Wall clock time and date at job start Tue Mar 31 2020 20:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.09001 * 109.46931 * 54.99954 * 3 2 1 5 5 C 1.52998 * 109.46995 * 174.99840 * 3 2 1 6 6 C 1.52995 * 109.47386 * 185.00062 * 5 3 2 7 7 O 1.42897 * 109.47619 * 180.02562 * 6 5 3 8 8 N 1.46497 * 109.46808 * 294.99828 * 3 2 1 9 9 C 1.34780 * 120.00031 * 85.00504 * 8 3 2 10 10 O 1.21273 * 119.99822 * 359.97438 * 9 8 3 11 11 C 1.50695 * 119.99639 * 179.97438 * 9 8 3 12 12 C 1.52999 * 109.46918 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47451 * 180.02562 * 12 11 9 14 14 C 1.39866 * 126.04287 * 89.96846 * 13 12 11 15 15 C 1.50705 * 125.89802 * 0.03191 * 14 13 12 16 16 N 1.30837 * 108.20458 * 180.02562 * 14 13 12 17 17 N 1.40086 * 108.20700 * 0.02562 * 16 14 13 18 18 C 1.46491 * 126.04129 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46957 * 90.02579 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.34955 * 107.92007 * 0.26426 * 17 16 14 28 28 C 1.50708 * 126.12162 * 179.73553 * 27 17 16 29 29 H 1.08995 * 109.47080 * 60.00305 * 1 2 3 30 30 H 1.09008 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47219 * 300.00303 * 1 2 3 32 32 H 1.08999 * 109.47219 * 239.99697 * 2 1 3 33 33 H 1.09000 * 109.46618 * 119.99717 * 2 1 3 34 34 H 1.09007 * 109.47311 * 305.00017 * 5 3 2 35 35 H 1.09003 * 109.47038 * 65.00048 * 5 3 2 36 36 H 1.09007 * 109.46859 * 300.00232 * 6 5 3 37 37 H 1.09008 * 109.47261 * 59.99558 * 6 5 3 38 38 H 0.96699 * 114.00021 * 179.97438 * 7 6 5 39 39 H 0.97005 * 119.99776 * 264.99162 * 8 3 2 40 40 H 1.08997 * 109.47366 * 60.00063 * 11 9 8 41 41 H 1.09000 * 109.47755 * 299.99776 * 11 9 8 42 42 H 1.09001 * 109.47356 * 60.00206 * 12 11 9 43 43 H 1.09002 * 109.47319 * 299.99905 * 12 11 9 44 44 H 1.08999 * 109.46544 * 269.99193 * 15 14 13 45 45 H 1.09000 * 109.47294 * 29.99156 * 15 14 13 46 46 H 1.08993 * 109.46794 * 149.99571 * 15 14 13 47 47 H 1.09004 * 109.47166 * 330.02845 * 18 17 16 48 48 H 1.08994 * 109.47507 * 210.02551 * 18 17 16 49 49 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.47042 * 90.02700 * 28 27 17 51 51 H 1.09007 * 109.46511 * 210.02061 * 28 27 17 52 52 H 1.08991 * 109.47237 * 330.02091 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 6 4.0645 2.8850 0.2512 7 8 5.4887 2.8868 0.3680 8 7 1.6524 2.0974 -1.2518 9 6 0.4351 2.6643 -1.3670 10 8 -0.3396 2.6319 -0.4345 11 6 0.0367 3.3385 -2.6545 12 6 -1.3826 3.8941 -2.5213 13 6 -1.7813 4.5678 -3.8091 14 6 -2.4175 3.9570 -4.8946 15 6 -2.8246 2.5085 -4.9796 16 7 -2.5983 4.8604 -5.8236 17 7 -2.0815 6.0764 -5.3581 18 6 -2.0791 7.3473 -6.0867 19 6 -3.3432 8.1067 -5.7762 20 1 -4.0751 7.6850 -5.1031 21 6 -3.5627 9.3427 -6.3466 22 7 -2.6714 9.8563 -7.1660 23 14 -5.1261 10.2873 -5.9558 24 1 -4.8989 11.1514 -4.7696 25 1 -5.4981 11.1318 -7.1192 26 1 -6.2241 9.3300 -5.6677 27 6 -1.5805 5.8688 -4.1223 28 6 -0.9199 6.9020 -3.2463 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8570 0.8800 1.0114 35 1 4.0029 0.9836 -0.7596 36 1 3.7722 3.4493 -0.6345 37 1 3.6263 3.3458 1.1366 38 1 5.8754 3.7692 0.4511 39 1 2.2720 2.1231 -1.9978 40 1 0.0680 2.6144 -3.4686 41 1 0.7281 4.1540 -2.8668 42 1 -1.4144 4.6182 -1.7071 43 1 -2.0738 3.0784 -2.3093 44 1 -2.0075 1.9259 -5.4052 45 1 -3.0545 2.1365 -3.9812 46 1 -3.7060 2.4155 -5.6139 47 1 -2.0264 7.1519 -7.1578 48 1 -1.2158 7.9390 -5.7824 49 1 -2.8260 10.7257 -7.5676 50 1 -1.6730 7.3869 -2.6252 51 1 -0.1798 6.4181 -2.6088 52 1 -0.4291 7.6479 -3.8712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159276295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:10 Heat of formation + Delta-G solvation = -51.364831 kcal Electronic energy + Delta-G solvation = -29475.192967 eV Core-core repulsion = 25475.033503 eV Total energy + Delta-G solvation = -4000.159464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66412 -40.13243 -37.71528 -36.20944 -34.38340 -33.42537 -32.50947 -32.49542 -31.34829 -30.15191 -28.97060 -26.96439 -25.93365 -25.85431 -23.86185 -22.29082 -22.21911 -21.10506 -20.49700 -18.81554 -18.64749 -17.88109 -17.11007 -16.72101 -16.47354 -15.94725 -15.47643 -15.32336 -14.66140 -14.57836 -14.37012 -14.14139 -13.90085 -13.67815 -13.31918 -13.06134 -12.96499 -12.89528 -12.52233 -12.45563 -12.37331 -12.21990 -12.03951 -11.80964 -11.74149 -11.65302 -11.47220 -11.33954 -11.31217 -11.26956 -11.04675 -10.97050 -10.81606 -10.70381 -10.40296 -10.26803 -9.84915 -9.73346 -9.60043 -9.19928 -8.66065 -8.19028 -7.47955 -6.27799 -4.34994 2.61441 2.74438 2.99942 3.19794 3.26447 3.31885 3.40604 3.60919 3.65378 4.28545 4.51712 4.53908 4.65748 4.80765 4.90515 4.95828 5.05937 5.07809 5.19599 5.24627 5.26684 5.32961 5.35829 5.40241 5.52910 5.57357 5.64205 5.70628 5.76360 5.78910 5.81780 5.93522 5.94186 5.97172 6.01128 6.05723 6.22357 6.24861 6.31575 6.35636 6.46020 6.54468 6.84791 7.01786 7.10989 7.18207 7.34164 7.51071 7.65184 7.87132 8.04924 8.16522 8.66019 8.74583 9.31465 10.79808 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.002258 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.218151 B =12397.821552 C =13376.879014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.146 3.854 4 H 0.090 0.910 5 C -0.127 4.127 6 C 0.074 3.926 7 O -0.577 6.577 8 N -0.733 5.733 9 C 0.514 3.486 10 O -0.533 6.533 11 C -0.135 4.135 12 C -0.009 4.009 13 C -0.269 4.269 14 C 0.050 3.950 15 C -0.064 4.064 16 N -0.297 5.297 17 N -0.325 5.325 18 C 0.257 3.743 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.093 3.907 28 C -0.085 4.085 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.381 0.619 39 H 0.399 0.601 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.268 0.732 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.812 -16.186 13.967 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.042 3.958 4 H 0.108 0.892 5 C -0.165 4.165 6 C -0.003 4.003 7 O -0.383 6.383 8 N -0.387 5.387 9 C 0.301 3.699 10 O -0.409 6.409 11 C -0.175 4.175 12 C -0.048 4.048 13 C -0.281 4.281 14 C -0.114 4.114 15 C -0.123 4.123 16 N -0.121 5.121 17 N -0.105 5.105 18 C 0.139 3.861 19 C -0.573 4.573 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.039 4.039 28 C -0.144 4.144 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.229 0.771 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.095 0.905 51 H 0.089 0.911 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.715 -16.295 13.198 24.523 hybrid contribution -0.104 1.214 0.429 1.292 sum 12.611 -15.081 13.627 23.920 Atomic orbital electron populations 1.21806 0.94519 1.00609 1.03356 1.21933 0.97373 0.95603 1.02159 1.20943 0.92958 0.93834 0.88098 0.89202 1.21812 0.94078 0.96560 1.04078 1.22186 0.80828 0.97209 1.00110 1.86441 1.20597 1.34323 1.96952 1.46225 1.17321 1.58707 1.16419 1.20982 0.80934 0.77602 0.90332 1.90703 1.50849 1.58496 1.40823 1.21763 1.00182 1.01004 0.94554 1.19379 0.92822 0.99086 0.93555 1.19355 1.16150 0.93310 0.99258 1.21943 1.00557 0.96090 0.92805 1.20023 1.01146 0.88954 1.02174 1.77276 1.21165 0.90443 1.23220 1.49242 1.40722 1.08868 1.11625 1.19647 0.98698 0.74838 0.92891 1.21305 1.04252 1.02620 1.29154 0.91812 1.24930 0.97325 0.97059 0.94495 1.69920 1.34906 1.18369 1.29823 0.86355 0.82736 0.79596 0.78023 1.20302 1.20840 1.19662 1.20776 0.99253 0.95433 0.88399 1.20344 0.99838 0.96329 0.97866 0.92136 0.93652 0.92149 0.91839 0.91288 0.89739 0.90588 0.93289 0.93511 0.77137 0.76661 0.89082 0.89212 0.91449 0.91301 0.91628 0.91246 0.91594 0.93092 0.93129 0.92261 0.90475 0.91147 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.51 37.16 0.32 -1.06 16 2 C -0.13 -0.96 5.61 -26.73 -0.15 -1.11 16 3 C 0.15 1.07 2.26 -67.93 -0.15 0.92 16 4 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 5 C -0.13 -0.78 5.12 -26.73 -0.14 -0.92 16 6 C 0.07 0.49 6.93 37.16 0.26 0.74 16 7 O -0.58 -4.19 13.66 -35.23 -0.48 -4.68 16 8 N -0.73 -5.56 4.48 -53.81 -0.24 -5.80 16 9 C 0.51 5.41 6.40 -10.99 -0.07 5.33 16 10 O -0.53 -7.32 13.12 5.56 0.07 -7.25 16 11 C -0.13 -1.44 5.68 -27.89 -0.16 -1.60 16 12 C -0.01 -0.13 4.41 -27.88 -0.12 -0.25 16 13 C -0.27 -4.71 5.35 -105.05 -0.56 -5.27 16 14 C 0.05 0.95 7.22 -82.40 -0.59 0.35 16 15 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 16 N -0.30 -6.80 12.58 33.67 0.42 -6.38 16 17 N -0.33 -7.54 3.60 -58.31 -0.21 -7.75 16 18 C 0.26 6.57 6.00 -5.20 -0.03 6.54 16 19 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 23 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.09 1.82 6.93 -82.26 -0.57 1.25 16 28 C -0.09 -1.38 9.72 36.01 0.35 -1.03 16 29 H 0.06 0.67 5.64 -51.93 -0.29 0.38 16 30 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.30 7.75 -51.92 -0.40 -0.10 16 37 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 38 H 0.38 1.24 9.12 45.56 0.42 1.66 16 39 H 0.40 2.23 8.60 -40.82 -0.35 1.88 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 43 H 0.07 0.97 7.21 -51.93 -0.37 0.59 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.85 7.25 -51.93 -0.38 0.48 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.05 1.28 7.04 -51.93 -0.37 0.91 16 49 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 52 H 0.07 1.19 7.07 -51.93 -0.37 0.83 16 LS Contribution 421.33 15.07 6.35 6.35 Total: -1.00 -33.30 421.33 -8.39 -41.69 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.34 Total: 2.06 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.68 Total: -10.06 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.71 Total: -44.28 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.41 Total: -11.93 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.30 -8.39 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159276295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.673 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds