Wall clock time and date at job start Tue Mar 31 2020 20:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47029 * 2 1 4 4 H 1.08998 * 109.47204 * 54.99765 * 3 2 1 5 5 O 1.42897 * 109.46635 * 294.99711 * 3 2 1 6 6 C 1.53001 * 109.46801 * 175.00236 * 3 2 1 7 7 H 1.09006 * 109.45994 * 302.28024 * 6 3 2 8 8 C 1.53032 * 109.46334 * 62.24988 * 6 3 2 9 9 C 1.53121 * 109.27541 * 179.19438 * 8 6 3 10 10 C 1.53115 * 109.16333 * 302.34503 * 9 8 6 11 11 C 1.53038 * 109.27776 * 57.65283 * 10 9 8 12 12 N 1.46846 * 109.45772 * 182.30486 * 6 3 2 13 13 C 1.46896 * 111.00083 * 54.14461 * 12 6 3 14 14 C 1.50698 * 109.47302 * 64.46162 * 13 12 6 15 15 O 1.21281 * 119.99977 * 354.89674 * 14 13 12 16 16 N 1.34779 * 120.00199 * 174.89543 * 14 13 12 17 17 C 1.46499 * 120.00326 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47089 * 90.00086 * 17 16 14 19 19 H 1.07997 * 119.99651 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00338 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99833 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47046 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.46628 * 299.99260 * 22 20 18 25 25 H 1.48499 * 109.47425 * 59.99324 * 22 20 18 26 26 C 1.46498 * 119.99770 * 0.02562 * 16 14 13 27 27 C 1.53004 * 109.46950 * 269.99585 * 26 16 14 28 28 C 1.47201 * 109.47192 * 180.02562 * 27 26 16 29 29 N 8.93936 * 92.96004 * 23.44675 * 2 1 3 30 30 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47360 * 300.00177 * 1 2 3 32 32 H 1.09003 * 109.47252 * 59.99760 * 1 2 3 33 33 H 1.08996 * 109.47199 * 239.99697 * 2 1 3 34 34 H 1.09000 * 109.46942 * 119.99553 * 2 1 3 35 35 H 0.96699 * 114.00699 * 300.00170 * 5 3 2 36 36 H 1.08996 * 109.50445 * 299.13551 * 8 6 3 37 37 H 1.09005 * 109.50282 * 59.21672 * 8 6 3 38 38 H 1.09005 * 109.52641 * 62.25516 * 9 8 6 39 39 H 1.09004 * 109.52169 * 182.37723 * 9 8 6 40 40 H 1.09001 * 109.50793 * 177.59344 * 10 9 8 41 41 H 1.08998 * 109.50593 * 297.67675 * 10 9 8 42 42 H 1.08996 * 109.46530 * 180.80372 * 11 10 9 43 43 H 1.09002 * 109.45995 * 60.83851 * 11 10 9 44 44 H 1.09000 * 109.47138 * 304.46067 * 13 12 6 45 45 H 1.09002 * 109.47333 * 184.46158 * 13 12 6 46 46 H 1.09005 * 109.47275 * 330.00455 * 17 16 14 47 47 H 1.08995 * 109.47415 * 210.00271 * 17 16 14 48 48 H 0.96996 * 120.00431 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.47541 * 29.99725 * 26 16 14 50 50 H 1.09000 * 109.47207 * 150.00153 * 26 16 14 51 51 H 1.08999 * 109.46937 * 299.99910 * 27 26 16 52 52 H 1.09000 * 109.46702 * 60.00259 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0813 -1.2211 6 6 3.5648 1.4443 0.1257 7 1 3.8547 0.9213 1.0371 8 6 4.1771 0.7363 -1.0850 9 6 5.7034 0.7582 -0.9649 10 6 6.1785 2.2100 -0.8601 11 6 5.5082 2.8754 0.3440 12 7 4.0495 2.8294 0.1811 13 6 3.3766 3.5802 1.2495 14 6 3.7376 2.9850 2.5860 15 8 4.4064 1.9746 2.6391 16 7 3.3173 3.5753 3.7224 17 6 3.6678 2.9964 5.0216 18 6 4.9720 3.5826 5.4974 19 1 5.4879 4.3137 4.8927 20 6 5.5067 3.1858 6.7048 21 7 4.8781 2.2959 7.4415 22 14 7.1229 3.9130 7.2948 23 1 7.4783 3.3261 8.6118 24 1 8.1921 3.6062 6.3109 25 1 6.9830 5.3851 7.4309 26 6 2.5089 4.7954 3.6582 27 6 3.4291 6.0178 3.6660 28 6 2.6169 7.2438 3.6022 29 7 1.9916 8.1903 3.5522 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0141 1.6542 -2.0139 36 1 3.8293 -0.2962 -1.1170 37 1 3.8759 1.2503 -1.9979 38 1 6.0066 0.2104 -0.0726 39 1 6.1449 0.2922 -1.8459 40 1 7.2607 2.2304 -0.7314 41 1 5.9100 2.7474 -1.7696 42 1 5.8334 3.9134 0.4131 43 1 5.7888 2.3457 1.2544 44 1 2.2972 3.5261 1.1073 45 1 3.6954 4.6221 1.2177 46 1 3.7700 1.9157 4.9222 47 1 2.8831 3.2222 5.7436 48 1 5.2543 2.0164 8.2907 49 1 1.9175 4.7917 2.7427 50 1 1.8435 4.8362 4.5205 51 1 4.0205 6.0215 4.5816 52 1 4.0946 5.9771 2.8037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114187562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:27 Heat of formation + Delta-G solvation = -62.537825 kcal Electronic energy + Delta-G solvation = -31663.501194 eV Core-core repulsion = 27662.857233 eV Total energy + Delta-G solvation = -4000.643962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.50042 -38.65216 -36.93025 -36.51284 -35.23703 -33.48759 -32.84672 -32.77644 -30.79269 -30.71399 -28.44828 -26.68998 -25.94653 -23.95029 -23.54275 -22.85547 -21.88372 -20.87344 -19.63649 -18.54132 -17.58109 -16.65303 -16.61861 -16.30256 -15.85527 -15.75739 -15.26537 -15.10214 -14.70403 -14.61937 -14.51138 -14.17365 -13.88290 -13.47953 -13.40727 -13.21467 -12.83977 -12.66858 -12.55996 -12.38564 -12.34744 -12.20185 -12.02362 -11.85822 -11.72393 -11.56741 -11.32465 -11.16910 -11.08038 -10.98071 -10.83684 -10.78821 -10.65563 -10.57722 -10.47304 -10.23010 -10.04473 -9.76992 -9.63908 -9.58883 -8.52517 -7.89563 -7.73741 -6.14293 -4.19732 2.82034 2.93600 3.20252 3.24893 3.30735 3.33075 3.68458 3.92699 4.26730 4.37641 4.49867 4.65876 4.80427 4.94741 4.96624 4.99053 5.06892 5.14605 5.18111 5.20081 5.24332 5.27725 5.41944 5.49895 5.55393 5.60410 5.64240 5.68503 5.75696 5.82108 5.86663 5.91630 5.92516 5.96297 6.07073 6.10980 6.16460 6.18084 6.19158 6.24581 6.36589 6.54951 6.86697 7.15146 7.24339 7.31980 7.37963 7.68871 7.72160 7.80550 8.10752 8.20593 8.76066 8.90838 9.46071 10.93741 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.004019 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.232471 B = 6964.944201 C = 7813.090625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.111 3.889 4 H 0.095 0.905 5 O -0.551 6.551 6 C 0.036 3.964 7 H 0.088 0.912 8 C -0.112 4.112 9 C -0.119 4.119 10 C -0.111 4.111 11 C 0.035 3.965 12 N -0.499 5.499 13 C 0.025 3.975 14 C 0.476 3.524 15 O -0.532 6.532 16 N -0.595 5.595 17 C 0.244 3.756 18 C -0.529 4.529 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.892 5.892 22 Si 0.894 3.106 23 H -0.287 1.287 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.122 3.878 27 C -0.052 4.052 28 C 0.219 3.781 29 N -0.451 5.451 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.368 0.632 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.044 0.956 47 H 0.033 0.967 48 H 0.264 0.736 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.130 0.870 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -2.479 -16.481 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.052 3.948 4 H 0.113 0.887 5 O -0.356 6.356 6 C -0.073 4.073 7 H 0.105 0.895 8 C -0.149 4.149 9 C -0.156 4.156 10 C -0.149 4.149 11 C -0.092 4.092 12 N -0.221 5.221 13 C -0.107 4.107 14 C 0.262 3.738 15 O -0.410 6.410 16 N -0.327 5.327 17 C 0.125 3.875 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.531 5.531 22 Si 0.722 3.278 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.005 4.005 27 C -0.094 4.094 28 C -0.099 4.099 29 N -0.129 5.129 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.215 0.785 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.105 0.895 51 H 0.148 0.852 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.894 -1.100 -16.373 17.124 hybrid contribution 1.775 -0.626 1.088 2.174 sum -3.119 -1.726 -15.285 15.695 Atomic orbital electron populations 1.21691 0.95235 1.01248 1.02268 1.22252 0.96901 0.97440 1.02850 1.22044 0.92621 0.92382 0.87787 0.88696 1.86554 1.76422 1.57325 1.15271 1.22585 0.94541 0.90127 1.00006 0.89477 1.21608 0.95865 0.99410 0.98047 1.21526 0.95436 0.97095 1.01564 1.21517 0.99169 0.95600 0.98623 1.22355 0.87047 1.00825 0.99018 1.62349 1.05362 1.12857 1.41556 1.22478 1.01438 0.99294 0.87486 1.21776 0.80409 0.85121 0.86512 1.90582 1.38369 1.25211 1.86819 1.48400 1.51094 1.24556 1.08643 1.19344 0.95731 0.95419 0.77036 1.21350 1.06568 1.24768 1.04060 0.92290 1.24914 0.97403 0.94942 0.96585 1.69906 1.39134 1.30932 1.13089 0.86626 0.83946 0.79270 0.78004 1.21233 1.20195 1.20161 1.21278 0.92568 0.83392 1.03244 1.19971 0.96852 0.85327 1.07223 1.29222 0.93666 0.94506 0.92514 1.81164 1.10098 1.11830 1.09769 0.93034 0.92777 0.92206 0.91555 0.90948 0.78517 0.91736 0.91625 0.91860 0.92359 0.91949 0.91803 0.91557 0.90897 0.87882 0.88454 0.93802 0.94933 0.92594 0.90778 0.89466 0.85239 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.81 37.16 0.36 -1.04 16 2 C -0.16 -1.58 5.17 -26.73 -0.14 -1.72 16 3 C 0.11 1.27 2.31 -26.73 -0.06 1.21 16 4 H 0.10 1.22 6.09 -51.93 -0.32 0.90 16 5 O -0.55 -6.12 12.71 -35.23 -0.45 -6.57 16 6 C 0.04 0.45 1.34 -67.72 -0.09 0.36 16 7 H 0.09 1.41 5.69 -51.93 -0.30 1.11 16 8 C -0.11 -1.16 4.71 -26.65 -0.13 -1.29 16 9 C -0.12 -1.31 6.00 -26.61 -0.16 -1.47 16 10 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 11 C 0.04 0.49 5.00 -3.83 -0.02 0.47 16 12 N -0.50 -6.59 4.60 -228.13 -1.05 -7.64 16 13 C 0.02 0.33 3.92 -4.98 -0.02 0.31 16 14 C 0.48 8.16 7.07 -10.99 -0.08 8.08 16 15 O -0.53 -11.10 11.22 5.56 0.06 -11.04 16 16 N -0.60 -10.37 2.46 -175.06 -0.43 -10.80 16 17 C 0.24 5.57 5.20 -5.19 -0.03 5.55 16 18 C -0.53 -13.21 8.93 -34.44 -0.31 -13.51 16 19 H 0.06 1.43 7.42 -52.49 -0.39 1.04 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -24.88 13.29 55.43 0.74 -24.15 16 22 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 C 0.12 1.59 5.14 -4.04 -0.02 1.57 16 27 C -0.05 -0.64 5.98 -29.52 -0.18 -0.82 16 28 C 0.22 2.91 15.43 -20.78 -0.32 2.59 16 29 N -0.45 -7.07 18.53 42.13 0.78 -6.29 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.56 7.82 -51.93 -0.41 0.16 16 33 H 0.07 0.58 6.77 -51.93 -0.35 0.23 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.37 3.12 7.25 45.56 0.33 3.45 16 36 H 0.06 0.61 6.65 -51.93 -0.35 0.26 16 37 H 0.07 0.62 6.71 -51.93 -0.35 0.27 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 43 H 0.07 1.27 5.67 -51.93 -0.29 0.98 16 44 H 0.10 1.27 5.42 -51.93 -0.28 0.99 16 45 H 0.10 1.14 6.91 -51.93 -0.36 0.78 16 46 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 47 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.07 0.78 6.58 -51.93 -0.34 0.44 16 50 H 0.09 1.13 7.89 -51.93 -0.41 0.72 16 51 H 0.13 1.82 7.27 -51.93 -0.38 1.44 16 52 H 0.10 1.12 7.13 -51.93 -0.37 0.75 16 LS Contribution 401.24 15.07 6.05 6.05 Total: -1.00 -30.43 401.24 -8.63 -39.06 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.87 Total: 5.52 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.44 Total: 0.43 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.04 Total: -48.88 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.39 Total: -17.61 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.43 -8.63 -39.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114187562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.478 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds