Wall clock time and date at job start Tue Mar 31 2020 20:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.09001 * 109.46931 * 54.99954 * 3 2 1 5 5 C 1.52998 * 109.46995 * 174.99840 * 3 2 1 6 6 O 1.42902 * 109.47147 * 54.99675 * 5 3 2 7 7 C 1.42901 * 113.99840 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.46808 * 294.99828 * 3 2 1 9 9 C 1.34780 * 120.00031 * 85.00504 * 8 3 2 10 10 O 1.21273 * 119.99822 * 359.97438 * 9 8 3 11 11 C 1.50695 * 119.99639 * 179.97438 * 9 8 3 12 12 C 1.52999 * 109.46918 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47451 * 180.02562 * 12 11 9 14 14 C 1.39866 * 126.04287 * 89.96846 * 13 12 11 15 15 C 1.50705 * 125.89802 * 0.03191 * 14 13 12 16 16 N 1.30837 * 108.20458 * 180.02562 * 14 13 12 17 17 N 1.40086 * 108.20700 * 0.02562 * 16 14 13 18 18 C 1.46491 * 126.04129 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46957 * 90.02579 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.34955 * 107.92007 * 0.26426 * 17 16 14 28 28 C 1.50708 * 126.12162 * 179.73553 * 27 17 16 29 29 H 1.08995 * 109.47080 * 60.00305 * 1 2 3 30 30 H 1.09008 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47219 * 300.00303 * 1 2 3 32 32 H 1.08999 * 109.47219 * 239.99697 * 2 1 3 33 33 H 1.09000 * 109.46618 * 119.99717 * 2 1 3 34 34 H 1.09005 * 109.47255 * 174.99893 * 5 3 2 35 35 H 1.09001 * 109.47365 * 295.00006 * 5 3 2 36 36 H 1.09003 * 109.47171 * 299.99732 * 7 6 5 37 37 H 1.08993 * 109.47323 * 60.00694 * 7 6 5 38 38 H 1.09005 * 109.46652 * 180.02562 * 7 6 5 39 39 H 0.97005 * 119.99776 * 264.99162 * 8 3 2 40 40 H 1.08997 * 109.47366 * 60.00063 * 11 9 8 41 41 H 1.09000 * 109.47755 * 299.99776 * 11 9 8 42 42 H 1.09001 * 109.47356 * 60.00206 * 12 11 9 43 43 H 1.09002 * 109.47319 * 299.99905 * 12 11 9 44 44 H 1.08999 * 109.46544 * 269.99193 * 15 14 13 45 45 H 1.09000 * 109.47294 * 29.99156 * 15 14 13 46 46 H 1.08993 * 109.46794 * 149.99571 * 15 14 13 47 47 H 1.09004 * 109.47166 * 330.02845 * 18 17 16 48 48 H 1.08994 * 109.47507 * 210.02551 * 18 17 16 49 49 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.47042 * 90.02700 * 28 27 17 51 51 H 1.09007 * 109.46511 * 210.02061 * 28 27 17 52 52 H 1.08991 * 109.47237 * 330.02091 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 8 4.1293 0.6404 -0.9120 7 6 5.5566 0.5752 -0.8854 8 7 1.6524 2.0974 -1.2518 9 6 0.4351 2.6643 -1.3670 10 8 -0.3396 2.6319 -0.4345 11 6 0.0367 3.3385 -2.6545 12 6 -1.3826 3.8941 -2.5213 13 6 -1.7813 4.5678 -3.8091 14 6 -2.4175 3.9570 -4.8946 15 6 -2.8246 2.5085 -4.9796 16 7 -2.5983 4.8604 -5.8236 17 7 -2.0815 6.0764 -5.3581 18 6 -2.0791 7.3473 -6.0867 19 6 -3.3432 8.1067 -5.7762 20 1 -4.0751 7.6850 -5.1031 21 6 -3.5627 9.3427 -6.3466 22 7 -2.6714 9.8563 -7.1660 23 14 -5.1261 10.2873 -5.9558 24 1 -4.8989 11.1514 -4.7696 25 1 -5.4981 11.1318 -7.1192 26 1 -6.2241 9.3300 -5.6677 27 6 -1.5805 5.8688 -4.1223 28 6 -0.9199 6.9020 -3.2463 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9355 2.4656 0.0366 35 1 3.8499 1.0377 1.0961 36 1 5.9682 1.5784 -0.9959 37 1 5.8833 0.1508 0.0638 38 1 5.9069 -0.0531 -1.7044 39 1 2.2720 2.1231 -1.9978 40 1 0.0680 2.6144 -3.4686 41 1 0.7281 4.1540 -2.8668 42 1 -1.4144 4.6182 -1.7071 43 1 -2.0738 3.0784 -2.3093 44 1 -2.0075 1.9259 -5.4052 45 1 -3.0545 2.1365 -3.9812 46 1 -3.7060 2.4155 -5.6139 47 1 -2.0264 7.1519 -7.1578 48 1 -1.2158 7.9390 -5.7824 49 1 -2.8260 10.7257 -7.5676 50 1 -1.6730 7.3869 -2.6252 51 1 -0.1798 6.4181 -2.6088 52 1 -0.4291 7.6479 -3.8712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151011534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:12 Heat of formation + Delta-G solvation = -39.595412 kcal Electronic energy + Delta-G solvation = -29475.444631 eV Core-core repulsion = 25475.795527 eV Total energy + Delta-G solvation = -3999.649104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.62075 -40.08159 -38.37143 -35.75017 -34.33733 -33.37697 -32.46670 -32.40023 -30.26692 -29.52230 -28.93175 -26.93358 -26.43539 -25.85236 -24.07768 -23.54599 -22.24701 -20.96127 -20.37396 -18.77700 -18.60948 -17.24057 -17.06308 -16.68278 -16.42280 -15.92714 -15.59393 -15.42963 -15.20603 -14.52721 -14.32617 -14.23433 -13.79596 -13.42170 -13.21153 -13.10504 -12.90780 -12.85981 -12.66728 -12.48369 -12.33527 -12.25749 -12.06096 -11.86270 -11.76837 -11.61566 -11.54202 -11.31025 -11.23452 -11.21583 -10.96751 -10.93871 -10.79424 -10.65637 -10.24704 -10.16447 -9.79273 -9.70424 -9.56175 -9.11334 -8.64096 -8.15566 -7.44241 -6.25756 -4.32840 2.67946 2.78091 3.04353 3.21359 3.27864 3.31693 3.33611 3.45647 3.64282 4.30358 4.35765 4.60228 4.82245 4.83220 4.91079 4.96533 5.00593 5.08013 5.13246 5.23192 5.25186 5.31982 5.35211 5.37630 5.43976 5.52794 5.68203 5.74216 5.80942 5.86532 5.87089 5.97529 6.01957 6.04865 6.05828 6.09790 6.26845 6.31098 6.37916 6.39371 6.50753 6.58216 6.64631 6.88519 7.04622 7.14094 7.45098 7.54580 7.67344 7.89447 8.08118 8.24123 8.68919 8.77281 9.33475 10.81808 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.002131 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.639801 B =13137.002317 C =13567.414019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.148 3.852 4 H 0.099 0.901 5 C 0.051 3.949 6 O -0.387 6.387 7 C 0.031 3.969 8 N -0.728 5.728 9 C 0.514 3.486 10 O -0.536 6.536 11 C -0.134 4.134 12 C -0.009 4.009 13 C -0.268 4.268 14 C 0.050 3.950 15 C -0.064 4.064 16 N -0.297 5.297 17 N -0.325 5.325 18 C 0.257 3.743 19 C -0.534 4.534 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.093 3.907 28 C -0.085 4.085 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.404 0.596 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.268 0.732 50 H 0.076 0.924 51 H 0.070 0.930 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.637 -17.825 14.351 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.043 3.957 4 H 0.117 0.883 5 C -0.026 4.026 6 O -0.305 6.305 7 C -0.066 4.066 8 N -0.381 5.381 9 C 0.301 3.699 10 O -0.412 6.412 11 C -0.174 4.174 12 C -0.048 4.048 13 C -0.280 4.280 14 C -0.114 4.114 15 C -0.123 4.123 16 N -0.121 5.121 17 N -0.105 5.105 18 C 0.139 3.861 19 C -0.573 4.573 20 H 0.082 0.918 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.039 4.039 28 C -0.144 4.144 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.238 0.762 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.095 0.905 51 H 0.089 0.911 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.532 -17.381 13.489 26.367 hybrid contribution 0.131 0.718 0.629 0.963 sum 14.663 -16.663 14.118 26.305 Atomic orbital electron populations 1.21825 0.94796 1.00515 1.03211 1.21844 0.96833 0.95533 1.02478 1.21080 0.91539 0.94388 0.88644 0.88292 1.22892 0.93371 0.94996 0.91327 1.87898 1.20196 1.70624 1.51824 1.22759 0.80873 1.01069 1.01853 1.46093 1.17334 1.58201 1.16477 1.20985 0.80939 0.77603 0.90336 1.90695 1.50897 1.58793 1.40849 1.21749 1.00097 1.01002 0.94578 1.19381 0.92865 0.99072 0.93522 1.19362 1.16070 0.93300 0.99270 1.21943 1.00551 0.96086 0.92802 1.20024 1.01138 0.88959 1.02180 1.77271 1.21203 0.90446 1.23218 1.49232 1.40767 1.08857 1.11627 1.19643 0.98684 0.74861 0.92888 1.21309 1.04252 1.02604 1.29110 0.91805 1.24933 0.97329 0.97070 0.94518 1.69922 1.34902 1.18357 1.29847 0.86352 0.82748 0.79590 0.78002 1.20312 1.20866 1.19665 1.20778 0.99266 0.95448 0.88401 1.20345 0.99840 0.96324 0.97866 0.92168 0.93739 0.92311 0.91069 0.91714 0.92491 0.91904 0.93968 0.94066 0.89489 0.76191 0.89084 0.89214 0.91451 0.91308 0.91607 0.91237 0.91617 0.93102 0.93131 0.92283 0.90492 0.91107 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.51 37.16 0.32 -1.18 16 2 C -0.13 -1.08 5.33 -26.73 -0.14 -1.23 16 3 C 0.15 1.21 2.66 -67.93 -0.18 1.03 16 4 H 0.10 0.91 7.58 -51.93 -0.39 0.51 16 5 C 0.05 0.32 5.68 37.16 0.21 0.53 16 6 O -0.39 -2.77 9.65 -35.23 -0.34 -3.11 16 7 C 0.03 0.15 11.01 101.05 1.11 1.26 16 8 N -0.73 -6.45 5.01 -53.81 -0.27 -6.72 16 9 C 0.51 5.86 6.40 -10.99 -0.07 5.79 16 10 O -0.54 -7.71 13.12 5.56 0.07 -7.64 16 11 C -0.13 -1.53 5.68 -27.89 -0.16 -1.69 16 12 C -0.01 -0.14 4.41 -27.88 -0.12 -0.26 16 13 C -0.27 -4.81 5.35 -105.05 -0.56 -5.37 16 14 C 0.05 0.97 7.22 -82.40 -0.59 0.37 16 15 C -0.06 -0.93 10.26 36.01 0.37 -0.56 16 16 N -0.30 -6.90 12.58 33.67 0.42 -6.48 16 17 N -0.33 -7.65 3.60 -58.31 -0.21 -7.86 16 18 C 0.26 6.63 6.00 -5.20 -0.03 6.60 16 19 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 20 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 23 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.09 1.85 6.93 -82.26 -0.57 1.27 16 28 C -0.09 -1.41 9.72 36.01 0.35 -1.06 16 29 H 0.06 0.72 5.64 -51.93 -0.29 0.43 16 30 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 32 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.40 3.01 8.38 -40.82 -0.34 2.67 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16 43 H 0.07 1.00 7.21 -51.93 -0.37 0.62 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.88 7.25 -51.93 -0.38 0.51 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.05 1.29 7.04 -51.93 -0.37 0.92 16 49 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 51 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 52 H 0.07 1.21 7.07 -51.93 -0.37 0.85 16 LS Contribution 421.39 15.07 6.35 6.35 Total: -1.00 -32.46 421.39 -7.92 -40.38 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -9.17 Total: 1.27 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.49 Total: -8.00 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.68 Total: -45.57 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.27 Total: -10.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.46 -7.92 -40.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151011534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.785 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds