Wall clock time and date at job start Tue Mar 31 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47029 * 2 1 4 4 H 1.08998 * 109.47204 * 54.99765 * 3 2 1 5 5 O 1.42897 * 109.46635 * 294.99711 * 3 2 1 6 6 C 1.53001 * 109.46801 * 175.00236 * 3 2 1 7 7 H 1.09006 * 109.45994 * 302.28024 * 6 3 2 8 8 C 1.53032 * 109.46334 * 62.24988 * 6 3 2 9 9 C 1.53121 * 109.27541 * 179.19438 * 8 6 3 10 10 C 1.53115 * 109.16333 * 302.34503 * 9 8 6 11 11 C 1.53038 * 109.27776 * 57.65283 * 10 9 8 12 12 N 1.46846 * 109.45772 * 182.30486 * 6 3 2 13 13 C 1.46896 * 111.00083 * 54.14461 * 12 6 3 14 14 C 1.50698 * 109.47302 * 64.46162 * 13 12 6 15 15 O 1.21281 * 119.99977 * 354.89674 * 14 13 12 16 16 N 1.34779 * 120.00199 * 174.89543 * 14 13 12 17 17 C 1.46499 * 120.00326 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47089 * 90.00086 * 17 16 14 19 19 H 1.07997 * 119.99651 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00338 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99833 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47046 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.46628 * 299.99260 * 22 20 18 25 25 H 1.48499 * 109.47425 * 59.99324 * 22 20 18 26 26 C 1.46498 * 119.99770 * 0.02562 * 16 14 13 27 27 C 1.53004 * 109.46950 * 269.99585 * 26 16 14 28 28 C 1.47201 * 109.47192 * 180.02562 * 27 26 16 29 29 N 8.93936 * 92.96004 * 23.44675 * 2 1 3 30 30 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47360 * 300.00177 * 1 2 3 32 32 H 1.09003 * 109.47252 * 59.99760 * 1 2 3 33 33 H 1.08996 * 109.47199 * 239.99697 * 2 1 3 34 34 H 1.09000 * 109.46942 * 119.99553 * 2 1 3 35 35 H 0.96699 * 114.00699 * 300.00170 * 5 3 2 36 36 H 1.08996 * 109.50445 * 299.13551 * 8 6 3 37 37 H 1.09005 * 109.50282 * 59.21672 * 8 6 3 38 38 H 1.09005 * 109.52641 * 62.25516 * 9 8 6 39 39 H 1.09004 * 109.52169 * 182.37723 * 9 8 6 40 40 H 1.09001 * 109.50793 * 177.59344 * 10 9 8 41 41 H 1.08998 * 109.50593 * 297.67675 * 10 9 8 42 42 H 1.08996 * 109.46530 * 180.80372 * 11 10 9 43 43 H 1.09002 * 109.45995 * 60.83851 * 11 10 9 44 44 H 1.09000 * 109.47138 * 304.46067 * 13 12 6 45 45 H 1.09002 * 109.47333 * 184.46158 * 13 12 6 46 46 H 1.09005 * 109.47275 * 330.00455 * 17 16 14 47 47 H 1.08995 * 109.47415 * 210.00271 * 17 16 14 48 48 H 0.96996 * 120.00431 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.47541 * 29.99725 * 26 16 14 50 50 H 1.09000 * 109.47207 * 150.00153 * 26 16 14 51 51 H 1.08999 * 109.46937 * 299.99910 * 27 26 16 52 52 H 1.09000 * 109.46702 * 60.00259 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0813 -1.2211 6 6 3.5648 1.4443 0.1257 7 1 3.8547 0.9213 1.0371 8 6 4.1771 0.7363 -1.0850 9 6 5.7034 0.7582 -0.9649 10 6 6.1785 2.2100 -0.8601 11 6 5.5082 2.8754 0.3440 12 7 4.0495 2.8294 0.1811 13 6 3.3766 3.5802 1.2495 14 6 3.7376 2.9850 2.5860 15 8 4.4064 1.9746 2.6391 16 7 3.3173 3.5753 3.7224 17 6 3.6678 2.9964 5.0216 18 6 4.9720 3.5826 5.4974 19 1 5.4879 4.3137 4.8927 20 6 5.5067 3.1858 6.7048 21 7 4.8781 2.2959 7.4415 22 14 7.1229 3.9130 7.2948 23 1 7.4783 3.3261 8.6118 24 1 8.1921 3.6062 6.3109 25 1 6.9830 5.3851 7.4309 26 6 2.5089 4.7954 3.6582 27 6 3.4291 6.0178 3.6660 28 6 2.6169 7.2438 3.6022 29 7 1.9916 8.1903 3.5522 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0141 1.6542 -2.0139 36 1 3.8293 -0.2962 -1.1170 37 1 3.8759 1.2503 -1.9979 38 1 6.0066 0.2104 -0.0726 39 1 6.1449 0.2922 -1.8459 40 1 7.2607 2.2304 -0.7314 41 1 5.9100 2.7474 -1.7696 42 1 5.8334 3.9134 0.4131 43 1 5.7888 2.3457 1.2544 44 1 2.2972 3.5261 1.1073 45 1 3.6954 4.6221 1.2177 46 1 3.7700 1.9157 4.9222 47 1 2.8831 3.2222 5.7436 48 1 5.2543 2.0164 8.2907 49 1 1.9175 4.7917 2.7427 50 1 1.8435 4.8362 4.5205 51 1 4.0205 6.0215 4.5816 52 1 4.0946 5.9771 2.8037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114187562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:26 Heat of formation + Delta-G solvation = -82.992182 kcal Electronic energy + Delta-G solvation = -31664.388162 eV Core-core repulsion = 27662.857233 eV Total energy + Delta-G solvation = -4001.530929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67063 -39.83592 -38.05678 -37.54204 -36.61031 -34.90786 -34.31831 -33.68145 -32.10851 -31.64848 -29.96361 -28.04793 -26.94170 -25.17327 -24.93573 -24.03845 -23.00212 -21.79647 -20.70305 -19.82889 -18.98732 -18.10201 -17.83245 -17.65106 -16.96220 -16.80049 -16.48398 -16.24015 -15.96357 -15.86928 -15.56681 -15.52282 -14.98407 -14.69567 -14.50404 -14.18561 -14.08445 -13.94356 -13.75560 -13.63586 -13.52545 -13.22704 -13.14279 -13.04708 -12.91264 -12.78244 -12.70738 -12.60543 -12.50608 -12.18506 -12.05127 -11.85071 -11.80110 -11.77864 -11.59935 -11.51876 -11.37237 -11.09551 -10.94777 -10.56421 -10.49546 -9.44881 -8.96444 -8.15703 -6.27624 1.41778 1.44075 1.50133 1.66624 1.85002 1.91747 2.30056 2.46622 2.89934 3.14828 3.16679 3.62067 3.75717 3.80419 3.89470 4.00722 4.09644 4.10993 4.17640 4.21736 4.26706 4.32838 4.44326 4.56150 4.60222 4.61936 4.72884 4.79414 4.82678 4.85890 4.93245 4.95801 5.03213 5.07421 5.11889 5.13875 5.15096 5.19185 5.24069 5.29692 5.34068 5.40440 5.41741 5.56100 5.65869 5.88736 6.06878 6.13557 6.17285 6.60836 6.75570 6.84438 6.98479 7.36594 7.52999 8.91313 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.004019 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.232471 B = 6964.944201 C = 7813.090625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.153 4.153 3 C 0.121 3.879 4 H 0.079 0.921 5 O -0.554 6.554 6 C 0.037 3.963 7 H 0.047 0.953 8 C -0.107 4.107 9 C -0.119 4.119 10 C -0.107 4.107 11 C 0.035 3.965 12 N -0.489 5.489 13 C 0.033 3.967 14 C 0.472 3.528 15 O -0.574 6.574 16 N -0.597 5.597 17 C 0.261 3.739 18 C -0.527 4.527 19 H 0.067 0.933 20 C 0.010 3.990 21 N -0.931 5.931 22 Si 0.954 3.046 23 H -0.289 1.289 24 H -0.278 1.278 25 H -0.259 1.259 26 C 0.117 3.883 27 C -0.041 4.041 28 C 0.247 3.753 29 N -0.487 5.487 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.381 0.619 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.120 0.880 45 H 0.122 0.878 46 H -0.003 1.003 47 H 0.022 0.978 48 H 0.263 0.737 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.115 0.885 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -1.131 -19.258 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C 0.061 3.939 4 H 0.097 0.903 5 O -0.361 6.361 6 C -0.072 4.072 7 H 0.065 0.935 8 C -0.144 4.144 9 C -0.157 4.157 10 C -0.144 4.144 11 C -0.093 4.093 12 N -0.211 5.211 13 C -0.099 4.099 14 C 0.260 3.740 15 O -0.454 6.454 16 N -0.328 5.328 17 C 0.139 3.861 18 C -0.566 4.566 19 H 0.085 0.915 20 C -0.189 4.189 21 N -0.571 5.571 22 Si 0.780 3.220 23 H -0.215 1.215 24 H -0.204 1.204 25 H -0.184 1.184 26 C -0.007 4.007 27 C -0.082 4.082 28 C -0.071 4.071 29 N -0.165 5.165 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.231 0.769 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.015 0.985 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.127 0.873 50 H 0.105 0.895 51 H 0.133 0.867 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.990 0.282 -19.186 19.826 hybrid contribution 1.782 -1.104 1.917 2.841 sum -3.208 -0.822 -17.269 17.583 Atomic orbital electron populations 1.21669 0.94596 1.01863 1.02021 1.22215 0.97388 0.96609 1.02901 1.21826 0.91420 0.92926 0.87735 0.90310 1.86532 1.76480 1.57560 1.15513 1.22554 0.95644 0.89593 0.99390 0.93525 1.21612 0.95194 1.00069 0.97575 1.21536 0.96134 0.96700 1.01319 1.21501 0.99214 0.95744 0.97988 1.22324 0.87695 1.00853 0.98399 1.62468 1.04954 1.13114 1.40542 1.22608 1.02450 1.00147 0.84662 1.22604 0.79343 0.84422 0.87588 1.90596 1.40161 1.27132 1.87492 1.48291 1.51746 1.25962 1.06841 1.18766 0.94919 0.92903 0.79496 1.21708 1.07054 1.24111 1.03724 0.91511 1.25733 1.00575 0.95441 0.97126 1.70039 1.40855 1.32667 1.13536 0.85664 0.79931 0.79350 0.77070 1.21510 1.20384 1.18372 1.21519 0.92365 0.81719 1.05133 1.19861 0.96503 0.84312 1.07539 1.29133 0.92694 0.93965 0.91275 1.81206 1.11244 1.12964 1.11123 0.92050 0.93792 0.91611 0.89653 0.92749 0.76933 0.90613 0.89558 0.94531 0.90076 0.91590 0.90207 0.90870 0.95043 0.86264 0.85970 0.98510 0.95954 0.92834 0.87296 0.89471 0.86735 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.81 71.98 0.71 -1.85 16 2 C -0.15 -2.93 5.17 30.60 0.16 -2.78 16 3 C 0.12 2.60 2.31 30.60 0.07 2.67 16 4 H 0.08 1.96 6.09 -2.39 -0.01 1.94 16 5 O -0.55 -10.66 12.71 -148.98 -1.89 -12.55 16 6 C 0.04 0.91 1.34 44.94 0.06 0.97 16 7 H 0.05 1.59 5.69 -2.38 -0.01 1.57 16 8 C -0.11 -2.02 4.71 30.65 0.14 -1.88 16 9 C -0.12 -2.48 6.00 30.67 0.18 -2.30 16 10 C -0.11 -2.29 6.09 30.65 0.19 -2.10 16 11 C 0.04 0.95 5.00 86.33 0.43 1.38 16 12 N -0.49 -12.18 4.60 -875.65 -4.03 -16.21 16 13 C 0.03 0.81 3.92 85.56 0.34 1.15 16 14 C 0.47 16.35 7.07 87.66 0.62 16.97 16 15 O -0.57 -25.22 11.22 -3.03 -0.03 -25.26 16 16 N -0.60 -20.94 2.46 -826.15 -2.03 -22.97 16 17 C 0.26 12.41 5.20 85.63 0.45 12.86 16 18 C -0.53 -26.84 8.93 25.60 0.23 -26.61 16 19 H 0.07 3.22 7.42 -2.91 -0.02 3.20 16 20 C 0.01 0.54 5.46 84.65 0.46 1.00 16 21 N -0.93 -53.69 13.29 21.45 0.28 -53.41 16 22 Si 0.95 42.32 29.54 68.60 2.03 44.34 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 C 0.12 2.88 5.14 86.38 0.44 3.33 16 27 C -0.04 -0.92 5.98 28.79 0.17 -0.74 16 28 C 0.25 6.03 15.43 89.45 1.38 7.41 16 29 N -0.49 -14.43 18.53 20.00 0.37 -14.05 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 1.09 7.82 -2.39 -0.02 1.07 16 33 H 0.08 1.30 6.77 -2.39 -0.02 1.28 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.38 5.04 7.25 -74.06 -0.54 4.50 16 36 H 0.08 1.26 6.65 -2.39 -0.02 1.25 16 37 H 0.09 1.31 6.71 -2.38 -0.02 1.29 16 38 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 43 H 0.03 1.14 5.67 -2.39 -0.01 1.12 16 44 H 0.12 2.63 5.42 -2.39 -0.01 2.62 16 45 H 0.12 2.44 6.91 -2.39 -0.02 2.42 16 46 H 0.00 -0.18 7.42 -2.38 -0.02 -0.20 16 47 H 0.02 1.10 7.89 -2.39 -0.02 1.08 16 48 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 49 H 0.11 1.96 6.58 -2.39 -0.02 1.95 16 50 H 0.09 2.17 7.89 -2.39 -0.02 2.15 16 51 H 0.11 3.05 7.27 -2.39 -0.02 3.03 16 52 H 0.13 2.31 7.13 -2.39 -0.02 2.29 16 Total: -1.00 -69.37 401.24 1.12 -68.25 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.39 Total: 22.38 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.03 Total: 9.48 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -5.40 Total: -106.64 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.93 Total: -37.81 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -69.37 1.12 -68.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114187562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.742 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds