Wall clock time and date at job start Tue Mar 31 2020 20:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46997 * 2 1 4 4 H 1.08998 * 109.46880 * 305.00114 * 3 2 1 5 5 O 1.42899 * 109.46999 * 65.00204 * 3 2 1 6 6 C 1.52994 * 109.47199 * 185.00174 * 3 2 1 7 7 H 1.09003 * 109.46532 * 59.70809 * 6 3 2 8 8 C 1.53041 * 109.45262 * 299.74218 * 6 3 2 9 9 C 1.53120 * 109.27658 * 180.80893 * 8 6 3 10 10 C 1.53117 * 109.16207 * 57.65457 * 9 8 6 11 11 C 1.53038 * 109.27697 * 302.34280 * 10 9 8 12 12 N 1.46847 * 109.46499 * 179.69031 * 6 3 2 13 13 C 1.46897 * 110.99800 * 305.84407 * 12 6 3 14 14 C 1.50704 * 109.46815 * 164.32959 * 13 12 6 15 15 O 1.21280 * 119.99868 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99942 * 180.02562 * 14 13 12 17 17 C 1.46508 * 120.00291 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47213 * 270.00350 * 17 16 14 19 19 H 1.08010 * 120.00039 * 359.72184 * 18 17 16 20 20 C 1.37872 * 120.00176 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99749 * 359.72179 * 20 18 17 22 22 Si 1.86796 * 120.00369 * 179.72638 * 20 18 17 23 23 H 1.48498 * 109.47439 * 89.99532 * 22 20 18 24 24 H 1.48501 * 109.47082 * 209.99864 * 22 20 18 25 25 H 1.48501 * 109.47008 * 329.99509 * 22 20 18 26 26 C 1.46500 * 120.00068 * 0.02562 * 16 14 13 27 27 C 1.53007 * 109.46738 * 269.99705 * 26 16 14 28 28 C 1.47196 * 109.46774 * 180.02562 * 27 26 16 29 29 N 7.71960 * 92.05577 * 306.86744 * 2 1 3 30 30 H 1.09003 * 109.47025 * 299.99663 * 1 2 3 31 31 H 1.08998 * 109.47199 * 60.00034 * 1 2 3 32 32 H 1.08994 * 109.47053 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47025 * 240.00337 * 2 1 3 34 34 H 1.08998 * 109.47199 * 119.99966 * 2 1 3 35 35 H 0.96697 * 113.99997 * 59.99956 * 5 3 2 36 36 H 1.08997 * 109.49961 * 300.74809 * 8 6 3 37 37 H 1.08992 * 109.50479 * 60.86836 * 8 6 3 38 38 H 1.09000 * 109.51993 * 177.55578 * 9 8 6 39 39 H 1.08998 * 109.52963 * 297.74717 * 9 8 6 40 40 H 1.08998 * 109.50391 * 62.28101 * 10 9 8 41 41 H 1.09004 * 109.50680 * 182.36602 * 10 9 8 42 42 H 1.08994 * 109.46335 * 299.16280 * 11 10 9 43 43 H 1.09002 * 109.46100 * 179.19496 * 11 10 9 44 44 H 1.08999 * 109.47031 * 44.33707 * 13 12 6 45 45 H 1.08994 * 109.47309 * 284.32573 * 13 12 6 46 46 H 1.08994 * 109.47120 * 149.99967 * 17 16 14 47 47 H 1.09004 * 109.46695 * 29.99927 * 17 16 14 48 48 H 0.96999 * 120.00275 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.47439 * 29.99846 * 26 16 14 50 50 H 1.09003 * 109.47216 * 150.00213 * 26 16 14 51 51 H 1.09006 * 109.47079 * 299.99675 * 27 26 16 52 52 H 1.08997 * 109.46785 * 59.99845 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5647 1.4445 -0.1258 7 1 3.8532 0.9525 -1.0547 8 6 4.1748 0.6931 1.0597 9 6 5.7012 0.7148 0.9405 10 6 6.1805 2.1680 0.8862 11 6 5.5123 2.8766 -0.2943 12 7 4.0534 2.8292 -0.1332 13 6 3.3828 3.6185 -1.1749 14 6 3.6071 5.0860 -0.9157 15 8 4.2608 5.4395 0.0428 16 7 3.0804 6.0056 -1.7483 17 6 3.2979 7.4323 -1.4960 18 6 2.1927 7.9616 -0.6189 19 1 1.4044 7.3023 -0.2865 20 6 2.1850 9.2886 -0.2448 21 7 3.1452 10.0912 -0.6491 22 14 0.8110 9.9464 0.8362 23 1 1.1928 9.8032 2.2641 24 1 0.5811 11.3805 0.5266 25 1 -0.4333 9.1785 0.5771 26 6 2.2893 5.5786 -2.9051 27 6 3.2114 5.3884 -4.1112 28 6 2.4165 4.9600 -5.2737 29 7 1.8069 4.6285 -6.1719 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0142 1.6543 2.0139 36 1 3.8755 1.1763 1.9897 37 1 3.8242 -0.3389 1.0559 38 1 6.1412 0.2183 1.8054 39 1 6.0030 0.1975 0.0298 40 1 5.9127 2.6745 1.8135 41 1 7.2629 2.1899 0.7590 42 1 5.7915 2.3781 -1.2224 43 1 5.8404 3.9155 -0.3273 44 1 2.3138 3.4062 -1.1599 45 1 3.7920 3.3552 -2.1502 46 1 3.3006 7.9724 -2.4428 47 1 4.2565 7.5708 -0.9960 48 1 3.1401 11.0247 -0.3856 49 1 1.7908 4.6366 -2.6767 50 1 1.5424 6.3385 -3.1350 51 1 3.7098 6.3306 -4.3397 52 1 3.9582 4.6286 -3.8813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114187560.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:24 Heat of formation + Delta-G solvation = -60.288994 kcal Electronic energy + Delta-G solvation = -31151.207958 eV Core-core repulsion = 27150.661513 eV Total energy + Delta-G solvation = -4000.546445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.24511 -38.80586 -36.96001 -36.66784 -35.13872 -33.62174 -32.96120 -32.75713 -30.90457 -30.76223 -28.44352 -26.67258 -26.02695 -24.00769 -23.71976 -22.84464 -21.90788 -20.98214 -19.65738 -18.46806 -17.59299 -16.91761 -16.39174 -16.33727 -15.85397 -15.84879 -15.41725 -15.21096 -14.72791 -14.66975 -14.30054 -14.10393 -13.91172 -13.82370 -13.40746 -13.33503 -12.98130 -12.85585 -12.59674 -12.44329 -12.38038 -12.30264 -12.04816 -11.97837 -11.82180 -11.56336 -11.37312 -11.23051 -11.20225 -11.11026 -10.95613 -10.83075 -10.79903 -10.57984 -10.52808 -10.17789 -10.12170 -9.73558 -9.62112 -8.89380 -8.41272 -8.10063 -7.74378 -6.03037 -4.06784 2.73311 2.80704 3.34716 3.37351 3.40963 3.46275 3.51797 3.87582 4.22864 4.41154 4.47720 4.49002 4.63172 4.79947 4.81283 4.88851 4.97684 4.99553 5.04562 5.14745 5.19487 5.27788 5.30423 5.33510 5.35776 5.40125 5.49257 5.52552 5.57604 5.62391 5.67099 5.72788 5.79781 5.83473 5.84580 5.86880 5.98260 6.07232 6.08960 6.09967 6.22988 6.36558 6.90980 7.14845 7.19712 7.42294 7.51562 7.56801 7.71624 7.94066 8.24274 8.35604 8.93262 9.11552 9.58783 11.05101 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008568 B = 0.003792 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.360073 B = 7382.198905 C = 8127.826080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.107 3.893 4 H 0.098 0.902 5 O -0.539 6.539 6 C 0.054 3.946 7 H 0.044 0.956 8 C -0.115 4.115 9 C -0.119 4.119 10 C -0.115 4.115 11 C 0.056 3.944 12 N -0.501 5.501 13 C 0.029 3.971 14 C 0.512 3.488 15 O -0.511 6.511 16 N -0.601 5.601 17 C 0.247 3.753 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.119 3.881 27 C -0.051 4.051 28 C 0.217 3.783 29 N -0.446 5.446 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.369 0.631 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.023 0.977 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.033 0.967 47 H 0.045 0.955 48 H 0.263 0.737 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.118 0.882 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 -21.378 -0.934 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.048 3.952 4 H 0.115 0.885 5 O -0.344 6.344 6 C -0.055 4.055 7 H 0.062 0.938 8 C -0.153 4.153 9 C -0.156 4.156 10 C -0.153 4.153 11 C -0.071 4.071 12 N -0.226 5.226 13 C -0.102 4.102 14 C 0.297 3.703 15 O -0.386 6.386 16 N -0.334 5.334 17 C 0.128 3.872 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.008 4.008 27 C -0.093 4.093 28 C -0.101 4.101 29 N -0.123 5.123 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.217 0.783 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.070 0.930 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.090 0.910 50 H 0.112 0.888 51 H 0.135 0.865 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.709 -20.851 -1.685 20.988 hybrid contribution -0.038 -0.163 0.325 0.366 sum 1.671 -21.013 -1.359 21.124 Atomic orbital electron populations 1.21700 0.95007 1.01264 1.02670 1.22282 0.97197 0.97290 1.02610 1.22078 0.91851 0.92366 0.88941 0.88457 1.86670 1.75906 1.56973 1.14863 1.22344 0.95654 0.89399 0.98087 0.93847 1.21658 0.95819 0.99127 0.98690 1.21561 0.95408 0.97267 1.01389 1.21549 0.99028 0.94846 0.99840 1.22189 0.86726 1.02217 0.95986 1.61388 1.04884 1.09256 1.47058 1.22202 1.01226 0.93467 0.93290 1.20119 0.80293 0.86780 0.83078 1.90670 1.39027 1.81198 1.27667 1.48214 1.51493 1.09201 1.24495 1.19304 0.98271 0.72804 0.96789 1.21437 1.09339 0.94491 1.31083 0.92335 1.24899 0.96151 0.96807 0.96096 1.69921 1.32466 1.05550 1.45556 0.86531 0.82226 0.77831 0.81044 1.20553 1.21284 1.19915 1.21263 0.93253 1.01732 0.84526 1.19926 0.97183 1.04190 0.87957 1.29087 0.93777 0.92936 0.94261 1.81164 1.09789 1.09839 1.11550 0.91852 0.92749 0.93020 0.91381 0.91345 0.78319 0.90738 0.91482 0.91939 0.92568 0.90646 0.91811 0.95934 0.88961 0.87958 0.93009 0.94925 0.93649 0.92779 0.90998 0.88777 0.86450 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 37.16 0.36 -0.85 16 2 C -0.16 -1.20 5.12 -26.73 -0.14 -1.33 16 3 C 0.11 1.08 2.31 -26.73 -0.06 1.02 16 4 H 0.10 1.05 5.99 -51.93 -0.31 0.74 16 5 O -0.54 -6.71 12.70 -35.23 -0.45 -7.16 16 6 C 0.05 0.55 1.75 -67.72 -0.12 0.43 16 7 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 8 C -0.12 -1.00 4.71 -26.65 -0.13 -1.13 16 9 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16 10 C -0.11 -1.27 6.09 -26.65 -0.16 -1.43 16 11 C 0.06 0.73 5.11 -3.83 -0.02 0.71 16 12 N -0.50 -6.73 4.00 -228.13 -0.91 -7.64 16 13 C 0.03 0.40 3.81 -4.98 -0.02 0.38 16 14 C 0.51 9.61 7.36 -10.99 -0.08 9.53 16 15 O -0.51 -11.97 14.39 5.56 0.08 -11.89 16 16 N -0.60 -11.15 2.46 -175.05 -0.43 -11.58 16 17 C 0.25 5.92 5.16 -5.19 -0.03 5.89 16 18 C -0.52 -14.28 9.39 -34.44 -0.32 -14.60 16 19 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -25.87 13.29 55.43 0.74 -25.14 16 22 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.12 1.62 5.17 -4.04 -0.02 1.60 16 27 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 28 C 0.22 2.64 15.43 -20.79 -0.32 2.31 16 29 N -0.45 -6.55 18.53 42.12 0.78 -5.77 16 30 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.46 6.73 -51.93 -0.35 0.11 16 35 H 0.37 3.57 7.31 45.56 0.33 3.90 16 36 H 0.07 0.70 6.74 -51.93 -0.35 0.35 16 37 H 0.07 0.46 6.60 -51.93 -0.34 0.12 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 1.46 6.31 -51.93 -0.33 1.13 16 44 H 0.10 1.35 4.66 -51.93 -0.24 1.11 16 45 H 0.05 0.58 7.10 -51.93 -0.37 0.21 16 46 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 50 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 51 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 52 H 0.10 0.90 7.22 -51.93 -0.37 0.52 16 LS Contribution 408.94 15.07 6.16 6.16 Total: -1.00 -33.83 408.94 -8.61 -42.44 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.07 Total: 1.63 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.49 Total: 2.25 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.17 Total: -50.12 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.37 Total: -19.05 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.83 -8.61 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114187560.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.852 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds