176 -1.3384 1.9087 44 1 7.7350 -0.2477 3.0278 45 1 8.8458 -2.6956 5.2196 46 1 8.6210 -0.9808 4.7796 47 1 8.2224 -0.9164 7.2480 48 1 7.1614 0.1760 6.3264 49 1 6.8839 0.6764 8.9603 50 1 4.3752 1.3527 12.6506 51 1 5.7316 -0.5164 4.7473 52 1 4.8691 -1.8895 5.5121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186794792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:14 Heat of formation + Delta-G solvation = -66.236183 kcal Electronic energy + Delta-G solvation = -30090.904608 eV Core-core repulsion = 26090.100273 eV Total energy + Delta-G solvation = -4000.804334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82503 -38.98165 -38.07392 -36.70991 -35.67162 -33.85591 -32.21949 -31.60540 -31.24198 -30.08173 -27.74391 -27.44664 -26.60718 -24.81667 -24.00610 -22.89393 -21.23242 -20.49974 -20.05538 -19.25472 -19.11671 -18.17983 -17.33824 -16.54854 -15.99219 -15.84155 -15.46034 -15.15587 -14.90734 -14.59729 -14.34320 -14.17895 -14.05970 -13.97413 -13.46140 -13.17320 -13.09453 -12.86219 -12.76760 -12.63051 -12.48175 -12.32012 -12.23802 -12.03905 -11.93807 -11.74669 -11.57169 -11.38024 -11.14934 -11.09256 -11.04442 -10.93041 -10.86283 -10.78014 -10.72216 -10.55655 -9.91837 -9.81951 -9.49624 -8.78345 -8.53744 -8.12117 -7.99150 -6.24868 -3.75912 2.60461 2.78807 3.05543 3.09592 3.17625 3.81232 3.92133 4.09575 4.14850 4.24660 4.45498 4.52255 4.54829 4.62246 4.80972 4.83106 4.84829 4.96048 4.99865 5.08412 5.13981 5.20208 5.25194 5.29242 5.33138 5.37618 5.39383 5.44469 5.53284 5.55061 5.57459 5.63258 5.67223 5.74094 5.74790 5.77609 5.80523 5.94467 5.95628 5.99942 6.04558 6.08714 6.19191 6.23902 6.53087 7.02494 7.13643 7.42394 7.64697 8.14686 8.21471 8.67168 9.02328 9.49030 9.91297 10.88583 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.002830 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.347710 B = 9893.061322 C =11592.709608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.102 4.102 5 C -0.135 4.135 6 C 0.522 3.478 7 O -0.524 6.524 8 N -0.619 5.619 9 C 0.101 3.899 10 C -0.130 4.130 11 C -0.105 4.105 12 H 0.102 0.898 13 C 0.044 3.956 14 N -0.496 5.496 15 C 0.037 3.963 16 C 0.454 3.546 17 O -0.554 6.554 18 N -0.594 5.594 19 C -0.301 4.301 20 H 0.120 0.880 21 C 0.040 3.960 22 N -0.884 5.884 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.046 3.954 28 C 0.136 3.864 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.048 0.952 49 H 0.369 0.631 50 H 0.272 0.728 51 H 0.039 0.961 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 0.660 -28.647 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.140 4.140 5 C -0.174 4.174 6 C 0.311 3.689 7 O -0.399 6.399 8 N -0.355 5.355 9 C -0.022 4.022 10 C -0.168 4.168 11 C -0.124 4.124 12 H 0.120 0.880 13 C -0.084 4.084 14 N -0.220 5.220 15 C -0.095 4.095 16 C 0.239 3.761 17 O -0.434 6.434 18 N -0.235 5.235 19 C -0.430 4.430 20 H 0.137 0.863 21 C -0.163 4.163 22 N -0.524 5.524 23 Si 0.706 3.294 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.082 4.082 28 C 0.033 3.967 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.201 0.799 50 H 0.083 0.917 51 H 0.057 0.943 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.523 -0.513 -27.724 28.273 hybrid contribution 1.300 2.027 -0.153 2.413 sum 6.823 1.514 -27.877 28.740 Atomic orbital electron populations 1.21829 0.95014 1.01886 1.01798 1.21137 0.96029 0.96280 0.98082 1.21922 1.00925 0.96085 1.01893 1.21443 0.92642 1.01745 0.98165 1.21722 0.98250 1.01387 0.96091 1.20495 0.80381 0.79656 0.88382 1.90784 1.54133 1.50594 1.44369 1.48589 1.05619 1.58883 1.22409 1.22320 0.87191 1.00187 0.92509 1.22951 0.97383 0.98815 0.97645 1.22989 0.94594 0.99087 0.95748 0.88014 1.22880 0.94470 1.00537 0.90552 1.64514 1.01772 1.43436 1.12304 1.22062 0.99938 0.93075 0.94397 1.19621 0.87888 0.84573 0.84017 1.90577 1.39261 1.36060 1.77514 1.42199 1.29272 1.29445 1.22553 1.19432 1.08138 1.16130 0.99314 0.86285 1.25023 0.97428 0.97994 0.95806 1.69622 1.34018 1.37235 1.11520 0.86679 0.81626 0.82551 0.78562 1.19753 1.20210 1.19533 1.23706 0.95493 0.96970 0.92002 1.22472 0.91469 0.97161 0.85631 0.88723 0.92454 0.92806 0.92600 0.91341 0.92828 0.92439 0.92664 0.91079 0.90886 0.89002 0.89240 0.90590 0.91184 0.89578 0.90522 0.90022 0.93470 0.89145 0.93364 0.79856 0.91698 0.94270 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.10 -0.72 2.92 -90.61 -0.26 -0.98 16 3 C -0.15 -1.04 8.95 37.16 0.33 -0.71 16 4 C -0.10 -0.99 3.97 -26.73 -0.11 -1.10 16 5 C -0.13 -1.19 4.44 -27.88 -0.12 -1.31 16 6 C 0.52 6.89 7.64 -10.98 -0.08 6.81 16 7 O -0.52 -9.52 15.95 5.56 0.09 -9.43 16 8 N -0.62 -7.11 2.97 -161.53 -0.48 -7.59 16 9 C 0.10 0.72 6.70 -2.61 -0.02 0.70 16 10 C -0.13 -0.91 6.35 -24.74 -0.16 -1.07 16 11 C -0.10 -1.00 4.01 -87.88 -0.35 -1.35 16 12 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 13 C 0.04 0.50 6.22 -2.89 -0.02 0.48 16 14 N -0.50 -8.24 4.89 -231.01 -1.13 -9.37 16 15 C 0.04 0.65 5.22 -4.97 -0.03 0.63 16 16 C 0.45 10.83 7.61 -10.98 -0.08 10.75 16 17 O -0.55 -15.66 14.64 5.54 0.08 -15.58 16 18 N -0.59 -14.73 5.09 -10.96 -0.06 -14.79 16 19 C -0.30 -8.82 10.16 -14.94 -0.15 -8.97 16 20 H 0.12 3.99 7.39 -52.49 -0.39 3.60 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.53 13.96 55.50 0.77 -25.75 16 23 Si 0.88 19.85 27.74 -169.99 -4.71 15.14 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 27 C 0.05 0.80 5.03 -1.25 -0.01 0.79 16 28 C 0.14 1.82 3.80 -65.52 -0.25 1.57 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.34 6.57 -51.93 -0.34 0.00 16 37 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.09 0.68 6.25 -51.93 -0.32 0.35 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.42 7.43 -51.93 -0.39 0.04 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.61 7.53 -51.93 -0.39 0.22 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.47 6.96 -51.93 -0.36 0.11 16 47 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 48 H 0.05 0.75 7.86 -51.93 -0.41 0.35 16 49 H 0.37 7.99 5.76 -40.82 -0.24 7.76 16 50 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 51 H 0.04 0.67 7.77 -51.93 -0.40 0.27 16 52 H 0.11 2.37 7.17 -51.93 -0.37 2.00 16 LS Contribution 404.67 15.07 6.10 6.10 Total: -1.00 -36.46 404.67 -9.51 -45.97 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -9.11 Total: 8.81 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -1.06 Total: 6.50 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.89 Total: -57.50 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: 0.17 Total: -25.02 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.71 Total: 15.14 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.46 -9.51 -45.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186794792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.265 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds