Wall clock time and date at job start Tue Mar 31 2020 20:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.09001 * 109.46931 * 54.99954 * 3 2 1 5 5 C 1.52998 * 109.46995 * 174.99840 * 3 2 1 6 6 O 1.42902 * 109.47147 * 54.99675 * 5 3 2 7 7 C 1.42901 * 113.99840 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.46808 * 294.99828 * 3 2 1 9 9 C 1.34780 * 120.00031 * 85.00504 * 8 3 2 10 10 O 1.21273 * 119.99822 * 359.97438 * 9 8 3 11 11 C 1.50695 * 119.99639 * 179.97438 * 9 8 3 12 12 C 1.52999 * 109.46918 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47451 * 180.02562 * 12 11 9 14 14 C 1.39866 * 126.04287 * 89.96846 * 13 12 11 15 15 C 1.50705 * 125.89802 * 0.03191 * 14 13 12 16 16 N 1.30837 * 108.20458 * 180.02562 * 14 13 12 17 17 N 1.40086 * 108.20700 * 0.02562 * 16 14 13 18 18 C 1.46491 * 126.04129 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46957 * 90.02579 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.34955 * 107.92007 * 0.26426 * 17 16 14 28 28 C 1.50708 * 126.12162 * 179.73553 * 27 17 16 29 29 H 1.08995 * 109.47080 * 60.00305 * 1 2 3 30 30 H 1.09008 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47219 * 300.00303 * 1 2 3 32 32 H 1.08999 * 109.47219 * 239.99697 * 2 1 3 33 33 H 1.09000 * 109.46618 * 119.99717 * 2 1 3 34 34 H 1.09005 * 109.47255 * 174.99893 * 5 3 2 35 35 H 1.09001 * 109.47365 * 295.00006 * 5 3 2 36 36 H 1.09003 * 109.47171 * 299.99732 * 7 6 5 37 37 H 1.08993 * 109.47323 * 60.00694 * 7 6 5 38 38 H 1.09005 * 109.46652 * 180.02562 * 7 6 5 39 39 H 0.97005 * 119.99776 * 264.99162 * 8 3 2 40 40 H 1.08997 * 109.47366 * 60.00063 * 11 9 8 41 41 H 1.09000 * 109.47755 * 299.99776 * 11 9 8 42 42 H 1.09001 * 109.47356 * 60.00206 * 12 11 9 43 43 H 1.09002 * 109.47319 * 299.99905 * 12 11 9 44 44 H 1.08999 * 109.46544 * 269.99193 * 15 14 13 45 45 H 1.09000 * 109.47294 * 29.99156 * 15 14 13 46 46 H 1.08993 * 109.46794 * 149.99571 * 15 14 13 47 47 H 1.09004 * 109.47166 * 330.02845 * 18 17 16 48 48 H 1.08994 * 109.47507 * 210.02551 * 18 17 16 49 49 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.47042 * 90.02700 * 28 27 17 51 51 H 1.09007 * 109.46511 * 210.02061 * 28 27 17 52 52 H 1.08991 * 109.47237 * 330.02091 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 8 4.1293 0.6404 -0.9120 7 6 5.5566 0.5752 -0.8854 8 7 1.6524 2.0974 -1.2518 9 6 0.4351 2.6643 -1.3670 10 8 -0.3396 2.6319 -0.4345 11 6 0.0367 3.3385 -2.6545 12 6 -1.3826 3.8941 -2.5213 13 6 -1.7813 4.5678 -3.8091 14 6 -2.4175 3.9570 -4.8946 15 6 -2.8246 2.5085 -4.9796 16 7 -2.5983 4.8604 -5.8236 17 7 -2.0815 6.0764 -5.3581 18 6 -2.0791 7.3473 -6.0867 19 6 -3.3432 8.1067 -5.7762 20 1 -4.0751 7.6850 -5.1031 21 6 -3.5627 9.3427 -6.3466 22 7 -2.6714 9.8563 -7.1660 23 14 -5.1261 10.2873 -5.9558 24 1 -4.8989 11.1514 -4.7696 25 1 -5.4981 11.1318 -7.1192 26 1 -6.2241 9.3300 -5.6677 27 6 -1.5805 5.8688 -4.1223 28 6 -0.9199 6.9020 -3.2463 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9355 2.4656 0.0366 35 1 3.8499 1.0377 1.0961 36 1 5.9682 1.5784 -0.9959 37 1 5.8833 0.1508 0.0638 38 1 5.9069 -0.0531 -1.7044 39 1 2.2720 2.1231 -1.9978 40 1 0.0680 2.6144 -3.4686 41 1 0.7281 4.1540 -2.8668 42 1 -1.4144 4.6182 -1.7071 43 1 -2.0738 3.0784 -2.3093 44 1 -2.0075 1.9259 -5.4052 45 1 -3.0545 2.1365 -3.9812 46 1 -3.7060 2.4155 -5.6139 47 1 -2.0264 7.1519 -7.1578 48 1 -1.2158 7.9390 -5.7824 49 1 -2.8260 10.7257 -7.5676 50 1 -1.6730 7.3869 -2.6252 51 1 -0.1798 6.4181 -2.6088 52 1 -0.4291 7.6479 -3.8712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151011534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:11 Heat of formation + Delta-G solvation = -60.169010 kcal Electronic energy + Delta-G solvation = -29476.336769 eV Core-core repulsion = 25475.795527 eV Total energy + Delta-G solvation = -4000.541242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14346 -40.94891 -38.94405 -36.50415 -36.02457 -34.80978 -34.18905 -33.26920 -31.62137 -30.53226 -30.15411 -28.08109 -27.61110 -27.03831 -25.36252 -24.39141 -23.84099 -21.73874 -21.21024 -20.29777 -20.12149 -18.82301 -18.05490 -17.71708 -17.25601 -16.98088 -16.59934 -16.29393 -16.18864 -16.01644 -15.72536 -15.21473 -14.91647 -14.63343 -14.43811 -14.37535 -14.02188 -13.88868 -13.75526 -13.63956 -13.44929 -13.32411 -13.25874 -13.15977 -13.01050 -12.84342 -12.72210 -12.62053 -12.57658 -12.39412 -12.22980 -12.19141 -11.86238 -11.80781 -11.71314 -11.67368 -11.13766 -10.75274 -10.70677 -10.56308 -9.89013 -9.83041 -9.00827 -8.35231 -6.52900 1.18574 1.35129 1.36284 1.47806 1.80389 1.90695 1.95214 2.32772 2.37418 2.87633 2.94020 3.75728 3.84969 3.94001 4.01796 4.05473 4.25324 4.28675 4.31002 4.38559 4.45068 4.49638 4.58178 4.62329 4.64403 4.65538 4.67387 4.73472 4.75040 4.83813 4.86456 4.88023 4.92336 4.94758 4.99322 5.04253 5.04997 5.12953 5.14512 5.30101 5.34765 5.46852 5.50451 5.53458 5.57325 5.66565 5.80106 6.06753 6.22746 6.32769 6.62431 6.69247 7.12651 7.18364 7.41442 8.70687 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.002131 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.639801 B =13137.002317 C =13567.414019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.146 3.854 4 H 0.089 0.911 5 C 0.057 3.943 6 O -0.405 6.405 7 C 0.027 3.973 8 N -0.716 5.716 9 C 0.518 3.482 10 O -0.568 6.568 11 C -0.127 4.127 12 C -0.002 4.002 13 C -0.257 4.257 14 C 0.053 3.947 15 C -0.062 4.062 16 N -0.351 5.351 17 N -0.356 5.356 18 C 0.275 3.725 19 C -0.552 4.552 20 H 0.046 0.954 21 C 0.021 3.979 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.277 1.277 27 C 0.077 3.923 28 C -0.082 4.082 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.412 0.588 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.019 0.981 48 H 0.047 0.953 49 H 0.274 0.726 50 H 0.075 0.925 51 H 0.106 0.894 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.724 -18.930 15.994 29.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.042 3.958 4 H 0.107 0.893 5 C -0.020 4.020 6 O -0.324 6.324 7 C -0.069 4.069 8 N -0.368 5.368 9 C 0.306 3.694 10 O -0.448 6.448 11 C -0.167 4.167 12 C -0.041 4.041 13 C -0.269 4.269 14 C -0.111 4.111 15 C -0.121 4.121 16 N -0.175 5.175 17 N -0.136 5.136 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.065 0.935 21 C -0.180 4.180 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.202 1.202 27 C -0.052 4.052 28 C -0.140 4.140 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.248 0.752 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.083 0.917 47 H 0.037 0.963 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.125 0.875 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.668 -18.506 15.138 28.585 hybrid contribution -0.155 0.932 0.148 0.956 sum 15.512 -17.574 15.286 27.985 Atomic orbital electron populations 1.21769 0.96168 1.00420 1.01628 1.21793 0.95422 0.95835 1.03020 1.21139 0.93038 0.93889 0.87771 0.89271 1.22843 0.91722 0.95512 0.91963 1.87863 1.21523 1.70828 1.52183 1.22888 0.79683 1.01696 1.02674 1.45995 1.16563 1.57150 1.17125 1.20867 0.81320 0.77510 0.89727 1.90694 1.51986 1.60249 1.41824 1.21624 0.98293 1.01636 0.95119 1.19344 0.94796 0.98742 0.91192 1.19743 1.14554 0.92520 1.00036 1.22778 0.98796 0.97463 0.92096 1.20202 1.01951 0.86186 1.03748 1.77205 1.23547 0.91151 1.25565 1.48997 1.43221 1.08344 1.13023 1.19119 0.97819 0.76119 0.91342 1.21424 1.04817 1.03436 1.29377 0.93548 1.25754 1.00434 0.97725 0.94067 1.70003 1.36475 1.18877 1.30259 0.85356 0.78475 0.78161 0.78505 1.18814 1.19774 1.20213 1.21470 0.99069 0.97131 0.87575 1.20437 1.00329 0.95693 0.97550 0.93911 0.93071 0.93657 0.91358 0.90247 0.91840 0.90318 0.93382 0.93113 0.88942 0.75162 0.87903 0.88108 0.91752 0.91179 0.89146 0.89061 0.91741 0.96339 0.93499 0.91726 0.90586 0.87504 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.51 71.98 0.61 -2.15 16 2 C -0.12 -1.84 5.33 30.60 0.16 -1.68 16 3 C 0.15 2.10 2.66 44.99 0.12 2.22 16 4 H 0.09 1.51 7.58 -2.39 -0.02 1.49 16 5 C 0.06 0.57 5.68 71.98 0.41 0.97 16 6 O -0.40 -4.81 9.65 -148.98 -1.44 -6.25 16 7 C 0.03 0.19 11.01 113.37 1.25 1.44 16 8 N -0.72 -11.20 5.01 -442.55 -2.22 -13.42 16 9 C 0.52 10.85 6.40 87.65 0.56 11.41 16 10 O -0.57 -15.67 13.12 -3.01 -0.04 -15.71 16 11 C -0.13 -2.60 5.68 29.85 0.17 -2.43 16 12 C 0.00 -0.05 4.41 29.85 0.13 0.08 16 13 C -0.26 -9.00 5.35 -20.14 -0.11 -9.10 16 14 C 0.05 2.02 7.22 43.10 0.31 2.34 16 15 C -0.06 -1.70 10.26 71.24 0.73 -0.97 16 16 N -0.35 -16.72 12.58 -47.38 -0.60 -17.32 16 17 N -0.36 -17.30 3.60 -338.41 -1.22 -18.52 16 18 C 0.28 14.92 6.00 85.64 0.51 15.43 16 19 C -0.55 -31.81 9.39 25.60 0.24 -31.56 16 20 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 21 C 0.02 1.18 5.46 84.66 0.46 1.64 16 22 N -0.92 -52.75 13.29 21.45 0.28 -52.46 16 23 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 27 C 0.08 3.09 6.93 41.41 0.29 3.38 16 28 C -0.08 -2.66 9.72 71.24 0.69 -1.97 16 29 H 0.04 0.97 5.64 -2.39 -0.01 0.96 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.04 0.99 7.85 -2.39 -0.02 0.97 16 32 H 0.07 1.09 7.73 -2.39 -0.02 1.07 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.41 5.14 8.38 -92.70 -0.78 4.36 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.80 7.75 -2.39 -0.02 1.78 16 43 H 0.07 1.90 7.21 -2.39 -0.02 1.88 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.09 2.08 7.25 -2.39 -0.02 2.07 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 48 H 0.05 2.51 7.04 -2.39 -0.02 2.50 16 49 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 50 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.11 2.62 7.79 -2.38 -0.02 2.60 16 52 H 0.06 2.15 7.07 -2.39 -0.02 2.13 16 Total: -1.00 -72.36 421.39 3.47 -68.89 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.12 Total: 19.71 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 6.54 Total: -10.94 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -3.75 Total: -101.72 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.48 Total: -21.96 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.36 3.47 -68.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151011534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.717 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds