Wall clock time and date at job start Tue Mar 31 2020 20:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46822 * 2 1 4 4 H 1.09002 * 109.46824 * 55.00360 * 3 2 1 5 5 O 1.42899 * 109.47421 * 295.00303 * 3 2 1 6 6 C 1.53000 * 109.46846 * 174.99943 * 3 2 1 7 7 C 1.52997 * 109.47060 * 185.00166 * 6 3 2 8 8 N 1.46500 * 109.47473 * 180.02562 * 7 6 3 9 9 C 1.34777 * 120.00376 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99593 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46783 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.46609 * 179.97438 * 12 11 9 14 14 C 1.39864 * 126.03492 * 90.02888 * 13 12 11 15 15 C 1.50702 * 125.90316 * 359.95165 * 14 13 12 16 16 N 1.30839 * 108.20047 * 179.97438 * 14 13 12 17 17 N 1.40088 * 108.20509 * 359.97438 * 16 14 13 18 18 C 1.46495 * 126.03597 * 180.02562 * 17 16 14 19 19 C 1.50694 * 109.47607 * 90.02061 * 18 17 16 20 20 H 1.07997 * 120.00057 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00318 * 179.97438 * 19 18 17 22 22 N 1.31523 * 119.99862 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00240 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47101 * 60.00225 * 23 21 19 25 25 H 1.48498 * 109.47044 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46988 * 300.00237 * 23 21 19 27 27 C 1.34946 * 107.92313 * 359.75847 * 17 16 14 28 28 C 1.50697 * 126.12684 * 180.24086 * 27 17 16 29 29 H 1.08998 * 109.47289 * 59.99980 * 1 2 3 30 30 H 1.09002 * 109.46611 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47264 * 299.99443 * 1 2 3 32 32 H 1.09004 * 109.47264 * 240.00557 * 2 1 3 33 33 H 1.08998 * 109.47289 * 120.00020 * 2 1 3 34 34 H 0.96702 * 113.99557 * 300.00370 * 5 3 2 35 35 H 1.09002 * 109.47398 * 305.00335 * 6 3 2 36 36 H 1.09001 * 109.47194 * 65.00515 * 6 3 2 37 37 H 1.09002 * 109.47153 * 300.00319 * 7 6 3 38 38 H 1.08998 * 109.47533 * 59.99948 * 7 6 3 39 39 H 0.97004 * 119.99396 * 0.02562 * 8 7 6 40 40 H 1.09002 * 109.46793 * 299.99519 * 11 9 8 41 41 H 1.08992 * 109.46831 * 59.99969 * 11 9 8 42 42 H 1.08992 * 109.47457 * 299.99923 * 12 11 9 43 43 H 1.09001 * 109.46962 * 59.99990 * 12 11 9 44 44 H 1.09002 * 109.46825 * 90.00040 * 15 14 13 45 45 H 1.09002 * 109.47150 * 210.00325 * 15 14 13 46 46 H 1.08998 * 109.47094 * 330.00477 * 15 14 13 47 47 H 1.09004 * 109.46707 * 210.02711 * 18 17 16 48 48 H 1.09006 * 109.47326 * 330.01625 * 18 17 16 49 49 H 0.96998 * 119.99746 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.47076 * 270.17775 * 28 27 17 51 51 H 1.09004 * 109.47092 * 30.17641 * 28 27 17 52 52 H 1.09005 * 109.47285 * 150.17809 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6618 2.0815 -1.2210 6 6 3.5647 1.4444 0.1257 7 6 4.0644 2.8851 0.2512 8 7 5.5245 2.8870 0.3710 9 6 6.1890 4.0530 0.4944 10 8 5.5782 5.1007 0.5067 11 6 7.6911 4.0549 0.6170 12 6 8.1906 5.4956 0.7426 13 6 9.6926 5.4975 0.8658 14 6 10.6049 5.5651 -0.1921 15 6 10.2561 5.6480 -1.6559 16 7 11.8136 5.5436 0.3085 17 7 11.7083 5.4620 1.7030 18 6 12.8248 5.4145 2.6502 19 6 13.1979 6.8165 3.0577 20 1 12.6572 7.6587 2.6521 21 6 14.2290 7.0240 3.9493 22 7 14.8872 5.9983 4.4437 23 14 14.6910 8.7619 4.4550 24 1 13.5238 9.4173 5.0977 25 1 15.8229 8.7136 5.4151 26 1 15.0942 9.5363 3.2537 27 6 10.3967 5.4409 2.0199 28 6 9.8197 5.3638 3.4099 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.0140 1.6543 -2.0138 35 1 3.8570 0.8801 1.0113 36 1 4.0029 0.9838 -0.7597 37 1 3.7721 3.4494 -0.6344 38 1 3.6263 3.3458 1.1365 39 1 6.0129 2.0489 0.3615 40 1 7.9840 3.4899 1.5020 41 1 8.1285 3.5950 -0.2690 42 1 7.8976 6.0602 -0.1425 43 1 7.7531 5.9560 1.6285 44 1 10.1652 6.6939 -1.9491 45 1 11.0412 5.1727 -2.2440 46 1 9.3096 5.1373 -1.8333 47 1 12.5290 4.8462 3.5321 48 1 13.6814 4.9331 2.1784 49 1 15.6123 6.1442 5.0712 50 1 9.6866 4.3190 3.6906 51 1 10.4998 5.8450 4.1129 52 1 8.8554 5.8715 3.4317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123121677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:17 Heat of formation + Delta-G solvation = -81.906634 kcal Electronic energy + Delta-G solvation = -28454.874666 eV Core-core repulsion = 24453.390810 eV Total energy + Delta-G solvation = -4001.483856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14546 -40.67144 -39.08020 -36.18062 -35.92397 -34.83215 -34.17761 -33.73102 -32.17735 -31.32483 -30.45836 -28.25968 -27.61664 -26.68187 -25.12329 -23.83911 -22.75858 -22.34435 -21.22459 -20.30321 -20.12689 -18.82175 -18.03558 -17.32870 -17.26584 -16.97099 -16.82140 -16.50303 -16.22145 -15.94978 -15.42995 -15.21280 -14.89103 -14.65009 -14.53483 -14.35913 -14.03229 -14.00077 -13.84087 -13.49586 -13.47139 -13.36824 -13.23340 -13.17866 -12.88244 -12.85225 -12.75140 -12.61849 -12.56551 -12.47562 -12.21256 -12.17570 -11.85781 -11.80566 -11.72818 -11.63294 -11.16184 -11.02695 -10.75383 -10.63885 -10.02851 -9.82843 -9.02152 -8.35073 -6.53020 1.18014 1.35822 1.37263 1.46356 1.72796 1.89481 1.95037 2.32280 2.33435 2.94228 3.51220 3.78055 3.80108 3.90522 3.95686 4.04179 4.13349 4.25448 4.28297 4.29641 4.33026 4.37243 4.59083 4.61380 4.67946 4.69887 4.73469 4.76997 4.81227 4.84492 4.86641 4.87916 4.95346 4.97990 5.05729 5.06923 5.14359 5.15359 5.15630 5.32275 5.37446 5.43034 5.44988 5.49921 5.53474 5.57490 5.80206 6.06043 6.32234 6.62178 6.62623 6.91307 7.12257 7.18457 7.34740 8.70539 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.001702 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.306560 B =16446.229097 C =16888.805587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.088 0.912 5 O -0.579 6.579 6 C -0.151 4.151 7 C 0.122 3.878 8 N -0.721 5.721 9 C 0.513 3.487 10 O -0.585 6.585 11 C -0.124 4.124 12 C -0.005 4.005 13 C -0.258 4.258 14 C 0.053 3.947 15 C -0.062 4.062 16 N -0.349 5.349 17 N -0.355 5.355 18 C 0.276 3.724 19 C -0.556 4.556 20 H 0.046 0.954 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.969 3.031 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.276 1.276 27 C 0.078 3.922 28 C -0.087 4.087 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.387 0.613 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.416 0.584 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.047 0.953 48 H 0.019 0.981 49 H 0.274 0.726 50 H 0.094 0.906 51 H 0.058 0.942 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.713 -15.174 -8.813 31.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C 0.049 3.951 4 H 0.106 0.894 5 O -0.387 6.387 6 C -0.189 4.189 7 C -0.001 4.001 8 N -0.374 5.374 9 C 0.301 3.699 10 O -0.465 6.465 11 C -0.164 4.164 12 C -0.044 4.044 13 C -0.269 4.269 14 C -0.112 4.112 15 C -0.121 4.121 16 N -0.173 5.173 17 N -0.135 5.135 18 C 0.157 3.843 19 C -0.594 4.594 20 H 0.065 0.935 21 C -0.178 4.178 22 N -0.555 5.555 23 Si 0.793 3.207 24 H -0.191 1.191 25 H -0.195 1.195 26 H -0.202 1.202 27 C -0.051 4.051 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.236 0.764 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.253 0.747 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.116 0.884 47 H 0.065 0.935 48 H 0.038 0.962 49 H 0.083 0.917 50 H 0.112 0.888 51 H 0.077 0.923 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.915 -14.107 -8.420 29.844 hybrid contribution 0.577 0.232 0.354 0.716 sum -24.337 -13.874 -8.067 29.152 Atomic orbital electron populations 1.21720 0.95741 1.01706 1.01787 1.22190 0.96581 0.96157 1.03817 1.21904 0.92370 0.93447 0.87379 0.89360 1.86596 1.77419 1.58088 1.16606 1.22455 0.96669 0.94787 1.04994 1.21239 0.79559 0.98305 1.01042 1.45968 1.07893 1.09097 1.74470 1.21103 0.90840 0.83310 0.74610 1.90698 1.70980 1.33237 1.51629 1.21627 0.89623 0.99300 1.05825 1.19363 0.87029 0.95504 1.02483 1.19718 0.96720 1.20237 0.90267 1.22792 0.89859 1.00009 0.98496 1.20203 1.02753 1.03242 0.85870 1.77203 1.23658 1.27100 0.89347 1.49000 1.06144 1.53965 1.04421 1.19115 0.82441 0.97468 0.85324 1.21417 1.18437 0.92133 1.27403 0.93537 1.25725 0.94979 1.01919 0.95131 1.69994 1.22380 1.32151 1.30974 0.85439 0.78340 0.78756 0.78162 1.19064 1.19524 1.20178 1.21448 0.84313 1.00841 0.98526 1.20477 1.01181 1.03889 0.88927 0.92981 0.92171 0.93222 0.90450 0.90055 0.76382 0.88789 0.89107 0.92722 0.93308 0.74705 0.87690 0.87186 0.91300 0.91963 0.90467 0.91048 0.88373 0.93493 0.96246 0.91719 0.88777 0.92340 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 71.98 0.71 -0.51 16 2 C -0.15 -0.84 5.61 30.60 0.17 -0.67 16 3 C 0.11 0.91 2.97 30.60 0.09 1.00 16 4 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 5 O -0.58 -6.69 12.41 -148.98 -1.85 -8.54 16 6 C -0.15 -0.98 5.01 30.59 0.15 -0.82 16 7 C 0.12 1.75 5.57 86.38 0.48 2.23 16 8 N -0.72 -10.19 5.56 -463.06 -2.57 -12.76 16 9 C 0.51 11.10 7.83 87.66 0.69 11.79 16 10 O -0.59 -18.16 15.98 -3.05 -0.05 -18.21 16 11 C -0.12 -2.45 5.68 29.85 0.17 -2.28 16 12 C 0.00 -0.13 4.45 29.85 0.13 0.00 16 13 C -0.26 -8.95 5.35 -20.14 -0.11 -9.06 16 14 C 0.05 1.99 7.22 43.10 0.31 2.30 16 15 C -0.06 -1.65 10.12 71.24 0.72 -0.93 16 16 N -0.35 -16.43 12.58 -47.38 -0.60 -17.03 16 17 N -0.36 -17.08 3.60 -338.42 -1.22 -18.30 16 18 C 0.28 14.82 5.81 85.63 0.50 15.32 16 19 C -0.56 -31.84 9.39 25.60 0.24 -31.60 16 20 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 21 C 0.02 1.31 5.46 84.65 0.46 1.77 16 22 N -0.92 -52.40 13.29 21.45 0.28 -52.12 16 23 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 27 C 0.08 3.11 6.93 41.40 0.29 3.40 16 28 C -0.09 -2.80 9.68 71.23 0.69 -2.11 16 29 H 0.05 0.51 7.82 -2.39 -0.02 0.49 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.39 1.76 9.05 -74.06 -0.67 1.09 16 35 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.42 3.13 8.47 -92.71 -0.79 2.34 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.89 7.88 -2.39 -0.02 1.87 16 43 H 0.06 1.78 7.09 -2.39 -0.02 1.76 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.98 7.92 -2.39 -0.02 1.96 16 47 H 0.05 2.49 7.68 -2.38 -0.02 2.48 16 48 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 51 H 0.06 2.17 7.74 -2.39 -0.02 2.15 16 52 H 0.10 2.67 7.14 -2.38 -0.02 2.65 16 Total: -1.00 -76.91 429.88 1.18 -75.73 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.55 Total: 15.56 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 5.69 Total: -10.15 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.10 Total: -100.21 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.90 Total: -26.76 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.91 1.18 -75.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123121677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.173 kcal (2) G-P(sol) polarization free energy of solvation -76.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds