Wall clock time and date at job start Tue Mar 31 2020 20:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 H 1.09000 * 109.47299 * 55.44565 * 3 2 1 5 5 O 1.42901 * 109.47202 * 295.44252 * 3 2 1 6 6 C 1.52999 * 109.47052 * 175.44677 * 3 2 1 7 7 H 1.09006 * 109.45563 * 184.98027 * 6 3 2 8 8 C 1.53033 * 109.46477 * 65.00641 * 6 3 2 9 9 C 1.53119 * 109.27926 * 180.80531 * 8 6 3 10 10 C 1.53121 * 109.16083 * 57.65401 * 9 8 6 11 11 C 1.53039 * 109.27784 * 302.34415 * 10 9 8 12 12 N 1.46846 * 109.46164 * 304.95054 * 6 3 2 13 13 C 1.46900 * 111.00315 * 305.85984 * 12 6 3 14 14 C 1.50707 * 109.46621 * 299.71986 * 13 12 6 15 15 O 1.21280 * 120.00314 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99519 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99664 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47438 * 270.00221 * 17 16 14 19 19 H 1.08001 * 119.99947 * 359.72717 * 18 17 16 20 20 C 1.37878 * 120.00259 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99636 * 359.72723 * 20 18 17 22 22 Si 1.86791 * 120.00152 * 179.72491 * 20 18 17 23 23 H 1.48501 * 109.47226 * 60.00413 * 22 20 18 24 24 H 1.48501 * 109.47405 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47247 * 299.99977 * 22 20 18 26 26 C 1.46499 * 120.00063 * 359.97438 * 16 14 13 27 27 C 1.52989 * 109.47344 * 269.99635 * 26 16 14 28 28 C 1.47202 * 109.47427 * 180.02562 * 27 26 16 29 29 N 6.54375 * 69.07260 * 74.61093 * 2 1 3 30 30 H 1.08997 * 109.47516 * 59.99428 * 1 2 3 31 31 H 1.08995 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46664 * 299.99914 * 1 2 3 33 33 H 1.09010 * 109.46664 * 240.00086 * 2 1 3 34 34 H 1.08997 * 109.47516 * 120.00572 * 2 1 3 35 35 H 0.96705 * 114.00110 * 300.00096 * 5 3 2 36 36 H 1.09000 * 109.50830 * 60.86528 * 8 6 3 37 37 H 1.09003 * 109.53785 * 300.76282 * 8 6 3 38 38 H 1.08996 * 109.52322 * 297.74959 * 9 8 6 39 39 H 1.09000 * 109.57969 * 177.58894 * 9 8 6 40 40 H 1.09001 * 109.50571 * 182.40637 * 10 9 8 41 41 H 1.09004 * 109.53488 * 62.30510 * 10 9 8 42 42 H 1.08999 * 109.46479 * 299.16615 * 11 10 9 43 43 H 1.08998 * 109.45341 * 179.18804 * 11 10 9 44 44 H 1.08993 * 109.47723 * 179.72236 * 13 12 6 45 45 H 1.09001 * 109.46906 * 59.71614 * 13 12 6 46 46 H 1.09000 * 109.47092 * 149.99727 * 17 16 14 47 47 H 1.09006 * 109.47377 * 30.00579 * 17 16 14 48 48 H 0.97000 * 119.99439 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.47195 * 30.00316 * 26 16 14 50 50 H 1.09001 * 109.46587 * 149.99949 * 26 16 14 51 51 H 1.09002 * 109.47531 * 300.00476 * 27 26 16 52 52 H 1.09001 * 109.47022 * 60.00580 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6116 1.9793 0.8464 5 8 1.6531 2.0845 -1.2166 6 6 3.5657 1.4439 0.1145 7 1 3.9222 2.4702 0.2035 8 6 4.1715 0.8004 -1.1348 9 6 5.6973 0.7859 -1.0068 10 6 6.0877 0.0274 0.2647 11 6 5.4264 0.6934 1.4736 12 7 3.9679 0.6815 1.3034 13 6 3.2934 1.1875 2.5063 14 6 3.6626 2.6331 2.7186 15 8 4.4139 3.1872 1.9443 16 7 3.1577 3.3103 3.7689 17 6 3.5170 4.7154 3.9756 18 6 4.7502 4.7971 4.8379 19 1 5.2168 3.8929 5.1999 20 6 5.2797 6.0263 5.1690 21 7 4.7117 7.1274 4.7278 22 14 6.8038 6.1277 6.2443 23 1 7.9273 5.4207 5.5785 24 1 7.1687 7.5520 6.4527 25 1 6.5267 5.4911 7.5570 26 6 2.2497 2.6412 4.7038 27 6 0.8068 2.8147 4.2258 28 6 -0.1056 2.1429 5.1655 29 7 -0.8073 1.6220 5.8929 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.9995 1.6594 -2.0132 36 1 3.8857 1.3755 -2.0155 37 1 3.8049 -0.2215 -1.2328 38 1 6.0677 1.8093 -0.9486 39 1 6.1319 0.2899 -1.8747 40 1 7.1709 0.0503 0.3841 41 1 5.7516 -1.0069 0.1899 42 1 5.7740 1.7231 1.5562 43 1 5.6909 0.1470 2.3789 44 1 3.6053 0.6022 3.3712 45 1 2.2140 1.1028 2.3804 46 1 2.6938 5.2322 4.4689 47 1 3.7155 5.1852 3.0122 48 1 5.0841 7.9922 4.9611 49 1 2.4924 1.5795 4.7491 50 1 2.3596 3.0816 5.6949 51 1 0.5641 3.8763 4.1806 52 1 0.6970 2.3743 3.2348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114187557.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:20 Heat of formation + Delta-G solvation = -83.592737 kcal Electronic energy + Delta-G solvation = -31829.096943 eV Core-core repulsion = 27827.539972 eV Total energy + Delta-G solvation = -4001.556971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73428 -39.83016 -38.08586 -37.60863 -36.61274 -34.99863 -34.49768 -33.41957 -32.16735 -31.64401 -29.94416 -28.01893 -26.86467 -25.35178 -24.83337 -23.80623 -23.27287 -22.06099 -20.44032 -19.78865 -18.82714 -18.35348 -17.96688 -17.71087 -17.08629 -16.92886 -16.46876 -16.11621 -15.82171 -15.74144 -15.58536 -15.41373 -15.09842 -14.71324 -14.40848 -14.38457 -14.07960 -13.96126 -13.73473 -13.67072 -13.53869 -13.40834 -13.18789 -12.96852 -12.82824 -12.74075 -12.65386 -12.61464 -12.53446 -12.18746 -12.07805 -11.96650 -11.87426 -11.76175 -11.64551 -11.44102 -11.27226 -11.09521 -10.95705 -10.60570 -10.55650 -9.44884 -9.02031 -8.19474 -6.32116 1.37799 1.40181 1.47102 1.66728 1.82872 1.88218 2.29718 2.44273 2.87242 3.10038 3.14330 3.60020 3.76358 3.79408 3.90582 3.98527 4.07592 4.10320 4.13733 4.22893 4.30365 4.40128 4.47693 4.55513 4.57868 4.65986 4.75631 4.79215 4.82934 4.92891 4.94923 4.99633 5.03273 5.04932 5.09579 5.14190 5.18371 5.27238 5.28832 5.32556 5.35217 5.47341 5.56012 5.59723 5.62863 5.87220 6.00937 6.09542 6.11692 6.59818 6.73759 6.81802 6.89269 7.33328 7.52565 8.86918 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.004485 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.077409 B = 6241.087955 C = 8193.603040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.115 3.885 4 H 0.078 0.922 5 O -0.575 6.575 6 C 0.036 3.964 7 H 0.042 0.958 8 C -0.109 4.109 9 C -0.120 4.120 10 C -0.106 4.106 11 C 0.037 3.963 12 N -0.484 5.484 13 C 0.029 3.971 14 C 0.470 3.530 15 O -0.575 6.575 16 N -0.597 5.597 17 C 0.262 3.738 18 C -0.537 4.537 19 H 0.053 0.947 20 C 0.011 3.989 21 N -0.927 5.927 22 Si 0.957 3.043 23 H -0.280 1.280 24 H -0.283 1.283 25 H -0.262 1.262 26 C 0.112 3.888 27 C -0.038 4.038 28 C 0.245 3.755 29 N -0.484 5.484 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.383 0.617 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.076 0.924 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.029 0.971 47 H -0.001 1.001 48 H 0.265 0.735 49 H 0.110 0.890 50 H 0.083 0.917 51 H 0.117 0.883 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.942 -18.060 -10.231 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.056 3.944 4 H 0.095 0.905 5 O -0.382 6.382 6 C -0.073 4.073 7 H 0.060 0.940 8 C -0.146 4.146 9 C -0.157 4.157 10 C -0.143 4.143 11 C -0.091 4.091 12 N -0.207 5.207 13 C -0.103 4.103 14 C 0.258 3.742 15 O -0.455 6.455 16 N -0.328 5.328 17 C 0.140 3.860 18 C -0.576 4.576 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.567 5.567 22 Si 0.782 3.218 23 H -0.205 1.205 24 H -0.208 1.208 25 H -0.187 1.187 26 C -0.012 4.012 27 C -0.079 4.079 28 C -0.072 4.072 29 N -0.162 5.162 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.047 0.953 47 H 0.017 0.983 48 H 0.074 0.926 49 H 0.128 0.872 50 H 0.102 0.898 51 H 0.135 0.865 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.044 -18.446 -9.218 21.489 hybrid contribution 1.841 1.862 0.296 2.635 sum -4.204 -16.584 -8.922 19.295 Atomic orbital electron populations 1.21741 0.95538 1.01726 1.01706 1.22119 0.95927 0.95259 1.04387 1.21923 0.91469 0.94106 0.86884 0.90454 1.86581 1.76734 1.58420 1.16425 1.22536 0.96212 0.97011 0.91549 0.93974 1.21625 0.95294 1.01904 0.95784 1.21530 0.96240 0.99417 0.98532 1.21504 0.99501 1.00085 0.93260 1.22286 0.87635 0.99664 0.99481 1.62541 1.07017 1.50085 1.01076 1.22687 1.02717 0.88668 0.96202 1.22636 0.80258 0.91008 0.80310 1.90611 1.37532 1.71405 1.45965 1.48268 1.45520 1.12929 1.26126 1.18724 0.94646 0.77700 0.94920 1.21687 1.12445 0.92272 1.31173 0.92860 1.25727 1.00114 0.95388 0.97565 1.70030 1.42102 0.98113 1.46419 0.85630 0.79588 0.77084 0.79488 1.20534 1.20837 1.18694 1.21530 0.86343 0.99673 0.93680 1.19805 0.90143 1.01990 0.95995 1.29087 0.92984 0.92122 0.93008 1.81298 1.11782 1.11673 1.11460 0.93180 0.91929 0.93111 0.90659 0.89235 0.76735 0.90970 0.89220 0.94892 0.90065 0.91616 0.89774 0.95609 0.90555 0.85767 0.85420 0.95318 0.98323 0.92645 0.87226 0.89846 0.86505 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.81 71.98 0.71 -1.50 16 2 C -0.14 -2.12 4.90 30.59 0.15 -1.97 16 3 C 0.12 2.45 2.32 30.59 0.07 2.52 16 4 H 0.08 1.83 6.57 -2.39 -0.02 1.81 16 5 O -0.57 -13.04 12.76 -148.98 -1.90 -14.94 16 6 C 0.04 0.88 1.46 44.94 0.07 0.94 16 7 H 0.04 1.52 5.53 -2.38 -0.01 1.51 16 8 C -0.11 -2.07 4.69 30.65 0.14 -1.93 16 9 C -0.12 -2.51 6.00 30.67 0.18 -2.32 16 10 C -0.11 -2.19 6.09 30.65 0.19 -2.00 16 11 C 0.04 0.98 5.07 86.33 0.44 1.42 16 12 N -0.48 -11.11 3.75 -875.64 -3.29 -14.40 16 13 C 0.03 0.65 3.58 85.56 0.31 0.95 16 14 C 0.47 16.27 7.03 87.66 0.62 16.88 16 15 O -0.57 -25.90 11.19 -3.03 -0.03 -25.94 16 16 N -0.60 -21.05 2.46 -826.16 -2.03 -23.08 16 17 C 0.26 12.69 5.16 85.63 0.44 13.13 16 18 C -0.54 -28.94 9.39 25.60 0.24 -28.70 16 19 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 20 C 0.01 0.62 5.46 84.65 0.46 1.08 16 21 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 22 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 C 0.11 2.70 5.17 86.38 0.45 3.14 16 27 C -0.04 -0.71 6.03 28.79 0.17 -0.53 16 28 C 0.25 5.30 15.44 89.43 1.38 6.68 16 29 N -0.48 -13.22 18.54 20.02 0.37 -12.85 16 30 H 0.05 0.81 7.81 -2.39 -0.02 0.79 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 1.00 6.77 -2.38 -0.02 0.98 16 34 H 0.09 1.33 6.69 -2.39 -0.02 1.31 16 35 H 0.38 5.95 7.21 -74.05 -0.53 5.42 16 36 H 0.07 1.24 6.77 -2.39 -0.02 1.22 16 37 H 0.09 1.36 6.64 -2.39 -0.02 1.34 16 38 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.03 0.93 5.82 -2.39 -0.01 0.92 16 43 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 44 H 0.12 2.30 7.36 -2.39 -0.02 2.28 16 45 H 0.13 2.17 4.81 -2.39 -0.01 2.16 16 46 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 47 H 0.00 -0.08 7.42 -2.38 -0.02 -0.10 16 48 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.11 1.92 6.44 -2.39 -0.02 1.90 16 50 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 51 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.13 1.79 7.22 -2.39 -0.02 1.78 16 Total: -1.00 -73.97 400.84 1.84 -72.13 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.39 Total: 19.51 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.01 Total: 7.79 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -4.66 Total: -104.31 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.93 Total: -40.87 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -73.97 1.84 -72.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114187557.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.459 kcal (2) G-P(sol) polarization free energy of solvation -73.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds