Wall clock time and date at job start Tue Mar 31 2020 20:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47009 * 2 1 4 4 H 1.08994 * 109.46812 * 305.70390 * 3 2 1 5 5 O 1.42897 * 109.46838 * 65.70600 * 3 2 1 6 6 C 1.53000 * 109.46806 * 185.70417 * 3 2 1 7 7 H 1.09003 * 109.45036 * 174.58020 * 6 3 2 8 8 C 1.53025 * 109.46684 * 294.56136 * 6 3 2 9 9 C 1.53123 * 109.28285 * 179.19819 * 8 6 3 10 10 C 1.53116 * 109.15698 * 302.34354 * 9 8 6 11 11 C 1.53037 * 109.27890 * 57.65368 * 10 9 8 12 12 N 1.46846 * 109.52451 * 300.81834 * 11 10 9 13 13 C 1.46900 * 111.00504 * 185.83903 * 12 11 10 14 14 C 1.50701 * 109.46864 * 73.08522 * 13 12 11 15 15 O 1.21281 * 120.00356 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99699 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99708 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46816 * 90.00138 * 17 16 14 19 19 H 1.08003 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00039 * 179.97438 * 18 17 16 21 21 N 1.31523 * 120.00237 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00191 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47142 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.46676 * 299.99787 * 22 20 18 25 25 H 1.48496 * 109.47199 * 59.99668 * 22 20 18 26 26 C 1.46495 * 120.00137 * 0.02562 * 16 14 13 27 27 C 1.52998 * 109.46788 * 269.99772 * 26 16 14 28 28 C 1.47207 * 109.47047 * 179.97438 * 27 26 16 29 29 N 6.69698 * 70.92933 * 306.79989 * 2 1 3 30 30 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47118 * 300.00366 * 1 2 3 32 32 H 1.09002 * 109.46799 * 60.00035 * 1 2 3 33 33 H 1.08992 * 109.47141 * 240.00299 * 2 1 3 34 34 H 1.09000 * 109.47445 * 119.99599 * 2 1 3 35 35 H 0.96699 * 114.00283 * 60.00421 * 5 3 2 36 36 H 1.09000 * 109.50699 * 59.25129 * 8 6 3 37 37 H 1.09012 * 109.53752 * 299.15624 * 8 6 3 38 38 H 1.08994 * 109.52482 * 182.43960 * 9 8 6 39 39 H 1.08996 * 109.51753 * 62.24441 * 9 8 6 40 40 H 1.08998 * 109.50849 * 297.71374 * 10 9 8 41 41 H 1.08998 * 109.53966 * 177.61065 * 10 9 8 42 42 H 1.08997 * 109.46360 * 180.80479 * 11 10 9 43 43 H 1.08997 * 109.46602 * 60.83558 * 11 10 9 44 44 H 1.09003 * 109.47155 * 313.08717 * 13 12 11 45 45 H 1.08997 * 109.47459 * 193.08415 * 13 12 11 46 46 H 1.09001 * 109.47435 * 330.00186 * 17 16 14 47 47 H 1.09000 * 109.47111 * 209.99980 * 17 16 14 48 48 H 0.97000 * 120.00108 * 180.02562 * 21 20 18 49 49 H 1.09005 * 109.47393 * 29.99832 * 26 16 14 50 50 H 1.09002 * 109.47466 * 150.00026 * 26 16 14 51 51 H 1.08995 * 109.47422 * 299.99629 * 27 26 16 52 52 H 1.09004 * 109.47575 * 60.00245 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5957 1.9850 -0.8345 5 8 1.6761 2.0764 1.2280 6 6 3.5633 1.4449 -0.1434 7 1 3.9172 2.4713 -0.2401 8 6 4.1930 0.8028 1.0947 9 6 5.7161 0.7892 0.9379 10 6 6.0829 0.0299 -0.3401 11 6 5.3984 0.6944 -1.5367 12 7 3.9433 0.6817 -1.3391 13 6 3.2458 1.1863 -2.5294 14 6 3.3136 0.1550 -3.6261 15 8 3.8861 -0.8970 -3.4349 16 7 2.7379 0.4017 -4.8196 17 6 2.8043 -0.6007 -5.8859 18 6 1.6145 -1.5202 -5.7857 19 1 0.8819 -1.3724 -5.0060 20 6 1.4605 -2.5494 -6.6901 21 7 2.3518 -2.7285 -7.6406 22 14 -0.0146 -3.6887 -6.5663 23 1 0.0520 -4.7041 -7.6479 24 1 -0.0050 -4.3693 -5.2465 25 1 -1.2638 -2.8982 -6.7065 26 6 2.0469 1.6725 -5.0508 27 6 0.5749 1.5314 -4.6580 28 6 -0.1194 2.8085 -4.8898 29 7 -0.6581 3.7915 -5.0682 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0375 1.6460 2.0149 36 1 3.8288 -0.2191 1.1998 37 1 3.9236 1.3780 1.9806 38 1 6.1664 0.2937 1.7979 39 1 6.0846 1.8129 0.8719 40 1 5.7485 -1.0042 -0.2578 41 1 7.1636 0.0528 -0.4803 42 1 5.6460 0.1476 -2.4465 43 1 5.7437 1.7243 -1.6269 44 1 3.7220 2.1070 -2.8665 45 1 2.2032 1.3859 -2.2823 46 1 3.7214 -1.1807 -5.7829 47 1 2.7971 -0.1014 -6.8548 48 1 2.2433 -3.4524 -8.2770 49 1 2.5106 2.4533 -4.4479 50 1 2.1175 1.9379 -6.1057 51 1 0.1112 0.7507 -5.2610 52 1 0.5041 1.2660 -3.6031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114187564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:29 Heat of formation + Delta-G solvation = -81.909496 kcal Electronic energy + Delta-G solvation = -31631.397217 eV Core-core repulsion = 27629.913236 eV Total energy + Delta-G solvation = -4001.483980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37467 -40.07395 -38.03935 -37.67843 -36.59053 -34.93676 -34.51327 -33.44441 -32.09178 -31.68235 -29.97882 -28.07248 -26.92346 -25.14125 -24.92195 -23.84667 -23.33175 -22.07768 -20.15584 -19.86648 -18.97244 -18.13019 -17.91489 -17.60948 -17.07356 -16.91705 -16.46067 -16.10438 -15.99493 -15.58095 -15.54189 -15.32263 -14.95293 -14.72393 -14.58091 -14.25672 -14.11510 -13.93939 -13.89588 -13.72037 -13.52077 -13.39928 -13.15798 -13.06755 -12.88259 -12.79313 -12.72480 -12.57110 -12.47522 -12.27815 -12.14826 -12.00490 -11.79697 -11.73403 -11.57069 -11.49850 -11.28853 -11.07088 -10.63304 -10.52065 -10.41163 -9.41763 -9.13854 -8.11527 -6.22775 1.44655 1.47625 1.53230 1.70098 1.84887 2.00567 2.22268 2.47759 2.87611 3.18259 3.20745 3.55020 3.68223 3.76834 3.85935 3.98314 4.04920 4.07262 4.17509 4.23133 4.29539 4.33407 4.40747 4.42228 4.49436 4.59377 4.69801 4.72335 4.79225 4.86173 4.91045 4.94242 4.98491 5.05787 5.06870 5.11891 5.17106 5.23551 5.30076 5.35661 5.39072 5.41842 5.53166 5.55607 5.69103 5.92108 6.05091 6.18404 6.20945 6.60650 6.82688 6.87117 6.89491 7.42636 7.63302 8.95556 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.004062 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.000198 B = 6892.145077 C = 7692.662393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.116 3.884 4 H 0.096 0.904 5 O -0.566 6.566 6 C 0.059 3.941 7 H 0.052 0.948 8 C -0.116 4.116 9 C -0.113 4.113 10 C -0.113 4.113 11 C 0.060 3.940 12 N -0.521 5.521 13 C 0.035 3.965 14 C 0.506 3.494 15 O -0.565 6.565 16 N -0.602 5.602 17 C 0.262 3.738 18 C -0.526 4.526 19 H 0.067 0.933 20 C 0.010 3.990 21 N -0.931 5.931 22 Si 0.953 3.047 23 H -0.290 1.290 24 H -0.279 1.279 25 H -0.259 1.259 26 C 0.118 3.882 27 C -0.043 4.043 28 C 0.246 3.754 29 N -0.486 5.486 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.385 0.615 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.083 0.917 45 H 0.120 0.880 46 H -0.002 1.002 47 H 0.025 0.975 48 H 0.262 0.738 49 H 0.108 0.892 50 H 0.088 0.912 51 H 0.116 0.884 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 10.751 18.328 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C 0.057 3.943 4 H 0.114 0.886 5 O -0.373 6.373 6 C -0.049 4.049 7 H 0.070 0.930 8 C -0.153 4.153 9 C -0.150 4.150 10 C -0.151 4.151 11 C -0.068 4.068 12 N -0.247 5.247 13 C -0.095 4.095 14 C 0.294 3.706 15 O -0.442 6.442 16 N -0.334 5.334 17 C 0.141 3.859 18 C -0.565 4.565 19 H 0.086 0.914 20 C -0.188 4.188 21 N -0.572 5.572 22 Si 0.779 3.221 23 H -0.216 1.216 24 H -0.204 1.204 25 H -0.184 1.184 26 C -0.007 4.007 27 C -0.085 4.085 28 C -0.071 4.071 29 N -0.164 5.164 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.138 0.862 46 H 0.016 0.984 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.126 0.874 50 H 0.107 0.893 51 H 0.134 0.866 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.804 11.472 17.690 21.161 hybrid contribution 0.189 -1.216 -0.562 1.352 sum 1.993 10.257 17.128 20.063 Atomic orbital electron populations 1.21721 0.95557 1.01274 1.02019 1.22106 0.96069 0.96955 1.03281 1.21937 0.91929 0.93109 0.87349 0.88621 1.86568 1.76959 1.57653 1.16114 1.22342 0.96131 0.95536 0.90873 0.93024 1.21693 0.95676 1.01621 0.96325 1.21520 0.95687 1.00522 0.97283 1.21522 0.99629 0.99583 0.94326 1.22075 0.86590 0.98846 0.99295 1.61448 1.07113 1.54571 1.01575 1.22186 1.02445 0.95037 0.89867 1.21002 0.78263 0.88198 0.83153 1.90664 1.44516 1.28316 1.80731 1.48117 1.53701 1.18068 1.13482 1.18769 0.95794 0.86475 0.84867 1.21730 1.08365 1.13261 1.13100 0.91445 1.25715 0.98995 0.98966 0.95173 1.70044 1.36836 1.32634 1.17647 0.85686 0.80371 0.78828 0.77256 1.21563 1.20427 1.18382 1.21513 0.89714 0.85461 1.03973 1.19897 0.95009 0.87400 1.06149 1.29124 0.92516 0.93973 0.91521 1.81188 1.10897 1.13495 1.10866 0.93372 0.91982 0.93018 0.91680 0.91171 0.76505 0.91432 0.89024 0.90571 0.91522 0.92900 0.90931 0.92755 0.94201 0.89897 0.86217 0.98394 0.95716 0.92882 0.87433 0.89326 0.86559 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.81 71.98 0.71 -2.22 16 2 C -0.15 -2.96 4.96 30.60 0.15 -2.81 16 3 C 0.12 2.03 2.31 30.60 0.07 2.10 16 4 H 0.10 1.69 6.29 -2.39 -0.02 1.68 16 5 O -0.57 -9.17 12.80 -148.98 -1.91 -11.08 16 6 C 0.06 1.05 1.91 44.93 0.09 1.13 16 7 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 8 C -0.12 -1.68 4.69 30.64 0.14 -1.54 16 9 C -0.11 -1.68 6.00 30.67 0.18 -1.49 16 10 C -0.11 -2.33 6.09 30.65 0.19 -2.14 16 11 C 0.06 1.45 5.11 86.33 0.44 1.89 16 12 N -0.52 -12.35 3.13 -875.66 -2.74 -15.09 16 13 C 0.04 0.84 3.36 85.56 0.29 1.12 16 14 C 0.51 17.79 7.36 87.66 0.65 18.43 16 15 O -0.56 -25.99 14.53 -3.03 -0.04 -26.04 16 16 N -0.60 -21.10 2.46 -826.15 -2.03 -23.13 16 17 C 0.26 12.49 5.20 85.64 0.45 12.93 16 18 C -0.53 -26.83 8.93 25.60 0.23 -26.60 16 19 H 0.07 3.26 7.42 -2.91 -0.02 3.24 16 20 C 0.01 0.55 5.46 84.65 0.46 1.01 16 21 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 22 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 C 0.12 2.85 5.21 86.38 0.45 3.30 16 27 C -0.04 -0.96 6.03 28.79 0.17 -0.79 16 28 C 0.25 5.91 15.43 89.46 1.38 7.29 16 29 N -0.49 -14.17 18.53 20.00 0.37 -13.80 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.12 7.84 -2.39 -0.02 1.10 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.75 6.85 -2.39 -0.02 1.73 16 34 H 0.07 1.31 6.84 -2.39 -0.02 1.29 16 35 H 0.38 3.83 7.20 -74.06 -0.53 3.29 16 36 H 0.07 1.15 6.68 -2.39 -0.02 1.13 16 37 H 0.09 0.88 6.76 -2.38 -0.02 0.86 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.73 6.46 -2.39 -0.02 1.71 16 43 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 1.58 7.29 -2.39 -0.02 1.57 16 45 H 0.12 2.34 4.37 -2.39 -0.01 2.33 16 46 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 47 H 0.02 1.21 7.89 -2.39 -0.02 1.19 16 48 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 49 H 0.11 1.84 6.44 -2.38 -0.02 1.82 16 50 H 0.09 2.15 7.89 -2.39 -0.02 2.13 16 51 H 0.12 3.07 7.27 -2.39 -0.02 3.06 16 52 H 0.13 2.27 7.22 -2.39 -0.02 2.25 16 Total: -1.00 -70.87 405.08 2.40 -68.48 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.39 Total: 18.01 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 6.04 Total: 11.61 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -4.12 Total: -105.52 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.95 Total: -37.11 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -70.87 2.40 -68.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114187564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.430 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds