Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47009 * 2 1 4 4 H 1.08994 * 109.46812 * 305.70390 * 3 2 1 5 5 O 1.42897 * 109.46838 * 65.70600 * 3 2 1 6 6 C 1.53000 * 109.46806 * 185.70417 * 3 2 1 7 7 H 1.09003 * 109.45036 * 174.58020 * 6 3 2 8 8 C 1.53025 * 109.46684 * 294.56136 * 6 3 2 9 9 C 1.53123 * 109.28285 * 179.19819 * 8 6 3 10 10 C 1.53116 * 109.15698 * 302.34354 * 9 8 6 11 11 C 1.53037 * 109.27890 * 57.65368 * 10 9 8 12 12 N 1.46846 * 109.52451 * 300.81834 * 11 10 9 13 13 C 1.46900 * 111.00504 * 185.83903 * 12 11 10 14 14 C 1.50701 * 109.46864 * 73.08522 * 13 12 11 15 15 O 1.21281 * 120.00356 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99699 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99708 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46816 * 90.00138 * 17 16 14 19 19 H 1.08003 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00039 * 179.97438 * 18 17 16 21 21 N 1.31523 * 120.00237 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00191 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47142 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.46676 * 299.99787 * 22 20 18 25 25 H 1.48496 * 109.47199 * 59.99668 * 22 20 18 26 26 C 1.46495 * 120.00137 * 0.02562 * 16 14 13 27 27 C 1.52998 * 109.46788 * 269.99772 * 26 16 14 28 28 C 1.47207 * 109.47047 * 179.97438 * 27 26 16 29 29 N 6.69698 * 70.92933 * 306.79989 * 2 1 3 30 30 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47118 * 300.00366 * 1 2 3 32 32 H 1.09002 * 109.46799 * 60.00035 * 1 2 3 33 33 H 1.08992 * 109.47141 * 240.00299 * 2 1 3 34 34 H 1.09000 * 109.47445 * 119.99599 * 2 1 3 35 35 H 0.96699 * 114.00283 * 60.00421 * 5 3 2 36 36 H 1.09000 * 109.50699 * 59.25129 * 8 6 3 37 37 H 1.09012 * 109.53752 * 299.15624 * 8 6 3 38 38 H 1.08994 * 109.52482 * 182.43960 * 9 8 6 39 39 H 1.08996 * 109.51753 * 62.24441 * 9 8 6 40 40 H 1.08998 * 109.50849 * 297.71374 * 10 9 8 41 41 H 1.08998 * 109.53966 * 177.61065 * 10 9 8 42 42 H 1.08997 * 109.46360 * 180.80479 * 11 10 9 43 43 H 1.08997 * 109.46602 * 60.83558 * 11 10 9 44 44 H 1.09003 * 109.47155 * 313.08717 * 13 12 11 45 45 H 1.08997 * 109.47459 * 193.08415 * 13 12 11 46 46 H 1.09001 * 109.47435 * 330.00186 * 17 16 14 47 47 H 1.09000 * 109.47111 * 209.99980 * 17 16 14 48 48 H 0.97000 * 120.00108 * 180.02562 * 21 20 18 49 49 H 1.09005 * 109.47393 * 29.99832 * 26 16 14 50 50 H 1.09002 * 109.47466 * 150.00026 * 26 16 14 51 51 H 1.08995 * 109.47422 * 299.99629 * 27 26 16 52 52 H 1.09004 * 109.47575 * 60.00245 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5957 1.9850 -0.8345 5 8 1.6761 2.0764 1.2280 6 6 3.5633 1.4449 -0.1434 7 1 3.9172 2.4713 -0.2401 8 6 4.1930 0.8028 1.0947 9 6 5.7161 0.7892 0.9379 10 6 6.0829 0.0299 -0.3401 11 6 5.3984 0.6944 -1.5367 12 7 3.9433 0.6817 -1.3391 13 6 3.2458 1.1863 -2.5294 14 6 3.3136 0.1550 -3.6261 15 8 3.8861 -0.8970 -3.4349 16 7 2.7379 0.4017 -4.8196 17 6 2.8043 -0.6007 -5.8859 18 6 1.6145 -1.5202 -5.7857 19 1 0.8819 -1.3724 -5.0060 20 6 1.4605 -2.5494 -6.6901 21 7 2.3518 -2.7285 -7.6406 22 14 -0.0146 -3.6887 -6.5663 23 1 0.0520 -4.7041 -7.6479 24 1 -0.0050 -4.3693 -5.2465 25 1 -1.2638 -2.8982 -6.7065 26 6 2.0469 1.6725 -5.0508 27 6 0.5749 1.5314 -4.6580 28 6 -0.1194 2.8085 -4.8898 29 7 -0.6581 3.7915 -5.0682 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0375 1.6460 2.0149 36 1 3.8288 -0.2191 1.1998 37 1 3.9236 1.3780 1.9806 38 1 6.1664 0.2937 1.7979 39 1 6.0846 1.8129 0.8719 40 1 5.7485 -1.0042 -0.2578 41 1 7.1636 0.0528 -0.4803 42 1 5.6460 0.1476 -2.4465 43 1 5.7437 1.7243 -1.6269 44 1 3.7220 2.1070 -2.8665 45 1 2.2032 1.3859 -2.2823 46 1 3.7214 -1.1807 -5.7829 47 1 2.7971 -0.1014 -6.8548 48 1 2.2433 -3.4524 -8.2770 49 1 2.5106 2.4533 -4.4479 50 1 2.1175 1.9379 -6.1057 51 1 0.1112 0.7507 -5.2610 52 1 0.5041 1.2660 -3.6031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114187564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = -61.713683 kcal Electronic energy + Delta-G solvation = -31630.521460 eV Core-core repulsion = 27629.913236 eV Total energy + Delta-G solvation = -4000.608224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.35590 -38.85512 -37.01650 -36.67103 -35.17963 -33.84727 -32.82664 -32.56804 -30.87552 -30.73450 -28.53039 -26.70303 -26.02442 -23.92663 -23.56593 -22.81976 -22.16884 -21.24802 -19.32712 -18.55052 -17.58466 -16.95465 -16.70415 -16.26904 -15.91280 -15.83185 -15.29539 -14.94290 -14.69518 -14.63559 -14.41806 -14.16777 -13.85680 -13.62903 -13.61808 -13.18052 -13.01681 -12.87017 -12.77666 -12.40810 -12.38070 -12.11789 -12.03589 -11.96760 -11.76929 -11.56194 -11.44137 -11.27318 -11.20870 -11.02033 -10.91417 -10.81638 -10.67787 -10.60104 -10.45136 -10.26064 -10.16914 -9.83425 -9.67058 -9.01057 -8.47404 -8.19180 -7.83111 -6.09302 -4.14273 2.82528 2.92415 3.28695 3.30692 3.34713 3.38686 3.45526 3.90521 4.26784 4.31211 4.41628 4.48169 4.59732 4.76069 4.89859 4.94700 5.01193 5.08791 5.16931 5.20652 5.24297 5.26732 5.30290 5.33971 5.42209 5.50610 5.53651 5.56480 5.62113 5.69348 5.74971 5.79627 5.84079 5.87467 5.93406 6.03547 6.15242 6.15877 6.18557 6.25843 6.33731 6.44220 6.84268 7.06246 7.08656 7.37426 7.43993 7.48794 7.67644 7.86280 8.16095 8.27877 8.84374 9.02145 9.51465 10.98752 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.004062 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.000198 B = 6892.145077 C = 7692.662393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 C 0.108 3.892 4 H 0.097 0.903 5 O -0.561 6.561 6 C 0.055 3.945 7 H 0.045 0.955 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.115 4.115 11 C 0.058 3.942 12 N -0.504 5.504 13 C 0.024 3.976 14 C 0.510 3.490 15 O -0.511 6.511 16 N -0.601 5.601 17 C 0.247 3.753 18 C -0.527 4.527 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.287 1.287 24 H -0.276 1.276 25 H -0.277 1.277 26 C 0.123 3.877 27 C -0.054 4.054 28 C 0.218 3.782 29 N -0.451 5.451 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.371 0.629 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.025 0.975 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.264 0.736 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.132 0.868 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 8.780 15.912 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.190 4.190 3 C 0.049 3.951 4 H 0.114 0.886 5 O -0.366 6.366 6 C -0.053 4.053 7 H 0.063 0.937 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.152 4.152 11 C -0.070 4.070 12 N -0.230 5.230 13 C -0.107 4.107 14 C 0.295 3.705 15 O -0.385 6.385 16 N -0.334 5.334 17 C 0.128 3.872 18 C -0.566 4.566 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.213 1.213 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.004 4.004 27 C -0.095 4.095 28 C -0.100 4.100 29 N -0.129 5.129 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.219 0.781 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.106 0.894 51 H 0.150 0.850 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.877 9.454 15.246 18.169 hybrid contribution -0.197 -0.593 0.159 0.645 sum 2.680 8.860 15.405 17.972 Atomic orbital electron populations 1.21730 0.95746 1.01527 1.01686 1.22200 0.95991 0.96374 1.04402 1.22083 0.92131 0.93972 0.86931 0.88556 1.86584 1.76748 1.57524 1.15743 1.22303 0.95994 0.95505 0.91547 0.93711 1.21664 0.95874 1.01850 0.96051 1.21550 0.95527 1.00280 0.98240 1.21548 0.99326 1.00694 0.93665 1.22163 0.86156 0.98529 1.00121 1.61523 1.07220 1.53356 1.00946 1.22269 1.00829 0.96339 0.91307 1.20113 0.79839 0.87910 0.82629 1.90685 1.42405 1.25674 1.79747 1.48245 1.53119 1.17549 1.14459 1.19332 0.98594 0.85789 0.83491 1.21372 1.08104 1.13397 1.13733 0.92202 1.24908 0.96481 0.97243 0.95213 1.69912 1.34885 1.31803 1.16571 0.86635 0.82771 0.80669 0.77821 1.21295 1.20135 1.20222 1.21254 0.89331 0.86977 1.02822 1.20013 0.96039 0.88384 1.05100 1.29243 0.93441 0.94562 0.92743 1.81144 1.09789 1.12375 1.09563 0.92767 0.92770 0.92963 0.88733 0.91813 0.78108 0.90421 0.91652 0.91894 0.92520 0.90645 0.91745 0.89060 0.95660 0.92390 0.88260 0.93702 0.94909 0.92642 0.91186 0.89448 0.85048 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.26 16 2 C -0.15 -1.67 4.96 -26.73 -0.13 -1.81 16 3 C 0.11 1.10 2.31 -26.73 -0.06 1.04 16 4 H 0.10 1.03 6.29 -51.93 -0.33 0.70 16 5 O -0.56 -5.58 12.80 -35.23 -0.45 -6.03 16 6 C 0.06 0.57 1.91 -67.73 -0.13 0.44 16 7 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 8 C -0.12 -1.02 4.69 -26.65 -0.12 -1.14 16 9 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16 10 C -0.11 -1.22 6.09 -26.65 -0.16 -1.38 16 11 C 0.06 0.72 5.11 -3.83 -0.02 0.70 16 12 N -0.50 -6.30 3.13 -228.13 -0.71 -7.01 16 13 C 0.02 0.30 3.36 -4.98 -0.02 0.28 16 14 C 0.51 8.92 7.36 -10.98 -0.08 8.84 16 15 O -0.51 -11.23 14.53 5.56 0.08 -11.15 16 16 N -0.60 -10.54 2.46 -175.06 -0.43 -10.97 16 17 C 0.25 5.66 5.20 -5.19 -0.03 5.64 16 18 C -0.53 -13.23 8.93 -34.44 -0.31 -13.54 16 19 H 0.06 1.45 7.42 -52.48 -0.39 1.06 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 22 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.12 1.59 5.21 -4.05 -0.02 1.57 16 27 C -0.05 -0.66 6.03 -29.52 -0.18 -0.84 16 28 C 0.22 2.88 15.43 -20.79 -0.32 2.56 16 29 N -0.45 -7.02 18.53 42.12 0.78 -6.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.30 6.85 -51.93 -0.36 0.95 16 34 H 0.06 0.65 6.84 -51.93 -0.36 0.29 16 35 H 0.37 2.57 7.20 45.56 0.33 2.90 16 36 H 0.08 0.74 6.68 -51.93 -0.35 0.39 16 37 H 0.06 0.45 6.76 -51.92 -0.35 0.10 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.39 6.46 -51.93 -0.34 1.05 16 43 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 45 H 0.10 1.12 4.37 -51.93 -0.23 0.89 16 46 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 47 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 50 H 0.09 1.13 7.89 -51.93 -0.41 0.72 16 51 H 0.13 1.84 7.27 -51.93 -0.38 1.46 16 52 H 0.10 1.10 7.22 -51.93 -0.37 0.72 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -31.18 405.08 -8.34 -39.53 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.95 Total: 2.98 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.48 Total: 1.51 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.37 Total: -48.48 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.37 Total: -17.18 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.18 -8.34 -39.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114187564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.187 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds