Wall clock time and date at job start Tue Mar 31 2020 20:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 O 1.42902 * 109.47296 * 65.00043 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 C 1.53009 * 109.47333 * 175.00082 * 6 3 2 8 8 N 1.46496 * 109.47080 * 180.02562 * 7 6 3 9 9 C 1.34772 * 119.99932 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99796 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00551 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47741 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47332 * 179.97438 * 12 11 9 14 14 C 1.39875 * 126.03556 * 90.02808 * 13 12 11 15 15 C 1.50693 * 125.90115 * 359.95575 * 14 13 12 16 16 N 1.30832 * 108.20086 * 179.97438 * 14 13 12 17 17 N 1.40092 * 108.20811 * 359.97438 * 16 14 13 18 18 C 1.46494 * 126.03841 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.47268 * 90.02194 * 18 17 16 20 20 H 1.07994 * 120.00206 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00126 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00337 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47141 * 59.99942 * 23 21 19 25 25 H 1.48496 * 109.47515 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47060 * 300.00453 * 23 21 19 27 27 C 1.34943 * 107.92107 * 359.75789 * 17 16 14 28 28 C 1.50697 * 126.12706 * 180.23840 * 27 17 16 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96702 * 114.00205 * 59.99480 * 5 3 2 35 35 H 1.09001 * 109.47310 * 295.00266 * 6 3 2 36 36 H 1.09002 * 109.47223 * 55.00225 * 6 3 2 37 37 H 1.09001 * 109.47073 * 300.00330 * 7 6 3 38 38 H 1.08993 * 109.46778 * 60.00094 * 7 6 3 39 39 H 0.96996 * 120.00466 * 359.97438 * 8 7 6 40 40 H 1.09001 * 109.46980 * 300.00186 * 11 9 8 41 41 H 1.09003 * 109.46716 * 59.99677 * 11 9 8 42 42 H 1.09001 * 109.47267 * 300.00294 * 12 11 9 43 43 H 1.09002 * 109.46613 * 59.99853 * 12 11 9 44 44 H 1.09003 * 109.47156 * 89.99579 * 15 14 13 45 45 H 1.08998 * 109.47785 * 210.00229 * 15 14 13 46 46 H 1.09005 * 109.47383 * 330.00370 * 15 14 13 47 47 H 1.09002 * 109.47380 * 210.02670 * 18 17 16 48 48 H 1.09005 * 109.47379 * 330.02504 * 18 17 16 49 49 H 0.96996 * 120.00161 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.47405 * 270.17814 * 28 27 17 51 51 H 1.09001 * 109.47488 * 30.17970 * 28 27 17 52 52 H 1.09004 * 109.47303 * 150.17935 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6621 2.0813 1.2210 6 6 3.5648 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2511 8 7 5.5246 2.8866 -0.3720 9 6 6.1893 4.0526 -0.4945 10 8 5.5786 5.1005 -0.5051 11 6 7.6912 4.0545 -0.6183 12 6 8.1909 5.4951 -0.7438 13 6 9.6928 5.4969 -0.8670 14 6 10.4207 5.4324 -2.0597 15 6 9.8382 5.3479 -3.4470 16 7 11.6946 5.4576 -1.7629 17 7 11.8179 5.5397 -0.3698 18 6 13.0738 5.5920 0.3826 19 6 13.4947 7.0283 0.5584 20 1 12.8873 7.8227 0.1508 21 6 14.6547 7.3282 1.2405 22 7 15.3943 6.3607 1.7374 23 14 15.1762 9.1086 1.4590 24 1 14.1224 9.8454 2.2021 25 1 16.4492 9.1615 2.2217 26 1 15.3715 9.7343 0.1265 27 6 10.5755 5.5681 0.1561 28 6 10.2325 5.6586 1.6207 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0142 1.6541 2.0139 35 1 4.0030 0.9834 0.7597 36 1 3.8571 0.8799 -1.0113 37 1 3.6265 3.3457 -1.1364 38 1 3.7724 3.4492 0.6345 39 1 6.0129 2.0486 -0.3632 40 1 8.1293 3.5933 0.2669 41 1 7.9833 3.4904 -1.5041 42 1 7.7528 5.9558 -1.6292 43 1 7.8986 6.0594 0.1418 44 1 9.6909 6.3535 -3.8410 45 1 10.5218 4.8000 -4.0955 46 1 8.8802 4.8292 -3.4079 47 1 12.9306 5.1330 1.3609 48 1 13.8470 5.0510 -0.1629 49 1 16.2106 6.5717 2.2170 50 1 10.1567 4.6548 2.0388 51 1 11.0130 6.2117 2.1432 52 1 9.2798 6.1746 1.7396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123121889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:21 Heat of formation + Delta-G solvation = -58.007957 kcal Electronic energy + Delta-G solvation = -28458.406252 eV Core-core repulsion = 24457.958721 eV Total energy + Delta-G solvation = -4000.447532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61284 -39.76448 -38.60770 -35.27488 -34.36438 -33.37343 -33.32558 -32.47303 -31.34391 -30.11463 -28.95257 -27.11224 -25.90646 -25.82304 -23.77563 -22.47395 -22.01280 -21.90736 -20.34801 -18.79298 -18.62514 -17.18692 -16.86761 -16.69096 -16.34351 -16.25207 -15.74757 -15.41315 -14.90154 -14.54965 -14.45364 -14.33137 -13.87538 -13.65818 -13.31981 -13.05723 -12.97789 -12.89815 -12.54194 -12.51965 -12.50083 -12.26854 -12.14074 -11.98872 -11.84218 -11.67917 -11.59542 -11.49535 -11.34320 -11.25977 -11.20226 -10.96035 -10.78946 -10.71168 -10.48789 -10.25668 -9.84864 -9.73594 -9.58565 -9.23574 -8.64549 -8.17018 -7.46544 -6.26457 -4.34069 2.64320 2.75830 2.99449 3.23255 3.26969 3.31240 3.41431 3.63140 3.86273 4.16026 4.29642 4.36273 4.50831 4.64620 4.68835 4.86777 4.96892 5.06971 5.11182 5.20486 5.25304 5.26233 5.29736 5.36328 5.40426 5.44649 5.50319 5.67309 5.69875 5.73265 5.76644 5.79556 5.87750 5.97589 5.97753 6.02122 6.06379 6.23579 6.25586 6.39549 6.51315 6.55669 6.89741 7.02178 7.12037 7.17136 7.34733 7.52642 7.66275 7.88424 8.06789 8.17778 8.67338 8.75866 9.32541 10.80947 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.001713 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.653513 B =16342.426466 C =16819.328358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.101 0.899 5 O -0.558 6.558 6 C -0.165 4.165 7 C 0.122 3.878 8 N -0.740 5.740 9 C 0.512 3.488 10 O -0.538 6.538 11 C -0.133 4.133 12 C -0.011 4.011 13 C -0.269 4.269 14 C 0.050 3.950 15 C -0.064 4.064 16 N -0.297 5.297 17 N -0.325 5.325 18 C 0.257 3.743 19 C -0.537 4.537 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.094 3.906 28 C -0.091 4.091 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.374 0.626 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.268 0.732 50 H 0.068 0.932 51 H 0.081 0.919 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.169 -14.735 -2.340 29.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C 0.049 3.951 4 H 0.119 0.881 5 O -0.363 6.363 6 C -0.203 4.203 7 C -0.002 4.002 8 N -0.393 5.393 9 C 0.299 3.701 10 O -0.415 6.415 11 C -0.173 4.173 12 C -0.050 4.050 13 C -0.281 4.281 14 C -0.115 4.115 15 C -0.122 4.122 16 N -0.121 5.121 17 N -0.105 5.105 18 C 0.140 3.860 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.038 4.038 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.221 0.779 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.087 0.913 51 H 0.100 0.900 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.378 -13.622 -3.034 28.090 hybrid contribution 0.332 0.007 0.848 0.911 sum -24.046 -13.615 -2.186 27.719 Atomic orbital electron populations 1.21710 0.94976 1.01535 1.02538 1.22238 0.97312 0.96967 1.02841 1.21906 0.92121 0.92951 0.88119 0.88080 1.86627 1.76926 1.57197 1.15596 1.22550 0.97190 0.97077 1.03484 1.21240 0.80062 0.96248 1.02651 1.46117 1.07599 1.09254 1.76308 1.21068 0.90716 0.83169 0.75121 1.90706 1.70175 1.31424 1.49156 1.21747 0.89946 1.01389 1.04230 1.19391 0.89722 0.93170 1.02681 1.19365 0.95012 1.22118 0.91587 1.21950 0.91151 1.02598 0.95754 1.20015 0.99611 1.02088 0.90521 1.77263 1.17950 1.24518 0.92338 1.49245 1.06641 1.51148 1.03461 1.19641 0.77347 0.98835 0.90225 1.21285 1.08458 0.91347 1.36483 0.91836 1.24924 0.95678 0.98288 0.94831 1.69910 1.14881 1.32034 1.36151 0.86416 0.77910 0.83853 0.78525 1.19925 1.20936 1.19947 1.20767 0.85851 1.01143 0.96000 1.20402 1.02744 1.02314 0.89493 0.92668 0.91991 0.92818 0.91575 0.90981 0.77858 0.90845 0.90279 0.91703 0.90885 0.76721 0.89074 0.89072 0.91315 0.91391 0.91393 0.91657 0.91468 0.93111 0.93079 0.92211 0.91306 0.89984 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.81 37.16 0.36 -0.32 16 2 C -0.16 -0.60 5.61 -26.74 -0.15 -0.75 16 3 C 0.11 0.54 2.97 -26.74 -0.08 0.46 16 4 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 5 O -0.56 -3.58 12.41 -35.23 -0.44 -4.01 16 6 C -0.16 -0.75 5.01 -26.73 -0.13 -0.88 16 7 C 0.12 0.96 5.57 -4.04 -0.02 0.94 16 8 N -0.74 -6.19 5.56 -60.29 -0.33 -6.52 16 9 C 0.51 6.09 7.83 -10.99 -0.09 6.01 16 10 O -0.54 -8.62 15.98 5.55 0.09 -8.54 16 11 C -0.13 -1.51 5.68 -27.88 -0.16 -1.67 16 12 C -0.01 -0.16 4.45 -27.89 -0.12 -0.28 16 13 C -0.27 -4.83 5.35 -105.05 -0.56 -5.39 16 14 C 0.05 0.95 7.22 -82.41 -0.59 0.36 16 15 C -0.06 -0.91 10.12 36.00 0.36 -0.55 16 16 N -0.30 -6.85 12.58 33.67 0.42 -6.42 16 17 N -0.33 -7.61 3.60 -58.32 -0.21 -7.82 16 18 C 0.26 6.61 5.81 -5.20 -0.03 6.58 16 19 C -0.54 -14.90 9.39 -34.44 -0.32 -15.22 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 23 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.09 1.87 6.93 -82.27 -0.57 1.30 16 28 C -0.09 -1.51 9.68 36.00 0.35 -1.16 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 7.82 -51.93 -0.41 -0.08 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.37 1.20 9.05 45.56 0.41 1.61 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 39 H 0.40 2.23 8.47 -40.82 -0.35 1.89 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 43 H 0.07 1.03 7.09 -51.93 -0.37 0.66 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 47 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 48 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 49 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 50 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 51 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 52 H 0.07 1.08 7.14 -51.93 -0.37 0.71 16 LS Contribution 429.87 15.07 6.48 6.48 Total: -1.00 -34.12 429.87 -8.70 -42.82 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.57 Total: 1.02 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.85 Total: -8.86 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.62 Total: -45.14 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.35 Total: -12.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -34.12 -8.70 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123121889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.189 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds