Wall clock time and date at job start Tue Mar 31 2020 19:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00323 * 2 1 4 4 C 1.53002 * 109.46569 * 353.81401 * 3 2 1 5 5 C 1.52995 * 109.47050 * 113.81397 * 3 2 1 6 6 C 1.53002 * 109.47249 * 304.28318 * 5 3 2 7 7 C 1.50698 * 109.46943 * 233.81693 * 3 2 1 8 8 O 1.21283 * 119.99793 * 239.97372 * 7 3 2 9 9 N 1.34772 * 120.00218 * 59.97405 * 7 3 2 10 10 C 1.47025 * 125.65047 * 184.36545 * 9 7 3 11 11 C 1.54318 * 107.27272 * 178.90518 * 10 9 7 12 12 C 1.55153 * 102.94391 * 337.80969 * 11 10 9 13 13 H 1.08991 * 111.00547 * 277.42641 * 12 11 10 14 14 C 1.52997 * 111.00562 * 153.57257 * 12 11 10 15 15 N 1.46904 * 109.46911 * 66.45433 * 14 12 11 16 16 C 1.46900 * 111.00201 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47490 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99665 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00221 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99931 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00240 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00094 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99903 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00440 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47116 * 59.99493 * 24 22 20 26 26 H 1.48496 * 109.47420 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46973 * 299.99942 * 24 22 20 28 28 C 1.47422 * 125.64883 * 4.06145 * 9 7 3 29 29 H 1.08003 * 120.00267 * 185.45327 * 1 2 3 30 30 H 1.07995 * 119.99661 * 5.44242 * 1 2 3 31 31 H 1.08005 * 119.99618 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46876 * 185.88795 * 4 3 2 33 33 H 1.08995 * 109.47638 * 305.88739 * 4 3 2 34 34 H 1.08997 * 109.47220 * 65.89111 * 4 3 2 35 35 H 1.09000 * 109.47492 * 64.28676 * 5 3 2 36 36 H 1.09002 * 109.47030 * 184.28791 * 5 3 2 37 37 H 1.09000 * 109.47204 * 177.41171 * 6 5 3 38 38 H 1.09000 * 109.47264 * 297.41235 * 6 5 3 39 39 H 1.09000 * 109.47191 * 57.41294 * 6 5 3 40 40 H 1.09000 * 109.88247 * 298.32544 * 10 9 7 41 41 H 1.09001 * 109.88127 * 59.32951 * 10 9 7 42 42 H 1.09003 * 110.71526 * 96.17264 * 11 10 9 43 43 H 1.09004 * 110.71936 * 219.26381 * 11 10 9 44 44 H 1.09001 * 109.47608 * 186.45033 * 14 12 11 45 45 H 1.08999 * 109.47654 * 306.45634 * 14 12 11 46 46 H 1.00899 * 111.00201 * 303.95076 * 15 14 12 47 47 H 1.09000 * 109.47286 * 300.00344 * 16 15 14 48 48 H 1.09006 * 109.47066 * 59.99806 * 16 15 14 49 49 H 0.97002 * 119.99808 * 0.02562 * 19 17 16 50 50 H 0.97000 * 120.00519 * 180.02562 * 23 22 20 51 51 H 1.08997 * 110.37056 * 323.00215 * 28 9 7 52 52 H 1.09009 * 110.36784 * 85.32484 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0766 2.4638 -0.1554 5 6 2.8230 1.4554 1.3196 6 6 1.8435 1.3327 2.4886 7 6 3.0412 1.3206 -1.1468 8 8 4.2284 1.4407 -0.9300 9 7 2.5962 1.2011 -2.4133 10 6 3.4408 1.1099 -3.6133 11 6 2.4988 0.9582 -4.8262 12 6 1.1974 0.4042 -4.1883 13 1 1.2591 -0.6751 -4.0495 14 6 -0.0265 0.7780 -5.0268 15 7 0.0385 0.0886 -6.3224 16 6 -1.1236 0.4240 -7.1561 17 6 -1.0226 -0.3005 -8.4737 18 8 -0.0753 -1.0245 -8.6965 19 7 -1.9847 -0.1438 -9.4044 20 6 -1.8929 -0.8034 -10.6029 21 1 -1.0499 -1.4487 -10.8010 22 6 -2.8845 -0.6415 -11.5626 23 7 -3.9105 0.1434 -11.3214 24 14 -2.7600 -1.5406 -13.1952 25 1 -2.7311 -3.0053 -12.9527 26 1 -3.9349 -1.2019 -14.0378 27 1 -1.5150 -1.1297 -13.8929 28 6 1.1821 1.1338 -2.8244 29 1 -0.5401 -0.9311 0.0889 30 1 -0.5399 0.9311 -0.0887 31 1 1.8500 -0.9354 -0.0004 32 1 1.6273 3.3986 -0.2605 33 1 0.4630 2.3021 -1.0417 34 1 0.4363 2.5163 0.7251 35 1 3.5787 0.6736 1.3952 36 1 3.3062 2.4320 1.3515 37 1 2.3908 1.3939 3.4292 38 1 1.1151 2.1421 2.4388 39 1 1.3267 0.3748 2.4306 40 1 4.0361 2.0170 -3.7174 41 1 4.0969 0.2425 -3.5398 42 1 2.3168 1.9246 -5.2963 43 1 2.9093 0.2513 -5.5473 44 1 -0.9328 0.4779 -4.5008 45 1 -0.0405 1.8557 -5.1890 46 1 0.9008 0.3002 -6.8018 47 1 -2.0373 0.1212 -6.6446 48 1 -1.1457 1.4993 -7.3331 49 1 -2.7420 0.4355 -9.2263 50 1 -4.6030 0.2562 -11.9912 51 1 0.6020 0.5664 -2.0967 52 1 0.7719 2.1374 -2.9383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690734412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:55 Heat of formation + Delta-G solvation = -76.966029 kcal Electronic energy + Delta-G solvation = -29408.851330 eV Core-core repulsion = 25407.581714 eV Total energy + Delta-G solvation = -4001.269616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76541 -40.15382 -39.20249 -37.88592 -36.59277 -35.78262 -33.31182 -33.04227 -32.56779 -30.93223 -29.65345 -28.62204 -27.14353 -26.37782 -24.57784 -24.14070 -22.58276 -21.46878 -20.98703 -20.95128 -19.88086 -19.22127 -18.04471 -18.03507 -17.42660 -16.92958 -16.75354 -16.40080 -16.08751 -15.97870 -15.66167 -15.38683 -15.19253 -14.86361 -14.71353 -14.48312 -14.22172 -14.10744 -13.89912 -13.58456 -13.45148 -13.32093 -13.23512 -13.03983 -12.94964 -12.80496 -12.66810 -12.52452 -12.41766 -12.14077 -12.12738 -12.03907 -11.79897 -11.70195 -11.58974 -11.48649 -11.47939 -10.99160 -10.32360 -10.09061 -9.99497 -9.69518 -9.26722 -8.45035 -5.93511 1.26303 1.40891 1.43005 1.53513 1.56644 1.93414 2.08381 2.30544 2.91935 3.22584 3.36246 3.48421 3.65796 3.70153 3.78282 3.83771 3.96422 4.08776 4.21737 4.32858 4.35120 4.36604 4.42922 4.49021 4.53465 4.57390 4.61537 4.62526 4.68357 4.74780 4.76469 4.80523 4.90295 4.92622 4.98493 5.03146 5.09804 5.13564 5.17272 5.25977 5.34173 5.34963 5.42483 5.46057 5.70019 5.77018 5.91898 6.14283 6.43650 6.47672 6.62528 7.05885 7.14727 7.59107 8.14668 8.71978 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.001789 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.144134 B =15645.732951 C =16190.780962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.159 4.159 3 C -0.040 4.040 4 C -0.152 4.152 5 C -0.094 4.094 6 C -0.146 4.146 7 C 0.531 3.469 8 O -0.589 6.589 9 N -0.611 5.611 10 C 0.105 3.895 11 C -0.125 4.125 12 C -0.091 4.091 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.685 5.685 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.097 3.903 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.344 0.656 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.104 0.896 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 7.002 25.800 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C -0.043 4.043 4 C -0.209 4.209 5 C -0.132 4.132 6 C -0.203 4.203 7 C 0.321 3.679 8 O -0.469 6.469 9 N -0.343 5.343 10 C -0.017 4.017 11 C -0.163 4.163 12 C -0.110 4.110 13 H 0.101 0.899 14 C -0.054 4.054 15 N -0.317 5.317 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.025 4.025 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.162 0.838 47 H 0.125 0.875 48 H 0.086 0.914 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.122 0.878 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.969 6.080 25.957 27.119 hybrid contribution 0.404 0.543 -1.361 1.520 sum 5.373 6.623 24.596 26.033 Atomic orbital electron populations 1.24274 0.94927 1.04035 0.96763 1.22485 0.96451 0.95715 1.03136 1.19889 0.94917 0.96964 0.92552 1.22195 0.98532 0.95433 1.04745 1.21274 0.97693 1.01770 0.92494 1.21823 0.99032 1.02855 0.96598 1.20875 0.88946 0.74745 0.83289 1.90667 1.19400 1.52106 1.84741 1.48518 1.08958 1.71522 1.05302 1.21934 0.94076 1.01225 0.84495 1.22697 0.94962 1.02561 0.96097 1.22233 0.94190 1.00785 0.93835 0.89876 1.21916 0.98314 0.96325 0.88880 1.60025 1.04402 1.62413 1.04893 1.21532 0.96479 0.97958 0.90681 1.20982 0.83726 0.85771 0.87165 1.90493 1.35484 1.43856 1.81309 1.41930 1.22278 1.42716 1.14159 1.19621 1.08256 1.25623 0.92945 0.90410 1.26004 0.94632 0.97814 1.02747 1.69656 1.11060 1.38042 1.37251 0.85014 0.77960 0.78385 0.77132 1.19833 1.19498 1.19776 1.22792 0.81595 1.01813 0.96287 0.86778 0.85901 0.88104 0.92665 0.89992 0.88720 0.93190 0.92294 0.92216 0.91157 0.91864 0.91955 0.92600 0.89734 0.89919 0.89125 0.93401 0.83766 0.87472 0.91399 0.76905 0.91314 0.87793 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 11.88 67.78 0.81 -0.51 16 2 C -0.16 -2.01 5.84 25.64 0.15 -1.86 16 3 C -0.04 -0.61 0.51 -53.68 -0.03 -0.64 16 4 C -0.15 -1.54 6.70 71.98 0.48 -1.06 16 5 C -0.09 -1.52 4.31 30.59 0.13 -1.39 16 6 C -0.15 -1.53 9.34 71.98 0.67 -0.86 16 7 C 0.53 12.10 6.56 87.66 0.58 12.67 16 8 O -0.59 -18.48 16.27 -3.04 -0.05 -18.53 16 9 N -0.61 -11.89 3.31 -812.23 -2.69 -14.58 16 10 C 0.11 2.15 6.87 86.73 0.60 2.74 16 11 C -0.13 -2.22 5.63 31.78 0.18 -2.04 16 12 C -0.09 -1.52 3.28 -9.48 -0.03 -1.55 16 13 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 14 C 0.07 1.33 5.19 86.30 0.45 1.77 16 15 N -0.68 -19.07 6.12 -517.92 -3.17 -22.24 16 16 C 0.07 2.05 6.17 85.56 0.53 2.58 16 17 C 0.44 20.02 7.82 87.66 0.69 20.70 16 18 O -0.62 -33.89 15.78 -3.06 -0.05 -33.94 16 19 N -0.57 -28.68 5.29 -306.99 -1.62 -30.31 16 20 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 24 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 28 C 0.10 1.32 4.46 86.78 0.39 1.71 16 29 H 0.11 0.76 8.06 -2.91 -0.02 0.73 16 30 H 0.12 0.62 5.72 -2.91 -0.02 0.60 16 31 H 0.10 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.08 0.64 4.29 -2.39 -0.01 0.63 16 34 H 0.09 0.61 5.86 -2.39 -0.01 0.59 16 35 H 0.05 1.00 7.98 -2.39 -0.02 0.98 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.55 6.55 -2.39 -0.02 0.54 16 39 H 0.06 0.63 6.91 -2.39 -0.02 0.61 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.36 8.01 -2.39 -0.02 1.34 16 43 H 0.08 1.61 8.12 -2.38 -0.02 1.59 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.05 0.72 8.11 -2.39 -0.02 0.70 16 46 H 0.34 10.26 7.65 -89.69 -0.69 9.57 16 47 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 48 H 0.07 1.81 8.14 -2.38 -0.02 1.80 16 49 H 0.40 18.71 7.90 -92.71 -0.73 17.97 16 50 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 51 H 0.10 1.17 4.06 -2.39 -0.01 1.16 16 52 H 0.09 0.94 7.26 -2.38 -0.02 0.92 16 Total: -1.00 -72.86 403.71 1.10 -71.76 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.49 Total: 37.70 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 6.86 Total: 14.15 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -7.20 Total: -115.60 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.10 Total: -52.47 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -72.86 1.10 -71.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690734412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.209 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds