Wall clock time and date at job start Tue Mar 31 2020 20:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 O 1.42902 * 109.47296 * 65.00043 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 C 1.53009 * 109.47333 * 175.00082 * 6 3 2 8 8 N 1.46496 * 109.47080 * 180.02562 * 7 6 3 9 9 C 1.34772 * 119.99932 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99796 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00551 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47741 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47332 * 179.97438 * 12 11 9 14 14 C 1.39875 * 126.03556 * 90.02808 * 13 12 11 15 15 C 1.50693 * 125.90115 * 359.95575 * 14 13 12 16 16 N 1.30832 * 108.20086 * 179.97438 * 14 13 12 17 17 N 1.40092 * 108.20811 * 359.97438 * 16 14 13 18 18 C 1.46494 * 126.03841 * 180.02562 * 17 16 14 19 19 C 1.50698 * 109.47268 * 90.02194 * 18 17 16 20 20 H 1.07994 * 120.00206 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00126 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00337 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47141 * 59.99942 * 23 21 19 25 25 H 1.48496 * 109.47515 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47060 * 300.00453 * 23 21 19 27 27 C 1.34943 * 107.92107 * 359.75789 * 17 16 14 28 28 C 1.50697 * 126.12706 * 180.23840 * 27 17 16 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96702 * 114.00205 * 59.99480 * 5 3 2 35 35 H 1.09001 * 109.47310 * 295.00266 * 6 3 2 36 36 H 1.09002 * 109.47223 * 55.00225 * 6 3 2 37 37 H 1.09001 * 109.47073 * 300.00330 * 7 6 3 38 38 H 1.08993 * 109.46778 * 60.00094 * 7 6 3 39 39 H 0.96996 * 120.00466 * 359.97438 * 8 7 6 40 40 H 1.09001 * 109.46980 * 300.00186 * 11 9 8 41 41 H 1.09003 * 109.46716 * 59.99677 * 11 9 8 42 42 H 1.09001 * 109.47267 * 300.00294 * 12 11 9 43 43 H 1.09002 * 109.46613 * 59.99853 * 12 11 9 44 44 H 1.09003 * 109.47156 * 89.99579 * 15 14 13 45 45 H 1.08998 * 109.47785 * 210.00229 * 15 14 13 46 46 H 1.09005 * 109.47383 * 330.00370 * 15 14 13 47 47 H 1.09002 * 109.47380 * 210.02670 * 18 17 16 48 48 H 1.09005 * 109.47379 * 330.02504 * 18 17 16 49 49 H 0.96996 * 120.00161 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.47405 * 270.17814 * 28 27 17 51 51 H 1.09001 * 109.47488 * 30.17970 * 28 27 17 52 52 H 1.09004 * 109.47303 * 150.17935 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6621 2.0813 1.2210 6 6 3.5648 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2511 8 7 5.5246 2.8866 -0.3720 9 6 6.1893 4.0526 -0.4945 10 8 5.5786 5.1005 -0.5051 11 6 7.6912 4.0545 -0.6183 12 6 8.1909 5.4951 -0.7438 13 6 9.6928 5.4969 -0.8670 14 6 10.4207 5.4324 -2.0597 15 6 9.8382 5.3479 -3.4470 16 7 11.6946 5.4576 -1.7629 17 7 11.8179 5.5397 -0.3698 18 6 13.0738 5.5920 0.3826 19 6 13.4947 7.0283 0.5584 20 1 12.8873 7.8227 0.1508 21 6 14.6547 7.3282 1.2405 22 7 15.3943 6.3607 1.7374 23 14 15.1762 9.1086 1.4590 24 1 14.1224 9.8454 2.2021 25 1 16.4492 9.1615 2.2217 26 1 15.3715 9.7343 0.1265 27 6 10.5755 5.5681 0.1561 28 6 10.2325 5.6586 1.6207 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0142 1.6541 2.0139 35 1 4.0030 0.9834 0.7597 36 1 3.8571 0.8799 -1.0113 37 1 3.6265 3.3457 -1.1364 38 1 3.7724 3.4492 0.6345 39 1 6.0129 2.0486 -0.3632 40 1 8.1293 3.5933 0.2669 41 1 7.9833 3.4904 -1.5041 42 1 7.7528 5.9558 -1.6292 43 1 7.8986 6.0594 0.1418 44 1 9.6909 6.3535 -3.8410 45 1 10.5218 4.8000 -4.0955 46 1 8.8802 4.8292 -3.4079 47 1 12.9306 5.1330 1.3609 48 1 13.8470 5.0510 -0.1629 49 1 16.2106 6.5717 2.2170 50 1 10.1567 4.6548 2.0388 51 1 11.0130 6.2117 2.1432 52 1 9.2798 6.1746 1.7396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123121889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:20 Heat of formation + Delta-G solvation = -81.898173 kcal Electronic energy + Delta-G solvation = -28459.442210 eV Core-core repulsion = 24457.958721 eV Total energy + Delta-G solvation = -4001.483489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.14537 -40.67188 -39.08022 -36.18076 -35.92411 -34.83227 -34.17813 -33.73172 -32.17687 -31.32465 -30.45866 -28.25953 -27.61687 -26.68181 -25.12313 -23.83867 -22.75859 -22.34342 -21.22452 -20.30296 -20.12672 -18.82158 -18.03566 -17.35468 -17.22725 -16.96275 -16.85906 -16.48053 -16.22980 -15.94741 -15.43964 -15.16827 -14.94418 -14.67584 -14.49708 -14.30701 -14.09903 -14.02100 -13.78628 -13.50571 -13.47193 -13.38053 -13.23514 -13.16321 -12.88187 -12.85626 -12.75056 -12.61804 -12.56241 -12.47900 -12.21366 -12.17353 -11.85732 -11.80496 -11.72786 -11.63208 -11.16302 -11.02505 -10.75342 -10.63968 -10.02852 -9.82883 -9.02099 -8.35014 -6.52972 1.18037 1.35867 1.37277 1.46385 1.72805 1.89473 1.95035 2.32320 2.33471 2.94272 3.51160 3.78066 3.80193 3.90606 3.95760 4.03771 4.13957 4.25396 4.28368 4.29576 4.32789 4.37522 4.59163 4.61309 4.68016 4.69847 4.73490 4.76510 4.82302 4.84196 4.86487 4.87857 4.95409 4.97936 5.05742 5.07019 5.14380 5.15400 5.15624 5.32283 5.37467 5.43119 5.45000 5.49953 5.53510 5.57510 5.80230 6.06056 6.32260 6.62208 6.62647 6.90776 7.12263 7.18499 7.34770 8.70596 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.001713 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.653513 B =16342.426466 C =16819.328358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.089 0.911 5 O -0.580 6.580 6 C -0.151 4.151 7 C 0.122 3.878 8 N -0.721 5.721 9 C 0.513 3.487 10 O -0.585 6.585 11 C -0.124 4.124 12 C -0.005 4.005 13 C -0.258 4.258 14 C 0.053 3.947 15 C -0.062 4.062 16 N -0.349 5.349 17 N -0.355 5.355 18 C 0.276 3.724 19 C -0.556 4.556 20 H 0.046 0.954 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.969 3.031 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.276 1.276 27 C 0.078 3.922 28 C -0.087 4.087 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.387 0.613 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.416 0.584 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.047 0.953 48 H 0.019 0.981 49 H 0.274 0.726 50 H 0.094 0.906 51 H 0.058 0.942 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.635 -15.833 -2.418 31.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C 0.049 3.951 4 H 0.107 0.893 5 O -0.388 6.388 6 C -0.189 4.189 7 C -0.001 4.001 8 N -0.374 5.374 9 C 0.301 3.699 10 O -0.465 6.465 11 C -0.164 4.164 12 C -0.044 4.044 13 C -0.269 4.269 14 C -0.112 4.112 15 C -0.121 4.121 16 N -0.173 5.173 17 N -0.135 5.135 18 C 0.157 3.843 19 C -0.594 4.594 20 H 0.065 0.935 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.793 3.207 24 H -0.191 1.191 25 H -0.195 1.195 26 H -0.202 1.202 27 C -0.051 4.051 28 C -0.145 4.145 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.236 0.764 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.065 0.935 48 H 0.038 0.962 49 H 0.083 0.917 50 H 0.112 0.888 51 H 0.077 0.923 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.861 -14.782 -3.102 29.948 hybrid contribution 0.675 0.301 0.826 1.109 sum -25.186 -14.481 -2.276 29.141 Atomic orbital electron populations 1.21720 0.95736 1.01705 1.01790 1.22186 0.96583 0.96157 1.03818 1.21912 0.92373 0.93458 0.87371 0.89254 1.86595 1.77433 1.58112 1.16634 1.22457 0.96667 0.94792 1.04993 1.21240 0.79562 0.98298 1.01045 1.45963 1.07903 1.09092 1.74464 1.21101 0.90830 0.83310 0.74622 1.90698 1.70990 1.33216 1.51640 1.21627 0.89604 0.99325 1.05822 1.19360 0.87077 0.95474 1.02467 1.19719 0.96456 1.20236 0.90536 1.22790 0.90171 1.00038 0.98152 1.20202 1.00868 1.03230 0.87771 1.77201 1.20472 1.27165 0.92470 1.48999 1.06750 1.53939 1.03843 1.19115 0.78111 0.97340 0.89784 1.21418 1.08969 0.91946 1.37059 0.93538 1.25723 0.95395 1.02461 0.94169 1.69991 1.15221 1.33947 1.36342 0.85441 0.78095 0.78774 0.78394 1.19063 1.19523 1.20179 1.21447 0.84965 1.00732 0.97979 1.20477 1.02845 1.03799 0.87356 0.93158 0.93042 0.92169 0.90545 0.89965 0.76404 0.89262 0.88641 0.93121 0.92903 0.74706 0.87705 0.87173 0.91288 0.91977 0.90465 0.91052 0.88367 0.93490 0.96244 0.91716 0.88775 0.92338 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.81 71.98 0.71 -0.50 16 2 C -0.15 -0.83 5.61 30.59 0.17 -0.66 16 3 C 0.11 0.91 2.97 30.59 0.09 1.00 16 4 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 5 O -0.58 -6.88 12.41 -148.98 -1.85 -8.73 16 6 C -0.15 -0.98 5.01 30.60 0.15 -0.82 16 7 C 0.12 1.75 5.57 86.38 0.48 2.23 16 8 N -0.72 -10.19 5.56 -463.06 -2.57 -12.76 16 9 C 0.51 11.10 7.83 87.66 0.69 11.79 16 10 O -0.59 -18.16 15.98 -3.05 -0.05 -18.21 16 11 C -0.12 -2.45 5.68 29.85 0.17 -2.28 16 12 C 0.00 -0.13 4.45 29.85 0.13 0.00 16 13 C -0.26 -8.95 5.35 -20.14 -0.11 -9.06 16 14 C 0.05 1.99 7.22 43.10 0.31 2.31 16 15 C -0.06 -1.65 10.12 71.23 0.72 -0.93 16 16 N -0.35 -16.43 12.58 -47.39 -0.60 -17.03 16 17 N -0.36 -17.08 3.60 -338.42 -1.22 -18.30 16 18 C 0.28 14.82 5.81 85.63 0.50 15.32 16 19 C -0.56 -31.84 9.39 25.60 0.24 -31.60 16 20 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 21 C 0.02 1.32 5.46 84.65 0.46 1.78 16 22 N -0.92 -52.41 13.29 21.45 0.28 -52.12 16 23 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 C 0.08 3.11 6.93 41.40 0.29 3.40 16 28 C -0.09 -2.80 9.68 71.23 0.69 -2.11 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.51 7.82 -2.39 -0.02 0.49 16 31 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.39 1.96 9.05 -74.06 -0.67 1.29 16 35 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16 39 H 0.42 3.13 8.47 -92.71 -0.79 2.34 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.89 7.88 -2.39 -0.02 1.87 16 43 H 0.06 1.78 7.09 -2.39 -0.02 1.76 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.98 7.92 -2.38 -0.02 1.96 16 47 H 0.05 2.50 7.68 -2.39 -0.02 2.48 16 48 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 51 H 0.06 2.17 7.74 -2.39 -0.02 2.15 16 52 H 0.10 2.67 7.14 -2.38 -0.02 2.65 16 Total: -1.00 -76.91 429.87 1.18 -75.74 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.55 Total: 15.73 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 5.69 Total: -10.15 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.10 Total: -100.21 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.90 Total: -26.94 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.91 1.18 -75.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123121889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.159 kcal (2) G-P(sol) polarization free energy of solvation -76.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds