Wall clock time and date at job start Tue Mar 31 2020 20:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 119.99440 * 2 1 4 4 C 1.50702 * 120.00362 * 179.97438 * 2 1 3 5 5 C 1.52993 * 109.47102 * 114.79410 * 4 2 1 6 6 C 1.53002 * 109.47125 * 234.79629 * 4 2 1 7 7 C 1.50699 * 109.46840 * 354.79168 * 4 2 1 8 8 O 1.21276 * 119.99764 * 120.18889 * 7 4 2 9 9 N 1.34777 * 120.00392 * 300.18708 * 7 4 2 10 10 C 1.46498 * 119.99814 * 6.01262 * 9 7 4 11 11 C 1.46498 * 120.00345 * 186.01269 * 9 7 4 12 12 C 1.52997 * 109.47347 * 89.99713 * 11 9 7 13 13 H 1.08997 * 112.95488 * 74.66899 * 12 11 9 14 14 C 1.53938 * 113.76264 * 206.31442 * 12 11 9 15 15 C 1.53935 * 86.33895 * 138.03704 * 14 12 11 16 16 N 1.47961 * 113.76129 * 303.02212 * 12 11 9 17 17 C 1.46903 * 110.99775 * 108.09533 * 16 12 11 18 18 C 1.50697 * 109.47004 * 170.00176 * 17 16 12 19 19 O 1.21299 * 120.00014 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00283 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00250 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00158 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99620 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99973 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46977 * 90.00425 * 25 23 21 27 27 H 1.48497 * 109.46981 * 210.00153 * 25 23 21 28 28 H 1.48498 * 109.47382 * 330.00172 * 25 23 21 29 29 H 1.07998 * 120.00278 * 357.33827 * 1 2 3 30 30 H 1.07995 * 119.99379 * 177.34424 * 1 2 3 31 31 H 1.09009 * 109.46832 * 239.99595 * 3 2 1 32 32 H 1.08995 * 109.47465 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47318 * 119.99980 * 3 2 1 34 34 H 1.09001 * 109.47211 * 175.62984 * 5 4 2 35 35 H 1.09006 * 109.47107 * 295.62813 * 5 4 2 36 36 H 1.08998 * 109.47166 * 55.62187 * 5 4 2 37 37 H 1.09006 * 109.46848 * 317.56650 * 6 4 2 38 38 H 1.09001 * 109.47254 * 77.56739 * 6 4 2 39 39 H 1.08994 * 109.47115 * 197.57221 * 6 4 2 40 40 H 1.08995 * 109.47645 * 95.37019 * 10 9 7 41 41 H 1.09007 * 109.47224 * 215.37268 * 10 9 7 42 42 H 1.08999 * 109.47370 * 335.36916 * 10 9 7 43 43 H 1.08995 * 109.47342 * 210.00428 * 11 9 7 44 44 H 1.09007 * 109.46636 * 329.99587 * 11 9 7 45 45 H 1.08993 * 113.73447 * 252.40012 * 14 12 11 46 46 H 1.09004 * 113.72717 * 23.57862 * 14 12 11 47 47 H 1.09002 * 113.75696 * 90.60109 * 15 14 12 48 48 H 1.09004 * 113.76105 * 221.85274 * 15 14 12 49 49 H 1.08999 * 109.47559 * 290.00079 * 17 16 12 50 50 H 1.08999 * 109.46868 * 50.00437 * 17 16 12 51 51 H 0.97005 * 119.99886 * 359.97438 * 20 18 17 52 52 H 0.96999 * 119.99660 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0637 -1.3051 0.0006 5 6 2.8425 -1.4448 -1.3088 6 6 3.0388 -1.3304 1.1793 7 6 1.0895 -2.4475 0.1301 8 8 1.0269 -3.2924 -0.7377 9 7 0.2877 -2.5304 1.2103 10 6 0.2680 -1.4441 2.1929 11 6 -0.5641 -3.7069 1.4018 12 6 0.1980 -4.7631 2.2045 13 1 0.2802 -4.5153 3.2627 14 6 -0.2750 -6.2039 1.9399 15 6 1.2157 -6.5877 1.9367 16 7 1.4787 -5.1721 1.5867 17 6 2.6211 -4.6440 2.3445 18 6 3.8933 -5.2745 1.8399 19 8 3.8526 -6.0839 0.9373 20 7 5.0765 -4.9392 2.3913 21 6 6.2340 -5.5124 1.9318 22 1 6.1977 -6.2330 1.1282 23 6 7.4538 -5.1671 2.5008 24 7 8.5632 -5.7169 2.0606 25 14 7.5165 -3.9212 3.8912 26 1 7.3908 -4.6252 5.1926 27 1 8.8098 -3.1929 3.8453 28 1 6.3988 -2.9551 3.7410 29 1 -0.5400 0.9343 0.0434 30 1 -0.5399 -0.9343 -0.0433 31 1 2.6902 1.3629 -0.8900 32 1 1.3551 2.1336 -0.0005 33 1 2.6901 1.3630 0.8900 34 1 3.4481 -2.3505 -1.2765 35 1 2.1432 -1.5049 -2.1429 36 1 3.4909 -0.5786 -1.4401 37 1 3.5297 -0.3609 1.2656 38 1 2.4928 -1.5442 2.0981 39 1 3.7888 -2.1038 1.0138 40 1 -0.5530 -0.7640 1.9664 41 1 0.1307 -1.8596 3.1913 42 1 1.2119 -0.9004 2.1525 43 1 -1.4650 -3.4188 1.9434 44 1 -0.8399 -4.1176 0.4305 45 1 -0.8384 -6.6393 2.7651 46 1 -0.7653 -6.3344 0.9751 47 1 1.5975 -6.8742 2.9167 48 1 1.4856 -7.2946 1.1520 49 1 2.6749 -3.5631 2.2146 50 1 2.4946 -4.8770 3.4018 51 1 5.1091 -4.2917 3.1128 52 1 9.4148 -5.4756 2.4575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707046708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:36 Heat of formation + Delta-G solvation = -12.345277 kcal Electronic energy + Delta-G solvation = -32378.848372 eV Core-core repulsion = 28380.380922 eV Total energy + Delta-G solvation = -3998.467449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.04660 -40.98244 -39.63779 -37.68688 -36.40259 -35.99597 -33.81296 -33.02807 -32.10623 -30.23915 -28.60004 -27.88602 -27.58746 -27.41833 -25.16616 -24.86928 -23.29219 -21.34681 -21.09680 -20.43402 -20.29845 -18.95073 -17.84148 -17.68857 -17.33979 -16.95922 -16.84870 -16.57585 -16.34816 -15.66400 -15.53767 -15.22179 -14.93257 -14.69636 -14.61345 -14.36647 -14.29635 -14.08849 -13.95339 -13.71129 -13.56466 -13.37718 -13.24918 -13.01314 -12.96336 -12.76715 -12.74163 -12.63489 -12.46291 -12.30589 -12.23235 -12.03191 -11.98027 -11.74677 -11.72008 -11.59771 -11.51051 -10.48049 -10.46544 -10.27886 -9.82758 -9.70390 -9.30267 -8.43508 -6.04852 1.25467 1.28503 1.32140 1.41422 1.79929 1.91492 2.11275 2.20481 2.67210 3.11141 3.14681 3.49552 3.60197 3.64983 3.80860 3.98777 4.02863 4.10729 4.21308 4.22098 4.26757 4.29998 4.36720 4.39264 4.47339 4.56752 4.61736 4.69116 4.74514 4.78590 4.80059 4.84405 4.85972 4.91734 4.96136 4.99873 5.01420 5.05643 5.18731 5.26121 5.26839 5.28573 5.44593 5.51390 5.68166 5.76815 5.89471 5.94051 6.12064 6.52462 6.57110 6.85278 7.35212 7.39675 7.93836 8.74658 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.004762 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.808410 B = 5879.023805 C = 7522.140542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.046 4.046 5 C -0.121 4.121 6 C -0.155 4.155 7 C 0.525 3.475 8 O -0.566 6.566 9 N -0.609 5.609 10 C 0.050 3.950 11 C 0.136 3.864 12 C 0.014 3.986 13 H 0.105 0.895 14 C -0.114 4.114 15 C 0.004 3.996 16 N -0.467 5.467 17 C 0.022 3.978 18 C 0.451 3.549 19 O -0.609 6.609 20 N -0.590 5.590 21 C -0.328 4.328 22 H 0.048 0.952 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.255 1.255 27 H -0.271 1.271 28 H -0.230 1.230 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.033 0.967 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.060 0.940 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.104 0.896 50 H 0.082 0.918 51 H 0.388 0.612 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.241 18.679 8.494 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.120 4.120 3 C -0.171 4.171 4 C -0.049 4.049 5 C -0.179 4.179 6 C -0.212 4.212 7 C 0.313 3.687 8 O -0.443 6.443 9 N -0.342 5.342 10 C -0.091 4.091 11 C 0.013 3.987 12 C -0.095 4.095 13 H 0.123 0.877 14 C -0.152 4.152 15 C -0.125 4.125 16 N -0.190 5.190 17 C -0.110 4.110 18 C 0.238 3.762 19 O -0.493 6.493 20 N -0.232 5.232 21 C -0.457 4.457 22 H 0.067 0.933 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.782 3.218 26 H -0.179 1.179 27 H -0.196 1.196 28 H -0.153 1.153 29 H 0.146 0.854 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.140 0.860 44 H 0.079 0.921 45 H 0.124 0.876 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.122 0.878 50 H 0.100 0.900 51 H 0.223 0.777 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.926 17.855 6.758 29.073 hybrid contribution 1.164 -0.578 0.808 1.530 sum -20.762 17.277 7.565 28.050 Atomic orbital electron populations 1.24061 0.95021 1.02815 1.00641 1.21415 0.95196 0.93710 1.01654 1.20895 1.00629 0.92716 1.02866 1.19816 0.94968 0.92320 0.97817 1.21594 0.99365 1.01256 0.95652 1.22319 0.98243 1.03770 0.96839 1.20614 0.80706 0.85946 0.81401 1.90709 1.68845 1.42880 1.41907 1.47740 1.42313 1.20633 1.23517 1.22777 1.04437 0.89999 0.91911 1.21463 0.92725 0.84272 1.00269 1.24127 0.90550 0.96187 0.98683 0.87683 1.23231 0.94470 0.93978 1.03570 1.23717 0.97169 0.92088 0.99486 1.68550 1.00145 1.04579 1.45769 1.22473 0.90154 1.01116 0.97234 1.20845 0.85543 0.85044 0.84729 1.90558 1.87286 1.38270 1.33155 1.41997 1.05623 1.40753 1.34810 1.18944 0.84737 1.23372 1.18630 0.93337 1.26130 0.93469 1.00269 1.01375 1.69815 0.99061 1.44748 1.43918 0.85399 0.79941 0.78549 0.77881 1.17909 1.19630 1.15283 0.85405 0.89460 0.91723 0.89919 0.90239 0.95540 0.93292 0.89765 0.88451 0.89239 0.94790 0.90096 0.89633 0.89078 0.86041 0.92126 0.87599 0.89795 0.91415 0.93111 0.87827 0.90044 0.77706 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 10.37 67.77 0.70 -2.19 16 2 C -0.12 -2.05 3.60 -16.49 -0.06 -2.11 16 3 C -0.11 -1.38 9.43 71.24 0.67 -0.71 16 4 C -0.05 -1.16 0.61 -53.68 -0.03 -1.19 16 5 C -0.12 -3.67 7.69 71.98 0.55 -3.12 16 6 C -0.16 -3.59 6.90 71.98 0.50 -3.09 16 7 C 0.52 15.70 4.37 87.66 0.38 16.09 16 8 O -0.57 -23.56 15.28 -3.02 -0.05 -23.60 16 9 N -0.61 -12.74 2.03 -846.78 -1.72 -14.46 16 10 C 0.05 0.60 7.91 127.77 1.01 1.61 16 11 C 0.14 2.68 5.66 86.38 0.49 3.17 16 12 C 0.01 0.31 3.58 45.02 0.16 0.47 16 13 H 0.11 1.68 7.79 -2.39 -0.02 1.66 16 14 C -0.11 -2.50 7.85 31.24 0.25 -2.26 16 15 C 0.00 0.14 6.77 86.36 0.59 0.73 16 16 N -0.47 -16.02 4.96 -885.21 -4.39 -20.42 16 17 C 0.02 0.76 5.31 85.56 0.45 1.22 16 18 C 0.45 22.32 7.59 87.66 0.67 22.99 16 19 O -0.61 -37.28 15.14 -3.09 -0.05 -37.33 16 20 N -0.59 -29.42 5.09 -306.98 -1.56 -30.98 16 21 C -0.33 -20.02 10.16 84.04 0.85 -19.17 16 22 H 0.05 3.56 7.39 -2.91 -0.02 3.54 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 24 N -0.93 -57.66 13.96 21.67 0.30 -57.36 16 25 Si 0.96 39.11 27.74 68.60 1.90 41.02 16 26 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 28 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 29 H 0.13 1.28 7.84 -2.91 -0.02 1.26 16 30 H 0.09 1.68 5.29 -2.91 -0.02 1.67 16 31 H 0.06 0.86 7.38 -2.38 -0.02 0.84 16 32 H 0.08 0.70 7.79 -2.39 -0.02 0.68 16 33 H 0.08 0.80 6.87 -2.39 -0.02 0.78 16 34 H 0.03 1.00 8.06 -2.39 -0.02 0.98 16 35 H 0.05 1.55 7.98 -2.38 -0.02 1.53 16 36 H 0.08 2.04 7.23 -2.39 -0.02 2.02 16 37 H 0.10 1.70 6.35 -2.38 -0.02 1.68 16 38 H 0.09 1.69 4.21 -2.39 -0.01 1.68 16 39 H 0.03 1.05 7.64 -2.39 -0.02 1.04 16 40 H 0.08 0.72 6.15 -2.39 -0.01 0.70 16 41 H 0.09 0.66 8.11 -2.38 -0.02 0.64 16 42 H 0.09 1.14 3.34 -2.39 -0.01 1.13 16 43 H 0.12 1.31 8.07 -2.39 -0.02 1.30 16 44 H 0.06 1.59 7.08 -2.38 -0.02 1.58 16 45 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.97 7.92 -2.39 -0.02 1.95 16 47 H 0.07 2.09 7.78 -2.39 -0.02 2.07 16 48 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 49 H 0.10 3.24 5.34 -2.39 -0.01 3.23 16 50 H 0.08 2.28 7.69 -2.39 -0.02 2.26 16 51 H 0.39 15.94 5.76 -92.70 -0.53 15.41 16 52 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -91.59 391.86 2.43 -89.16 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: 0.34 Total: 41.87 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 7.65 Total: 12.11 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -7.37 Total: -123.22 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -0.09 Total: -60.93 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.90 Total: 41.02 kcal Total: -91.59 2.43 -89.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707046708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.814 kcal (2) G-P(sol) polarization free energy of solvation -91.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds