Wall clock time and date at job start Tue Mar 31 2020 20:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46997 * 2 1 4 4 H 1.08998 * 109.46880 * 305.00114 * 3 2 1 5 5 O 1.42899 * 109.46999 * 65.00204 * 3 2 1 6 6 C 1.52994 * 109.47199 * 185.00174 * 3 2 1 7 7 H 1.09003 * 109.46532 * 59.70809 * 6 3 2 8 8 C 1.53041 * 109.45262 * 299.74218 * 6 3 2 9 9 C 1.53120 * 109.27658 * 180.80893 * 8 6 3 10 10 C 1.53117 * 109.16207 * 57.65457 * 9 8 6 11 11 C 1.53038 * 109.27697 * 302.34280 * 10 9 8 12 12 N 1.46847 * 109.46499 * 179.69031 * 6 3 2 13 13 C 1.46897 * 110.99800 * 305.84407 * 12 6 3 14 14 C 1.50704 * 109.46815 * 164.32959 * 13 12 6 15 15 O 1.21280 * 119.99868 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99942 * 180.02562 * 14 13 12 17 17 C 1.46508 * 120.00291 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47213 * 270.00350 * 17 16 14 19 19 H 1.08010 * 120.00039 * 359.72184 * 18 17 16 20 20 C 1.37872 * 120.00176 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99749 * 359.72179 * 20 18 17 22 22 Si 1.86796 * 120.00369 * 179.72638 * 20 18 17 23 23 H 1.48498 * 109.47439 * 89.99532 * 22 20 18 24 24 H 1.48501 * 109.47082 * 209.99864 * 22 20 18 25 25 H 1.48501 * 109.47008 * 329.99509 * 22 20 18 26 26 C 1.46500 * 120.00068 * 0.02562 * 16 14 13 27 27 C 1.53007 * 109.46738 * 269.99705 * 26 16 14 28 28 C 1.47196 * 109.46774 * 180.02562 * 27 26 16 29 29 N 7.71960 * 92.05577 * 306.86744 * 2 1 3 30 30 H 1.09003 * 109.47025 * 299.99663 * 1 2 3 31 31 H 1.08998 * 109.47199 * 60.00034 * 1 2 3 32 32 H 1.08994 * 109.47053 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47025 * 240.00337 * 2 1 3 34 34 H 1.08998 * 109.47199 * 119.99966 * 2 1 3 35 35 H 0.96697 * 113.99997 * 59.99956 * 5 3 2 36 36 H 1.08997 * 109.49961 * 300.74809 * 8 6 3 37 37 H 1.08992 * 109.50479 * 60.86836 * 8 6 3 38 38 H 1.09000 * 109.51993 * 177.55578 * 9 8 6 39 39 H 1.08998 * 109.52963 * 297.74717 * 9 8 6 40 40 H 1.08998 * 109.50391 * 62.28101 * 10 9 8 41 41 H 1.09004 * 109.50680 * 182.36602 * 10 9 8 42 42 H 1.08994 * 109.46335 * 299.16280 * 11 10 9 43 43 H 1.09002 * 109.46100 * 179.19496 * 11 10 9 44 44 H 1.08999 * 109.47031 * 44.33707 * 13 12 6 45 45 H 1.08994 * 109.47309 * 284.32573 * 13 12 6 46 46 H 1.08994 * 109.47120 * 149.99967 * 17 16 14 47 47 H 1.09004 * 109.46695 * 29.99927 * 17 16 14 48 48 H 0.96999 * 120.00275 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.47439 * 29.99846 * 26 16 14 50 50 H 1.09003 * 109.47216 * 150.00213 * 26 16 14 51 51 H 1.09006 * 109.47079 * 299.99675 * 27 26 16 52 52 H 1.08997 * 109.46785 * 59.99845 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5647 1.4445 -0.1258 7 1 3.8532 0.9525 -1.0547 8 6 4.1748 0.6931 1.0597 9 6 5.7012 0.7148 0.9405 10 6 6.1805 2.1680 0.8862 11 6 5.5123 2.8766 -0.2943 12 7 4.0534 2.8292 -0.1332 13 6 3.3828 3.6185 -1.1749 14 6 3.6071 5.0860 -0.9157 15 8 4.2608 5.4395 0.0428 16 7 3.0804 6.0056 -1.7483 17 6 3.2979 7.4323 -1.4960 18 6 2.1927 7.9616 -0.6189 19 1 1.4044 7.3023 -0.2865 20 6 2.1850 9.2886 -0.2448 21 7 3.1452 10.0912 -0.6491 22 14 0.8110 9.9464 0.8362 23 1 1.1928 9.8032 2.2641 24 1 0.5811 11.3805 0.5266 25 1 -0.4333 9.1785 0.5771 26 6 2.2893 5.5786 -2.9051 27 6 3.2114 5.3884 -4.1112 28 6 2.4165 4.9600 -5.2737 29 7 1.8069 4.6285 -6.1719 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0142 1.6543 2.0139 36 1 3.8755 1.1763 1.9897 37 1 3.8242 -0.3389 1.0559 38 1 6.1412 0.2183 1.8054 39 1 6.0030 0.1975 0.0298 40 1 5.9127 2.6745 1.8135 41 1 7.2629 2.1899 0.7590 42 1 5.7915 2.3781 -1.2224 43 1 5.8404 3.9155 -0.3273 44 1 2.3138 3.4062 -1.1599 45 1 3.7920 3.3552 -2.1502 46 1 3.3006 7.9724 -2.4428 47 1 4.2565 7.5708 -0.9960 48 1 3.1401 11.0247 -0.3856 49 1 1.7908 4.6366 -2.6767 50 1 1.5424 6.3385 -3.1350 51 1 3.7098 6.3306 -4.3397 52 1 3.9582 4.6286 -3.8813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114187560.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:23 Heat of formation + Delta-G solvation = -83.735215 kcal Electronic energy + Delta-G solvation = -31152.224662 eV Core-core repulsion = 27150.661513 eV Total energy + Delta-G solvation = -4001.563149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29010 -40.05535 -38.02757 -37.60369 -36.58538 -34.94709 -34.38207 -33.69819 -32.14625 -31.64625 -29.93460 -28.02864 -26.96634 -25.29856 -24.93248 -24.01484 -22.95441 -21.77368 -20.46390 -19.88525 -18.79502 -18.32611 -18.02390 -17.39955 -17.09093 -16.62973 -16.53842 -16.36860 -16.02474 -15.73869 -15.56349 -15.22752 -15.03810 -14.67254 -14.52015 -14.27811 -14.20511 -13.91839 -13.85643 -13.61580 -13.53700 -13.26541 -13.18680 -13.01688 -12.97211 -12.76653 -12.69350 -12.63083 -12.52294 -12.18948 -12.14564 -11.96268 -11.83684 -11.80306 -11.63405 -11.59701 -11.33445 -10.97710 -10.57427 -10.55044 -10.35815 -9.41941 -9.04368 -8.16207 -6.27825 1.39293 1.42225 1.50773 1.69471 1.82872 1.97542 2.26740 2.44811 2.89977 3.14151 3.18402 3.60173 3.76103 3.80374 3.92813 3.97964 4.05228 4.10673 4.15054 4.18043 4.30161 4.33079 4.35061 4.44067 4.53772 4.58966 4.65434 4.69683 4.80849 4.83423 4.90385 4.98294 5.00796 5.03830 5.07499 5.09179 5.14826 5.17138 5.23873 5.36113 5.36432 5.40314 5.46425 5.53810 5.64721 5.91474 6.12431 6.16578 6.31316 6.58856 6.80150 6.87816 6.97839 7.38150 7.64205 8.90270 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008568 B = 0.003792 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.360073 B = 7382.198905 C = 8127.826080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.105 3.895 4 H 0.089 0.911 5 O -0.567 6.567 6 C 0.057 3.943 7 H 0.062 0.938 8 C -0.113 4.113 9 C -0.112 4.112 10 C -0.114 4.114 11 C 0.059 3.941 12 N -0.527 5.527 13 C 0.042 3.958 14 C 0.504 3.496 15 O -0.568 6.568 16 N -0.602 5.602 17 C 0.263 3.737 18 C -0.537 4.537 19 H 0.049 0.951 20 C 0.013 3.987 21 N -0.926 5.926 22 Si 0.955 3.045 23 H -0.284 1.284 24 H -0.277 1.277 25 H -0.266 1.266 26 C 0.115 3.885 27 C -0.037 4.037 28 C 0.246 3.754 29 N -0.486 5.486 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.378 0.622 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.112 0.888 45 H 0.088 0.912 46 H 0.033 0.967 47 H 0.002 0.998 48 H 0.265 0.735 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.121 0.879 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -24.348 -1.716 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.046 3.954 4 H 0.107 0.893 5 O -0.374 6.374 6 C -0.051 4.051 7 H 0.080 0.920 8 C -0.151 4.151 9 C -0.150 4.150 10 C -0.152 4.152 11 C -0.069 4.069 12 N -0.252 5.252 13 C -0.089 4.089 14 C 0.293 3.707 15 O -0.446 6.446 16 N -0.334 5.334 17 C 0.142 3.858 18 C -0.576 4.576 19 H 0.067 0.933 20 C -0.186 4.186 21 N -0.566 5.566 22 Si 0.780 3.220 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.190 1.190 26 C -0.010 4.010 27 C -0.078 4.078 28 C -0.072 4.072 29 N -0.164 5.164 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.227 0.773 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.106 0.894 46 H 0.051 0.949 47 H 0.021 0.979 48 H 0.074 0.926 49 H 0.118 0.882 50 H 0.101 0.899 51 H 0.139 0.861 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.118 -23.860 -2.503 24.017 hybrid contribution 0.161 0.774 0.602 0.994 sum 1.279 -23.085 -1.901 23.199 Atomic orbital electron populations 1.21701 0.95601 1.01789 1.01638 1.22208 0.96556 0.95661 1.04009 1.22172 0.91830 0.93659 0.87750 0.89330 1.86631 1.76445 1.58221 1.16116 1.22429 0.95580 0.87556 0.99511 0.92010 1.21685 0.95695 1.00231 0.97477 1.21533 0.95450 0.95323 1.02689 1.21528 0.99554 0.96310 0.97772 1.22091 0.86807 1.00311 0.97669 1.61298 1.05098 1.11371 1.47470 1.22096 1.02113 0.89468 0.95182 1.21110 0.78835 0.88896 0.81895 1.90644 1.41449 1.82439 1.30109 1.48096 1.52024 1.07157 1.26144 1.18742 0.95182 0.76222 0.95650 1.21743 1.09746 0.94648 1.31443 0.93285 1.25678 0.98331 0.97256 0.97368 1.70018 1.34004 1.05848 1.46718 0.85607 0.79800 0.77733 0.78832 1.21024 1.20174 1.18988 1.21467 0.93176 1.02537 0.83841 1.19820 0.96644 1.05430 0.85905 1.29072 0.92744 0.91638 0.93714 1.81207 1.10926 1.11459 1.12844 0.93381 0.93324 0.91705 0.89716 0.90063 0.77298 0.91996 0.88770 0.90712 0.91091 0.93418 0.90901 0.93850 0.92903 0.86997 0.89443 0.94858 0.97940 0.92615 0.88225 0.89919 0.86123 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.81 71.98 0.71 -1.41 16 2 C -0.15 -1.77 5.12 30.60 0.16 -1.61 16 3 C 0.11 1.87 2.31 30.59 0.07 1.94 16 4 H 0.09 1.70 5.99 -2.39 -0.01 1.69 16 5 O -0.57 -13.63 12.70 -148.98 -1.89 -15.52 16 6 C 0.06 1.00 1.75 44.94 0.08 1.08 16 7 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 8 C -0.11 -1.64 4.71 30.65 0.14 -1.50 16 9 C -0.11 -1.66 6.00 30.67 0.18 -1.47 16 10 C -0.11 -2.43 6.09 30.65 0.19 -2.24 16 11 C 0.06 1.47 5.11 86.33 0.44 1.91 16 12 N -0.53 -13.50 4.00 -875.66 -3.50 -17.01 16 13 C 0.04 1.09 3.81 85.56 0.33 1.41 16 14 C 0.50 19.18 7.36 87.66 0.64 19.83 16 15 O -0.57 -27.99 14.39 -3.03 -0.04 -28.04 16 16 N -0.60 -22.52 2.46 -826.14 -2.03 -24.55 16 17 C 0.26 13.08 5.16 85.63 0.44 13.53 16 18 C -0.54 -30.02 9.39 25.60 0.24 -29.78 16 19 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 20 C 0.01 0.72 5.46 84.65 0.46 1.18 16 21 N -0.93 -54.76 13.29 21.45 0.28 -54.48 16 22 Si 0.95 45.10 29.54 68.60 2.03 47.12 16 23 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.11 2.96 5.17 86.38 0.45 3.41 16 27 C -0.04 -0.69 6.03 28.79 0.17 -0.52 16 28 C 0.25 5.39 15.43 89.45 1.38 6.77 16 29 N -0.49 -13.44 18.53 19.99 0.37 -13.07 16 30 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.79 6.73 -2.39 -0.02 0.77 16 35 H 0.38 7.05 7.31 -74.06 -0.54 6.51 16 36 H 0.06 1.07 6.74 -2.39 -0.02 1.05 16 37 H 0.09 0.88 6.60 -2.39 -0.02 0.87 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 1.74 6.31 -2.39 -0.02 1.73 16 44 H 0.11 2.71 4.66 -2.39 -0.01 2.70 16 45 H 0.09 1.63 7.10 -2.39 -0.02 1.61 16 46 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 47 H 0.00 0.14 7.42 -2.39 -0.02 0.13 16 48 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 49 H 0.10 2.04 6.44 -2.39 -0.02 2.03 16 50 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 51 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 52 H 0.13 1.81 7.22 -2.39 -0.02 1.79 16 Total: -1.00 -77.66 408.94 1.68 -75.99 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.38 Total: 17.04 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.08 Total: 12.52 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -4.88 Total: -109.11 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.94 Total: -43.56 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -77.66 1.68 -75.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114187560.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.750 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds