Wall clock time and date at job start Tue Mar 31 2020 19:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00323 * 2 1 4 4 C 1.53002 * 109.46569 * 353.81401 * 3 2 1 5 5 C 1.52995 * 109.47050 * 113.81397 * 3 2 1 6 6 C 1.53002 * 109.47249 * 304.28318 * 5 3 2 7 7 C 1.50698 * 109.46943 * 233.81693 * 3 2 1 8 8 O 1.21283 * 119.99793 * 239.97372 * 7 3 2 9 9 N 1.34772 * 120.00218 * 59.97405 * 7 3 2 10 10 C 1.47025 * 125.65047 * 184.36545 * 9 7 3 11 11 C 1.54318 * 107.27272 * 178.90518 * 10 9 7 12 12 C 1.55153 * 102.94391 * 337.80969 * 11 10 9 13 13 H 1.08991 * 111.00547 * 277.42641 * 12 11 10 14 14 C 1.52997 * 111.00562 * 153.57257 * 12 11 10 15 15 N 1.46904 * 109.46911 * 66.45433 * 14 12 11 16 16 C 1.46900 * 111.00201 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47490 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99665 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00221 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99931 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00240 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00094 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99903 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00440 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47116 * 59.99493 * 24 22 20 26 26 H 1.48496 * 109.47420 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46973 * 299.99942 * 24 22 20 28 28 C 1.47422 * 125.64883 * 4.06145 * 9 7 3 29 29 H 1.08003 * 120.00267 * 185.45327 * 1 2 3 30 30 H 1.07995 * 119.99661 * 5.44242 * 1 2 3 31 31 H 1.08005 * 119.99618 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46876 * 185.88795 * 4 3 2 33 33 H 1.08995 * 109.47638 * 305.88739 * 4 3 2 34 34 H 1.08997 * 109.47220 * 65.89111 * 4 3 2 35 35 H 1.09000 * 109.47492 * 64.28676 * 5 3 2 36 36 H 1.09002 * 109.47030 * 184.28791 * 5 3 2 37 37 H 1.09000 * 109.47204 * 177.41171 * 6 5 3 38 38 H 1.09000 * 109.47264 * 297.41235 * 6 5 3 39 39 H 1.09000 * 109.47191 * 57.41294 * 6 5 3 40 40 H 1.09000 * 109.88247 * 298.32544 * 10 9 7 41 41 H 1.09001 * 109.88127 * 59.32951 * 10 9 7 42 42 H 1.09003 * 110.71526 * 96.17264 * 11 10 9 43 43 H 1.09004 * 110.71936 * 219.26381 * 11 10 9 44 44 H 1.09001 * 109.47608 * 186.45033 * 14 12 11 45 45 H 1.08999 * 109.47654 * 306.45634 * 14 12 11 46 46 H 1.00899 * 111.00201 * 303.95076 * 15 14 12 47 47 H 1.09000 * 109.47286 * 300.00344 * 16 15 14 48 48 H 1.09006 * 109.47066 * 59.99806 * 16 15 14 49 49 H 0.97002 * 119.99808 * 0.02562 * 19 17 16 50 50 H 0.97000 * 120.00519 * 180.02562 * 23 22 20 51 51 H 1.08997 * 110.37056 * 323.00215 * 28 9 7 52 52 H 1.09009 * 110.36784 * 85.32484 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0766 2.4638 -0.1554 5 6 2.8230 1.4554 1.3196 6 6 1.8435 1.3327 2.4886 7 6 3.0412 1.3206 -1.1468 8 8 4.2284 1.4407 -0.9300 9 7 2.5962 1.2011 -2.4133 10 6 3.4408 1.1099 -3.6133 11 6 2.4988 0.9582 -4.8262 12 6 1.1974 0.4042 -4.1883 13 1 1.2591 -0.6751 -4.0495 14 6 -0.0265 0.7780 -5.0268 15 7 0.0385 0.0886 -6.3224 16 6 -1.1236 0.4240 -7.1561 17 6 -1.0226 -0.3005 -8.4737 18 8 -0.0753 -1.0245 -8.6965 19 7 -1.9847 -0.1438 -9.4044 20 6 -1.8929 -0.8034 -10.6029 21 1 -1.0499 -1.4487 -10.8010 22 6 -2.8845 -0.6415 -11.5626 23 7 -3.9105 0.1434 -11.3214 24 14 -2.7600 -1.5406 -13.1952 25 1 -2.7311 -3.0053 -12.9527 26 1 -3.9349 -1.2019 -14.0378 27 1 -1.5150 -1.1297 -13.8929 28 6 1.1821 1.1338 -2.8244 29 1 -0.5401 -0.9311 0.0889 30 1 -0.5399 0.9311 -0.0887 31 1 1.8500 -0.9354 -0.0004 32 1 1.6273 3.3986 -0.2605 33 1 0.4630 2.3021 -1.0417 34 1 0.4363 2.5163 0.7251 35 1 3.5787 0.6736 1.3952 36 1 3.3062 2.4320 1.3515 37 1 2.3908 1.3939 3.4292 38 1 1.1151 2.1421 2.4388 39 1 1.3267 0.3748 2.4306 40 1 4.0361 2.0170 -3.7174 41 1 4.0969 0.2425 -3.5398 42 1 2.3168 1.9246 -5.2963 43 1 2.9093 0.2513 -5.5473 44 1 -0.9328 0.4779 -4.5008 45 1 -0.0405 1.8557 -5.1890 46 1 0.9008 0.3002 -6.8018 47 1 -2.0373 0.1212 -6.6446 48 1 -1.1457 1.4993 -7.3331 49 1 -2.7420 0.4355 -9.2263 50 1 -4.6030 0.2562 -11.9912 51 1 0.6020 0.5664 -2.0967 52 1 0.7719 2.1374 -2.9383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690734412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:56 Heat of formation + Delta-G solvation = -54.238454 kcal Electronic energy + Delta-G solvation = -29407.865788 eV Core-core repulsion = 25407.581714 eV Total energy + Delta-G solvation = -4000.284074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99359 -38.67137 -38.08069 -37.11525 -35.38157 -33.87959 -32.41374 -31.81343 -31.20765 -30.16228 -29.04490 -27.33996 -26.41095 -24.87150 -23.55824 -23.15272 -22.00975 -20.67204 -20.17607 -19.24620 -18.56731 -17.90897 -17.32782 -16.98802 -16.15301 -15.92157 -15.57211 -15.36994 -14.97674 -14.72348 -14.51919 -14.25243 -14.05784 -13.75304 -13.67884 -13.53178 -13.41863 -13.16256 -12.97671 -12.57512 -12.52274 -12.35502 -12.25044 -12.06005 -11.89491 -11.60845 -11.57249 -11.53147 -11.27553 -11.17901 -11.04083 -10.93742 -10.88895 -10.82519 -10.45570 -10.23158 -10.21891 -9.51714 -9.48020 -8.87072 -8.49543 -8.10261 -7.97890 -6.43350 -3.84296 1.78300 2.38838 2.70514 3.19000 3.24846 3.29211 3.88489 3.94999 4.08792 4.20626 4.26009 4.38972 4.46450 4.49183 4.69073 4.78599 4.86200 4.98269 5.00375 5.05855 5.11102 5.12500 5.18697 5.23260 5.24394 5.27573 5.30611 5.45322 5.48189 5.52480 5.59486 5.61655 5.66013 5.70516 5.72300 5.76913 5.85594 5.90162 5.95108 5.96186 6.04311 6.12304 6.17443 6.24446 6.28299 7.15393 7.26210 7.53454 7.61111 7.90631 8.04348 8.59388 9.16087 9.52368 10.03783 10.74251 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.001789 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.144134 B =15645.732951 C =16190.780962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C -0.047 4.047 4 C -0.155 4.155 5 C -0.094 4.094 6 C -0.153 4.153 7 C 0.540 3.460 8 O -0.541 6.541 9 N -0.611 5.611 10 C 0.108 3.892 11 C -0.132 4.132 12 C -0.097 4.097 13 H 0.096 0.904 14 C 0.071 3.929 15 N -0.668 5.668 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.092 3.908 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.030 0.970 46 H 0.350 0.650 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.091 0.909 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 6.128 24.957 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.159 4.159 3 C -0.050 4.050 4 C -0.211 4.211 5 C -0.132 4.132 6 C -0.210 4.210 7 C 0.329 3.671 8 O -0.418 6.418 9 N -0.345 5.345 10 C -0.015 4.015 11 C -0.170 4.170 12 C -0.117 4.117 13 H 0.114 0.886 14 C -0.059 4.059 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.031 4.031 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.169 0.831 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.109 0.891 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.297 5.189 25.100 26.649 hybrid contribution -0.354 0.833 -1.137 1.453 sum 6.943 6.022 23.963 25.665 Atomic orbital electron populations 1.24073 0.95696 1.02837 0.99560 1.22636 0.95941 0.96763 1.00588 1.19909 0.95287 0.95454 0.94311 1.22168 0.98863 0.96789 1.03330 1.21296 0.97496 1.03246 0.91164 1.21870 0.99365 1.02202 0.97605 1.20156 0.88921 0.75733 0.82330 1.90699 1.17260 1.49843 1.84006 1.48423 1.08010 1.72406 1.05627 1.21951 0.93770 1.01963 0.83796 1.22758 0.95138 1.02313 0.96762 1.22339 0.94665 1.01394 0.93258 0.88575 1.21846 0.97395 0.95653 0.91050 1.60028 1.05370 1.60917 1.03735 1.21671 0.94864 0.97632 0.94021 1.19806 0.85300 0.86734 0.85635 1.90523 1.34065 1.42115 1.80069 1.41857 1.21467 1.42409 1.14248 1.19657 1.08071 1.24317 0.90950 0.87964 1.25261 0.95273 0.97380 0.99998 1.69601 1.10822 1.37686 1.36210 0.85912 0.77618 0.79683 0.80975 1.19879 1.20977 1.19919 1.22691 0.82696 1.00738 0.96939 0.87750 0.87501 0.86898 0.91952 0.91055 0.90676 0.91038 0.91124 0.92529 0.92500 0.92205 0.91508 0.91343 0.90634 0.89103 0.90659 0.95231 0.83084 0.89553 0.93887 0.77458 0.91813 0.89090 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.05 11.88 29.01 0.34 -0.70 16 2 C -0.14 -1.00 5.84 -36.03 -0.21 -1.21 16 3 C -0.05 -0.38 0.51 -156.81 -0.08 -0.46 16 4 C -0.15 -0.98 6.70 37.16 0.25 -0.73 16 5 C -0.09 -0.76 4.31 -26.73 -0.12 -0.87 16 6 C -0.15 -0.92 9.34 37.16 0.35 -0.57 16 7 C 0.54 6.09 6.56 -10.99 -0.07 6.02 16 8 O -0.54 -8.05 16.27 5.55 0.09 -7.96 16 9 N -0.61 -6.14 3.31 -170.66 -0.57 -6.70 16 10 C 0.11 1.08 6.87 -3.07 -0.02 1.06 16 11 C -0.13 -1.22 5.63 -24.90 -0.14 -1.36 16 12 C -0.10 -0.91 3.28 -88.59 -0.29 -1.20 16 13 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 14 C 0.07 0.74 5.19 -3.82 -0.02 0.72 16 15 N -0.67 -9.97 6.12 -115.05 -0.70 -10.67 16 16 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 17 C 0.44 10.16 7.82 -10.99 -0.09 10.07 16 18 O -0.58 -15.59 15.78 5.55 0.09 -15.50 16 19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.09 0.75 4.46 -2.65 -0.01 0.74 16 29 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 30 H 0.11 0.51 5.72 -52.49 -0.30 0.21 16 31 H 0.11 0.86 8.06 -52.48 -0.42 0.43 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.41 4.29 -51.93 -0.22 0.19 16 34 H 0.07 0.38 5.86 -51.93 -0.30 0.07 16 35 H 0.07 0.66 7.98 -51.93 -0.41 0.25 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.30 6.55 -51.93 -0.34 -0.04 16 39 H 0.06 0.35 6.91 -51.93 -0.36 0.00 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.67 8.01 -51.93 -0.42 0.26 16 43 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.29 8.11 -51.93 -0.42 -0.13 16 46 H 0.35 5.41 7.65 -39.29 -0.30 5.11 16 47 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 50 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.09 0.66 4.06 -51.93 -0.21 0.45 16 52 H 0.07 0.51 7.26 -51.92 -0.38 0.13 16 LS Contribution 403.71 15.07 6.08 6.08 Total: -1.00 -32.70 403.71 -8.31 -41.02 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.57 Total: 11.14 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -0.38 Total: 4.39 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.60 Total: -55.01 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.18 Total: -23.46 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.70 -8.31 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690734412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.220 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds