Wall clock time and date at job start Tue Mar 31 2020 20:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 6 6 O 1.42897 * 109.47388 * 305.00475 * 5 3 2 7 7 C 1.42898 * 113.99961 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 9 9 C 1.34773 * 120.00316 * 275.00099 * 8 3 2 10 10 O 1.21283 * 120.00233 * 0.02562 * 9 8 3 11 11 C 1.50697 * 120.00012 * 179.97438 * 9 8 3 12 12 C 1.53001 * 109.47362 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47698 * 180.02562 * 12 11 9 14 14 C 1.39873 * 126.03489 * 269.69895 * 13 12 11 15 15 C 1.50700 * 125.90452 * 359.97438 * 14 13 12 16 16 N 1.30841 * 108.20063 * 179.81512 * 14 13 12 17 17 N 1.40092 * 108.20522 * 0.43540 * 16 14 13 18 18 C 1.46491 * 126.03893 * 179.74594 * 17 16 14 19 19 C 1.50700 * 109.46814 * 269.97133 * 18 17 16 20 20 H 1.07996 * 120.00189 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99959 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00049 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00105 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46928 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47103 * 120.00100 * 23 21 19 26 26 H 1.48497 * 109.47070 * 240.00374 * 23 21 19 27 27 C 1.34946 * 107.92019 * 359.71801 * 17 16 14 28 28 C 1.50708 * 126.12303 * 179.97438 * 27 17 16 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.08997 * 109.46928 * 65.00743 * 5 3 2 35 35 H 1.08999 * 109.47047 * 184.99963 * 5 3 2 36 36 H 1.09001 * 109.47596 * 59.99616 * 7 6 5 37 37 H 1.09000 * 109.46906 * 180.02562 * 7 6 5 38 38 H 1.09005 * 109.46949 * 299.99397 * 7 6 5 39 39 H 0.97003 * 119.99976 * 95.00125 * 8 3 2 40 40 H 1.08995 * 109.47634 * 300.00249 * 11 9 8 41 41 H 1.09010 * 109.46880 * 60.00413 * 11 9 8 42 42 H 1.09000 * 109.47300 * 300.00804 * 12 11 9 43 43 H 1.09001 * 109.46934 * 60.00060 * 12 11 9 44 44 H 1.08998 * 109.46865 * 90.00140 * 15 14 13 45 45 H 1.08998 * 109.47316 * 210.01003 * 15 14 13 46 46 H 1.09000 * 109.46675 * 330.00778 * 15 14 13 47 47 H 1.08997 * 109.47655 * 29.96887 * 18 17 16 48 48 H 1.08997 * 109.47691 * 149.97481 * 18 17 16 49 49 H 0.96998 * 119.99872 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.46872 * 270.02293 * 28 27 17 51 51 H 1.08997 * 109.47277 * 30.02852 * 28 27 17 52 52 H 1.09000 * 109.46620 * 150.02528 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 4.1294 0.6404 0.9120 7 6 5.5566 0.5752 0.8855 8 7 1.6524 2.0974 1.2518 9 6 0.4351 2.6643 1.3670 10 8 -0.3397 2.6319 0.4345 11 6 0.0363 3.3375 2.6549 12 6 -1.3829 3.8934 2.5217 13 6 -1.7816 4.5672 3.8093 14 6 -2.4238 3.9578 4.8923 15 6 -2.8383 2.5113 4.9740 16 7 -2.5994 4.8600 5.8236 17 7 -2.0827 6.0760 5.3579 18 6 -2.0805 7.3469 6.0864 19 6 -3.3447 8.1062 5.7757 20 1 -4.0766 7.6840 5.1031 21 6 -3.5673 9.3393 6.3508 22 7 -2.6761 9.8533 7.1702 23 14 -5.1339 10.2808 5.9650 24 1 -5.9663 9.4914 5.0220 25 1 -5.8935 10.5131 7.2197 26 1 -4.7877 11.5859 5.3471 27 6 -1.5868 5.8696 4.1200 28 6 -0.9335 6.9047 3.2406 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9355 2.4655 -0.0366 36 1 5.9683 1.5784 0.9959 37 1 5.9069 -0.0538 1.7039 38 1 5.8833 0.1508 -0.0639 39 1 2.2719 2.1231 1.9979 40 1 0.0673 2.6129 3.4685 41 1 0.7277 4.1529 2.8680 42 1 -1.4145 4.6180 1.7080 43 1 -2.0741 3.0778 2.3088 44 1 -2.0254 1.9240 5.4009 45 1 -3.7220 2.4217 5.6058 46 1 -3.0674 2.1420 3.9744 47 1 -2.0280 7.1518 7.1575 48 1 -1.2173 7.9388 5.7822 49 1 -2.8329 10.7207 7.5750 50 1 -1.6912 7.3875 2.6235 51 1 -0.4415 7.6520 3.8630 52 1 -0.1955 6.4229 2.5993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151011577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:13 Heat of formation + Delta-G solvation = -60.233811 kcal Electronic energy + Delta-G solvation = -29474.737726 eV Core-core repulsion = 25474.193673 eV Total energy + Delta-G solvation = -4000.544052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14292 -40.94809 -38.94444 -36.50415 -36.02537 -34.80867 -34.18922 -33.27005 -31.62294 -30.53357 -30.15472 -28.07979 -27.61242 -27.03850 -25.36387 -24.39213 -23.84168 -21.73916 -21.21057 -20.29730 -20.11982 -18.82725 -18.05555 -17.71755 -17.25697 -16.98114 -16.59902 -16.29404 -16.18728 -16.01635 -15.72520 -15.21502 -14.91691 -14.63268 -14.43970 -14.38140 -14.02311 -13.88924 -13.75366 -13.63920 -13.44869 -13.32492 -13.25857 -13.16048 -13.01123 -12.84368 -12.71939 -12.62482 -12.57938 -12.39454 -12.23878 -12.19150 -11.86259 -11.80724 -11.69307 -11.67284 -11.13886 -10.75869 -10.70637 -10.56300 -9.89048 -9.82962 -9.00872 -8.35445 -6.53088 1.18510 1.34029 1.36101 1.48668 1.80340 1.90341 1.95779 2.32586 2.37351 2.87614 2.93773 3.75715 3.84937 3.94055 4.01797 4.05480 4.25334 4.28637 4.31001 4.38647 4.45049 4.49651 4.58266 4.62289 4.64396 4.65593 4.67443 4.73443 4.75077 4.83857 4.86499 4.88086 4.92286 4.94757 4.99332 5.04249 5.04989 5.12951 5.14546 5.30091 5.34828 5.46901 5.50540 5.53443 5.57321 5.66515 5.79967 6.06721 6.22763 6.32759 6.62585 6.69217 7.12581 7.18313 7.41414 8.70670 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002130 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.298073 B =13141.714485 C =13573.852455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.146 3.854 4 H 0.089 0.911 5 C 0.057 3.943 6 O -0.405 6.405 7 C 0.027 3.973 8 N -0.716 5.716 9 C 0.518 3.482 10 O -0.568 6.568 11 C -0.127 4.127 12 C -0.002 4.002 13 C -0.257 4.257 14 C 0.053 3.947 15 C -0.062 4.062 16 N -0.351 5.351 17 N -0.356 5.356 18 C 0.275 3.725 19 C -0.551 4.551 20 H 0.046 0.954 21 C 0.021 3.979 22 N -0.918 5.918 23 Si 0.972 3.028 24 H -0.275 1.275 25 H -0.274 1.274 26 H -0.265 1.265 27 C 0.077 3.923 28 C -0.082 4.082 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.412 0.588 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.019 0.981 48 H 0.047 0.953 49 H 0.274 0.726 50 H 0.075 0.925 51 H 0.062 0.938 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.688 -18.934 -15.981 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.042 3.958 4 H 0.107 0.893 5 C -0.020 4.020 6 O -0.324 6.324 7 C -0.069 4.069 8 N -0.368 5.368 9 C 0.306 3.694 10 O -0.448 6.448 11 C -0.167 4.167 12 C -0.041 4.041 13 C -0.269 4.269 14 C -0.111 4.111 15 C -0.121 4.121 16 N -0.175 5.175 17 N -0.136 5.136 18 C 0.156 3.844 19 C -0.590 4.590 20 H 0.064 0.936 21 C -0.180 4.180 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.200 1.200 25 H -0.199 1.199 26 H -0.190 1.190 27 C -0.052 4.052 28 C -0.140 4.140 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.248 0.752 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.037 0.963 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.081 0.919 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.637 -18.513 -15.126 28.567 hybrid contribution -0.158 0.934 -0.138 0.957 sum 15.479 -17.580 -15.264 27.958 Atomic orbital electron populations 1.21768 0.96166 1.00420 1.01628 1.21791 0.95423 0.95833 1.03022 1.21141 0.93039 0.93890 0.87768 0.89270 1.22840 0.91721 0.95514 0.91965 1.87861 1.21524 1.70827 1.52183 1.22888 0.79682 1.01691 1.02678 1.45994 1.16568 1.57140 1.17126 1.20869 0.81322 0.77506 0.89732 1.90696 1.51982 1.60245 1.41839 1.21624 0.98289 1.01641 0.95107 1.19343 0.94804 0.98743 0.91188 1.19740 1.14512 0.92483 1.00131 1.22779 0.98733 0.97495 0.92122 1.20201 1.01895 0.86236 1.03754 1.77207 1.23514 0.91223 1.25519 1.48996 1.43401 1.08328 1.12861 1.19123 0.97832 0.76121 0.91352 1.21452 1.04746 1.03552 1.29202 0.93555 1.25755 1.00452 0.97718 0.94068 1.70008 1.36378 1.19015 1.30242 0.85305 0.78498 0.78360 0.78292 1.19953 1.19927 1.19009 1.21466 0.99121 0.97097 0.87552 1.20436 1.00399 0.95662 0.97508 0.93912 0.93069 0.93656 0.91359 0.90245 0.90317 0.91841 0.93374 0.88941 0.93122 0.75163 0.87907 0.88116 0.91760 0.91174 0.89156 0.91727 0.89063 0.96320 0.93494 0.91727 0.90589 0.91875 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.51 71.98 0.61 -2.15 16 2 C -0.12 -1.84 5.33 30.59 0.16 -1.68 16 3 C 0.15 2.11 2.66 44.99 0.12 2.22 16 4 H 0.09 1.51 7.58 -2.39 -0.02 1.49 16 5 C 0.06 0.57 5.68 71.98 0.41 0.97 16 6 O -0.40 -4.82 9.65 -148.98 -1.44 -6.26 16 7 C 0.03 0.19 11.01 113.37 1.25 1.44 16 8 N -0.72 -11.21 5.01 -442.54 -2.22 -13.43 16 9 C 0.52 10.86 6.40 87.66 0.56 11.42 16 10 O -0.57 -15.68 13.12 -3.04 -0.04 -15.72 16 11 C -0.13 -2.61 5.68 29.85 0.17 -2.44 16 12 C 0.00 -0.05 4.41 29.85 0.13 0.08 16 13 C -0.26 -9.01 5.35 -20.15 -0.11 -9.11 16 14 C 0.05 2.03 7.22 43.10 0.31 2.34 16 15 C -0.06 -1.70 10.26 71.24 0.73 -0.97 16 16 N -0.35 -16.72 12.58 -47.38 -0.60 -17.31 16 17 N -0.36 -17.30 3.59 -338.43 -1.22 -18.52 16 18 C 0.28 14.90 6.00 85.63 0.51 15.41 16 19 C -0.55 -31.74 9.39 25.60 0.24 -31.50 16 20 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 21 C 0.02 1.17 5.46 84.65 0.46 1.63 16 22 N -0.92 -52.74 13.29 21.45 0.28 -52.46 16 23 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C 0.08 3.10 6.93 41.41 0.29 3.39 16 28 C -0.08 -2.67 9.72 71.24 0.69 -1.97 16 29 H 0.04 0.97 5.64 -2.39 -0.01 0.96 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.99 7.85 -2.38 -0.02 0.97 16 32 H 0.07 1.09 7.73 -2.39 -0.02 1.07 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 39 H 0.41 5.15 8.38 -92.71 -0.78 4.37 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.06 1.80 7.73 -2.39 -0.02 1.78 16 43 H 0.07 1.90 7.21 -2.39 -0.02 1.88 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.09 2.09 7.25 -2.39 -0.02 2.07 16 47 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 48 H 0.05 2.52 7.05 -2.39 -0.02 2.50 16 49 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 50 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.06 2.15 7.08 -2.39 -0.02 2.13 16 52 H 0.11 2.62 7.77 -2.39 -0.02 2.61 16 Total: -1.00 -72.38 421.34 3.47 -68.91 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.12 Total: 19.64 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 6.54 Total: -10.91 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -3.75 Total: -101.72 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -1.48 Total: -21.98 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.38 3.47 -68.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151011577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.674 kcal (2) G-P(sol) polarization free energy of solvation -72.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds