Wall clock time and date at job start Tue Mar 31 2020 20:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 H 1.09000 * 109.47299 * 55.44565 * 3 2 1 5 5 O 1.42901 * 109.47202 * 295.44252 * 3 2 1 6 6 C 1.52999 * 109.47052 * 175.44677 * 3 2 1 7 7 H 1.09006 * 109.45563 * 184.98027 * 6 3 2 8 8 C 1.53033 * 109.46477 * 65.00641 * 6 3 2 9 9 C 1.53119 * 109.27926 * 180.80531 * 8 6 3 10 10 C 1.53121 * 109.16083 * 57.65401 * 9 8 6 11 11 C 1.53039 * 109.27784 * 302.34415 * 10 9 8 12 12 N 1.46846 * 109.46164 * 304.95054 * 6 3 2 13 13 C 1.46900 * 111.00315 * 305.85984 * 12 6 3 14 14 C 1.50707 * 109.46621 * 299.71986 * 13 12 6 15 15 O 1.21280 * 120.00314 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99519 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99664 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47438 * 270.00221 * 17 16 14 19 19 H 1.08001 * 119.99947 * 359.72717 * 18 17 16 20 20 C 1.37878 * 120.00259 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99636 * 359.72723 * 20 18 17 22 22 Si 1.86791 * 120.00152 * 179.72491 * 20 18 17 23 23 H 1.48501 * 109.47226 * 60.00413 * 22 20 18 24 24 H 1.48501 * 109.47405 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47247 * 299.99977 * 22 20 18 26 26 C 1.46499 * 120.00063 * 359.97438 * 16 14 13 27 27 C 1.52989 * 109.47344 * 269.99635 * 26 16 14 28 28 C 1.47202 * 109.47427 * 180.02562 * 27 26 16 29 29 N 6.54375 * 69.07260 * 74.61093 * 2 1 3 30 30 H 1.08997 * 109.47516 * 59.99428 * 1 2 3 31 31 H 1.08995 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46664 * 299.99914 * 1 2 3 33 33 H 1.09010 * 109.46664 * 240.00086 * 2 1 3 34 34 H 1.08997 * 109.47516 * 120.00572 * 2 1 3 35 35 H 0.96705 * 114.00110 * 300.00096 * 5 3 2 36 36 H 1.09000 * 109.50830 * 60.86528 * 8 6 3 37 37 H 1.09003 * 109.53785 * 300.76282 * 8 6 3 38 38 H 1.08996 * 109.52322 * 297.74959 * 9 8 6 39 39 H 1.09000 * 109.57969 * 177.58894 * 9 8 6 40 40 H 1.09001 * 109.50571 * 182.40637 * 10 9 8 41 41 H 1.09004 * 109.53488 * 62.30510 * 10 9 8 42 42 H 1.08999 * 109.46479 * 299.16615 * 11 10 9 43 43 H 1.08998 * 109.45341 * 179.18804 * 11 10 9 44 44 H 1.08993 * 109.47723 * 179.72236 * 13 12 6 45 45 H 1.09001 * 109.46906 * 59.71614 * 13 12 6 46 46 H 1.09000 * 109.47092 * 149.99727 * 17 16 14 47 47 H 1.09006 * 109.47377 * 30.00579 * 17 16 14 48 48 H 0.97000 * 119.99439 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.47195 * 30.00316 * 26 16 14 50 50 H 1.09001 * 109.46587 * 149.99949 * 26 16 14 51 51 H 1.09002 * 109.47531 * 300.00476 * 27 26 16 52 52 H 1.09001 * 109.47022 * 60.00580 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6116 1.9793 0.8464 5 8 1.6531 2.0845 -1.2166 6 6 3.5657 1.4439 0.1145 7 1 3.9222 2.4702 0.2035 8 6 4.1715 0.8004 -1.1348 9 6 5.6973 0.7859 -1.0068 10 6 6.0877 0.0274 0.2647 11 6 5.4264 0.6934 1.4736 12 7 3.9679 0.6815 1.3034 13 6 3.2934 1.1875 2.5063 14 6 3.6626 2.6331 2.7186 15 8 4.4139 3.1872 1.9443 16 7 3.1577 3.3103 3.7689 17 6 3.5170 4.7154 3.9756 18 6 4.7502 4.7971 4.8379 19 1 5.2168 3.8929 5.1999 20 6 5.2797 6.0263 5.1690 21 7 4.7117 7.1274 4.7278 22 14 6.8038 6.1277 6.2443 23 1 7.9273 5.4207 5.5785 24 1 7.1687 7.5520 6.4527 25 1 6.5267 5.4911 7.5570 26 6 2.2497 2.6412 4.7038 27 6 0.8068 2.8147 4.2258 28 6 -0.1056 2.1429 5.1655 29 7 -0.8073 1.6220 5.8929 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.9995 1.6594 -2.0132 36 1 3.8857 1.3755 -2.0155 37 1 3.8049 -0.2215 -1.2328 38 1 6.0677 1.8093 -0.9486 39 1 6.1319 0.2899 -1.8747 40 1 7.1709 0.0503 0.3841 41 1 5.7516 -1.0069 0.1899 42 1 5.7740 1.7231 1.5562 43 1 5.6909 0.1470 2.3789 44 1 3.6053 0.6022 3.3712 45 1 2.2140 1.1028 2.3804 46 1 2.6938 5.2322 4.4689 47 1 3.7155 5.1852 3.0122 48 1 5.0841 7.9922 4.9611 49 1 2.4924 1.5795 4.7491 50 1 2.3596 3.0816 5.6949 51 1 0.5641 3.8763 4.1806 52 1 0.6970 2.3743 3.2348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114187557.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:21 Heat of formation + Delta-G solvation = -62.043628 kcal Electronic energy + Delta-G solvation = -31828.162503 eV Core-core repulsion = 27827.539972 eV Total energy + Delta-G solvation = -4000.622532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.59513 -38.65283 -37.03630 -36.60299 -35.26449 -33.71320 -32.88501 -32.54525 -30.88989 -30.74286 -28.46044 -26.62677 -25.92126 -24.05819 -23.46030 -22.85106 -22.09218 -21.14486 -19.35864 -18.54749 -17.65476 -16.77908 -16.68116 -16.46776 -16.12781 -15.68635 -15.21863 -14.81920 -14.72945 -14.63543 -14.50301 -14.19562 -13.91460 -13.74032 -13.44474 -13.09555 -13.02416 -12.81908 -12.65232 -12.46797 -12.37907 -12.12816 -12.07394 -11.82291 -11.78777 -11.66053 -11.31435 -11.16526 -11.10634 -11.04506 -10.89805 -10.83576 -10.65562 -10.58635 -10.37743 -10.23942 -10.09767 -9.79267 -9.69106 -9.62612 -8.50588 -7.90957 -7.79916 -6.12218 -4.17234 2.69979 2.78980 3.17181 3.26914 3.32082 3.34689 3.61252 3.88583 4.17200 4.38225 4.44138 4.65041 4.79899 4.88821 4.89318 4.98986 5.04186 5.09124 5.13861 5.16581 5.23113 5.24091 5.36232 5.46851 5.51145 5.55531 5.60185 5.69259 5.72832 5.75899 5.79159 5.86598 5.92034 5.97725 6.02607 6.05245 6.15483 6.17448 6.25296 6.29285 6.37454 6.53761 6.84449 7.06413 7.13930 7.32510 7.38086 7.55743 7.64649 7.82971 8.13307 8.19895 8.77194 8.91720 9.48339 10.95820 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.004485 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.077409 B = 6241.087955 C = 8193.603040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.112 3.888 4 H 0.092 0.908 5 O -0.558 6.558 6 C 0.033 3.967 7 H 0.093 0.907 8 C -0.113 4.113 9 C -0.119 4.119 10 C -0.111 4.111 11 C 0.038 3.962 12 N -0.502 5.502 13 C 0.021 3.979 14 C 0.476 3.524 15 O -0.528 6.528 16 N -0.594 5.594 17 C 0.244 3.756 18 C -0.529 4.529 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.116 3.884 27 C -0.050 4.050 28 C 0.217 3.783 29 N -0.443 5.443 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.369 0.631 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.033 0.967 47 H 0.046 0.954 48 H 0.264 0.736 49 H 0.076 0.924 50 H 0.095 0.905 51 H 0.117 0.883 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -14.891 -10.074 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 C 0.052 3.948 4 H 0.110 0.890 5 O -0.363 6.363 6 C -0.075 4.075 7 H 0.110 0.890 8 C -0.151 4.151 9 C -0.156 4.156 10 C -0.149 4.149 11 C -0.089 4.089 12 N -0.226 5.226 13 C -0.110 4.110 14 C 0.262 3.738 15 O -0.406 6.406 16 N -0.326 5.326 17 C 0.125 3.875 18 C -0.568 4.568 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.531 5.531 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.010 4.010 27 C -0.092 4.092 28 C -0.102 4.102 29 N -0.121 5.121 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.217 0.783 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.113 0.887 51 H 0.135 0.865 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.443 -15.233 -9.069 18.545 hybrid contribution 1.640 0.836 0.316 1.867 sum -3.803 -14.397 -8.753 17.273 Atomic orbital electron populations 1.21751 0.95974 1.01036 1.02048 1.22207 0.95693 0.97258 1.03632 1.21984 0.92725 0.92745 0.87320 0.89037 1.86612 1.76545 1.57524 1.15601 1.22626 0.95058 0.99454 0.90392 0.88962 1.21621 0.95945 1.00837 0.96654 1.21518 0.95606 1.00946 0.97547 1.21523 0.99440 0.99473 0.94458 1.22308 0.86848 1.02009 0.97776 1.62428 1.07726 1.51292 1.01195 1.22496 1.00962 0.92417 0.95164 1.21657 0.81382 0.89278 0.81478 1.90593 1.35536 1.70005 1.44427 1.48376 1.44497 1.14861 1.24843 1.19333 0.95676 0.74310 0.98157 1.21340 1.11595 0.92449 1.31375 0.92544 1.24909 0.97256 0.95551 0.96175 1.69913 1.40541 0.97687 1.44990 0.86591 0.83299 0.77029 0.80694 1.20231 1.21178 1.20242 1.21318 0.85929 0.98476 0.95300 1.19887 0.92216 1.01808 0.95262 1.29103 0.93808 0.93286 0.93959 1.81256 1.10455 1.10132 1.10216 0.92467 0.93179 0.93035 0.91854 0.89654 0.78350 0.91872 0.91419 0.91800 0.92331 0.91885 0.91803 0.91028 0.91430 0.88133 0.88335 0.94884 0.93642 0.92599 0.90562 0.88699 0.86462 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.81 37.16 0.36 -0.98 16 2 C -0.15 -1.40 4.90 -26.73 -0.13 -1.53 16 3 C 0.11 1.27 2.32 -26.73 -0.06 1.21 16 4 H 0.09 1.15 6.57 -51.93 -0.34 0.81 16 5 O -0.56 -6.64 12.76 -35.23 -0.45 -7.09 16 6 C 0.03 0.42 1.46 -67.73 -0.10 0.32 16 7 H 0.09 1.57 5.53 -51.93 -0.29 1.28 16 8 C -0.11 -1.17 4.69 -26.65 -0.13 -1.30 16 9 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 10 C -0.11 -1.23 6.09 -26.65 -0.16 -1.40 16 11 C 0.04 0.51 5.07 -3.83 -0.02 0.49 16 12 N -0.50 -6.17 3.75 -228.12 -0.86 -7.02 16 13 C 0.02 0.26 3.58 -4.97 -0.02 0.24 16 14 C 0.48 8.14 7.03 -10.98 -0.08 8.06 16 15 O -0.53 -11.20 11.19 5.56 0.06 -11.13 16 16 N -0.59 -10.37 2.46 -175.06 -0.43 -10.80 16 17 C 0.24 5.67 5.16 -5.20 -0.03 5.64 16 18 C -0.53 -13.85 9.39 -34.44 -0.32 -14.18 16 19 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 22 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 C 0.12 1.49 5.17 -4.05 -0.02 1.46 16 27 C -0.05 -0.52 6.03 -29.52 -0.18 -0.69 16 28 C 0.22 2.57 15.44 -20.72 -0.32 2.25 16 29 N -0.44 -6.42 18.54 42.19 0.78 -5.64 16 30 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.06 0.55 6.77 -51.92 -0.35 0.20 16 34 H 0.08 0.82 6.69 -51.93 -0.35 0.47 16 35 H 0.37 3.18 7.21 45.56 0.33 3.51 16 36 H 0.06 0.59 6.77 -51.93 -0.35 0.24 16 37 H 0.07 0.64 6.64 -51.93 -0.34 0.30 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.23 5.82 -51.93 -0.30 0.93 16 43 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 44 H 0.10 1.11 7.36 -51.93 -0.38 0.73 16 45 H 0.10 1.01 4.81 -51.93 -0.25 0.76 16 46 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 48 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 50 H 0.09 1.31 8.07 -51.93 -0.42 0.90 16 51 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 52 H 0.10 0.88 7.22 -51.93 -0.38 0.50 16 LS Contribution 400.84 15.07 6.04 6.04 Total: -1.00 -31.79 400.84 -8.48 -40.27 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.89 Total: 4.18 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.45 Total: -0.23 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.23 Total: -48.05 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.39 Total: -18.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.79 -8.48 -40.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114187557.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.776 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds