Wall clock time and date at job start Tue Mar 31 2020 20:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 6 6 C 1.52999 * 109.46957 * 174.99793 * 5 3 2 7 7 O 1.42902 * 109.47205 * 180.02562 * 6 5 3 8 8 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 9 9 C 1.34777 * 120.00429 * 275.00047 * 8 3 2 10 10 O 1.21283 * 119.99304 * 0.02562 * 9 8 3 11 11 C 1.50695 * 120.00578 * 180.02562 * 9 8 3 12 12 C 1.53000 * 109.47449 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47147 * 179.97438 * 12 11 9 14 14 C 1.39871 * 126.04156 * 269.69228 * 13 12 11 15 15 C 1.50695 * 125.89636 * 359.97438 * 14 13 12 16 16 N 1.30838 * 108.19886 * 179.81973 * 14 13 12 17 17 N 1.40080 * 108.20985 * 0.44072 * 16 14 13 18 18 C 1.46494 * 126.03949 * 179.73911 * 17 16 14 19 19 C 1.50698 * 109.47197 * 269.97285 * 18 17 16 20 20 H 1.08001 * 119.99983 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99904 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00103 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99857 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47627 * 59.99540 * 23 21 19 25 25 H 1.48501 * 109.47507 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46954 * 299.99859 * 23 21 19 27 27 C 1.34957 * 107.92472 * 359.71816 * 17 16 14 28 28 C 1.50695 * 126.12507 * 179.97438 * 27 17 16 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.08995 * 109.47091 * 294.99898 * 5 3 2 35 35 H 1.08999 * 109.47368 * 54.99889 * 5 3 2 36 36 H 1.09005 * 109.47162 * 299.99937 * 6 5 3 37 37 H 1.08999 * 109.47003 * 59.99872 * 6 5 3 38 38 H 0.96693 * 113.99645 * 180.02562 * 7 6 5 39 39 H 0.97001 * 120.00176 * 95.00254 * 8 3 2 40 40 H 1.08995 * 109.47428 * 300.00429 * 11 9 8 41 41 H 1.09008 * 109.47339 * 60.00017 * 11 9 8 42 42 H 1.09002 * 109.47248 * 300.00284 * 12 11 9 43 43 H 1.08995 * 109.46598 * 60.00169 * 12 11 9 44 44 H 1.09002 * 109.47024 * 90.00088 * 15 14 13 45 45 H 1.09003 * 109.47041 * 210.00072 * 15 14 13 46 46 H 1.09001 * 109.47323 * 330.00058 * 15 14 13 47 47 H 1.09002 * 109.47218 * 29.97643 * 18 17 16 48 48 H 1.09003 * 109.47506 * 149.97445 * 18 17 16 49 49 H 0.96999 * 120.00035 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.47180 * 270.01784 * 28 27 17 51 51 H 1.08997 * 109.47532 * 30.02581 * 28 27 17 52 52 H 1.09001 * 109.46576 * 150.02645 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 6 4.0645 2.8850 -0.2511 7 8 5.4887 2.8867 -0.3691 8 7 1.6524 2.0975 1.2517 9 6 0.4351 2.6644 1.3669 10 8 -0.3396 2.6319 0.4343 11 6 0.0366 3.3387 2.6543 12 6 -1.3822 3.8955 2.5206 13 6 -1.7810 4.5692 3.8083 14 6 -2.4240 3.9602 4.8909 15 6 -2.8395 2.5140 4.9721 16 7 -2.5993 4.8624 5.8222 17 7 -2.0817 6.0780 5.3569 18 6 -2.0791 7.3489 6.0856 19 6 -3.3427 8.1089 5.7744 20 1 -4.0746 7.6872 5.1015 21 6 -3.5642 9.3427 6.3488 22 7 -2.6731 9.8559 7.1686 23 14 -5.1308 10.2844 5.9636 24 1 -6.3073 9.4790 6.3786 25 1 -5.1282 11.5728 6.7021 26 1 -5.2026 10.5500 4.5043 27 6 -1.5854 5.8716 4.1190 28 6 -0.9313 6.9063 3.2401 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 4.0029 0.9836 0.7597 35 1 3.8571 0.8800 -1.0112 36 1 3.6264 3.3457 -1.1366 37 1 3.7722 3.4493 0.6344 38 1 5.8753 3.7691 -0.4523 39 1 2.2719 2.1232 1.9977 40 1 0.0680 2.6148 3.4685 41 1 0.7280 4.1543 2.8665 42 1 -1.4132 4.6196 1.7064 43 1 -2.0738 3.0802 2.3082 44 1 -2.0271 1.9259 5.3991 45 1 -3.7235 2.4248 5.6037 46 1 -3.0686 2.1450 3.9723 47 1 -2.0270 7.1536 7.1567 48 1 -1.2153 7.9403 5.7817 49 1 -2.8292 10.7237 7.5729 50 1 -1.6885 7.3897 2.6227 51 1 -0.4390 7.6533 3.8628 52 1 -0.1934 6.4242 2.5990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159276453.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:12 Heat of formation + Delta-G solvation = -51.358443 kcal Electronic energy + Delta-G solvation = -29473.289875 eV Core-core repulsion = 25473.130688 eV Total energy + Delta-G solvation = -4000.159187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66283 -40.13167 -37.71447 -36.20876 -34.38183 -33.42419 -32.50954 -32.49477 -31.34818 -30.15321 -28.97049 -26.96204 -25.93293 -25.85319 -23.86112 -22.28973 -22.21923 -21.10520 -20.49663 -18.81382 -18.64551 -17.88077 -17.10968 -16.71977 -16.47376 -15.94585 -15.47470 -15.32268 -14.66084 -14.57762 -14.37425 -14.14086 -13.90069 -13.67700 -13.31805 -13.06100 -12.96356 -12.89466 -12.51695 -12.45215 -12.37300 -12.21962 -12.03872 -11.80864 -11.74145 -11.65012 -11.47190 -11.33544 -11.31152 -11.26687 -11.04798 -10.98654 -10.79647 -10.70574 -10.40301 -10.26751 -9.85050 -9.74912 -9.59967 -9.19881 -8.65534 -8.18912 -7.47968 -6.27520 -4.34909 2.61446 2.74431 2.99899 3.22157 3.25987 3.30095 3.40651 3.61002 3.65411 4.28583 4.51721 4.53990 4.65763 4.80809 4.90529 4.95866 5.06087 5.07853 5.19702 5.24681 5.26667 5.33235 5.35868 5.40303 5.52980 5.57396 5.64370 5.70700 5.76548 5.78908 5.81856 5.93633 5.94234 5.97181 6.01441 6.05820 6.22395 6.24921 6.31616 6.35907 6.46088 6.54596 6.84951 7.01799 7.11063 7.18245 7.34181 7.51109 7.65105 7.87298 8.04968 8.16555 8.65975 8.74453 9.31522 10.80044 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.002257 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.548570 B =12402.998961 C =13383.555524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.146 3.854 4 H 0.090 0.910 5 C -0.127 4.127 6 C 0.074 3.926 7 O -0.577 6.577 8 N -0.733 5.733 9 C 0.514 3.486 10 O -0.533 6.533 11 C -0.135 4.135 12 C -0.009 4.009 13 C -0.269 4.269 14 C 0.051 3.949 15 C -0.064 4.064 16 N -0.297 5.297 17 N -0.325 5.325 18 C 0.257 3.743 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.093 3.907 28 C -0.085 4.085 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.381 0.619 39 H 0.399 0.601 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.268 0.732 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.784 -16.168 -13.972 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.042 3.958 4 H 0.108 0.892 5 C -0.165 4.165 6 C -0.003 4.003 7 O -0.383 6.383 8 N -0.387 5.387 9 C 0.301 3.699 10 O -0.409 6.409 11 C -0.175 4.175 12 C -0.048 4.048 13 C -0.281 4.281 14 C -0.114 4.114 15 C -0.123 4.123 16 N -0.121 5.121 17 N -0.105 5.105 18 C 0.140 3.860 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.038 4.038 28 C -0.144 4.144 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.229 0.771 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.697 -16.274 -13.200 24.501 hybrid contribution -0.121 1.199 -0.425 1.278 sum 12.576 -15.074 -13.625 23.896 Atomic orbital electron populations 1.21806 0.94519 1.00609 1.03356 1.21933 0.97372 0.95603 1.02159 1.20943 0.92958 0.93834 0.88099 0.89203 1.21811 0.94077 0.96560 1.04078 1.22186 0.80829 0.97209 1.00108 1.86441 1.20609 1.34320 1.96942 1.46221 1.17323 1.58702 1.16419 1.20986 0.80934 0.77602 0.90333 1.90705 1.50854 1.58502 1.40820 1.21761 1.00184 1.00996 0.94547 1.19377 0.92838 0.99078 0.93548 1.19356 1.16092 0.93284 0.99365 1.21941 1.00471 0.96131 0.92840 1.20023 1.01106 0.88995 1.02174 1.77274 1.21123 0.90536 1.23186 1.49244 1.40880 1.08862 1.11479 1.19642 0.98683 0.74826 0.92884 1.21266 1.04264 1.02757 1.29139 0.91868 1.24925 0.97318 0.97040 0.94483 1.69906 1.34886 1.18547 1.29682 0.86412 0.82857 0.78779 0.78637 1.19942 1.20933 1.19934 1.20773 0.99302 0.95386 0.88370 1.20342 0.99902 0.96308 0.97821 0.93652 0.92144 0.92140 0.91842 0.91287 0.90589 0.89739 0.93517 0.93280 0.77140 0.76662 0.89079 0.89215 0.91452 0.91307 0.91633 0.91593 0.91243 0.93097 0.93133 0.92198 0.90469 0.90967 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.51 37.16 0.32 -1.06 16 2 C -0.13 -0.96 5.61 -26.73 -0.15 -1.11 16 3 C 0.15 1.07 2.26 -67.93 -0.15 0.92 16 4 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 5 C -0.13 -0.79 5.12 -26.73 -0.14 -0.92 16 6 C 0.07 0.49 6.93 37.16 0.26 0.74 16 7 O -0.58 -4.20 13.66 -35.23 -0.48 -4.68 16 8 N -0.73 -5.56 4.48 -53.81 -0.24 -5.81 16 9 C 0.51 5.41 6.40 -10.99 -0.07 5.34 16 10 O -0.53 -7.33 13.12 5.56 0.07 -7.26 16 11 C -0.13 -1.44 5.68 -27.89 -0.16 -1.60 16 12 C -0.01 -0.13 4.41 -27.88 -0.12 -0.25 16 13 C -0.27 -4.71 5.35 -105.05 -0.56 -5.27 16 14 C 0.05 0.95 7.22 -82.41 -0.59 0.36 16 15 C -0.06 -0.91 10.26 36.00 0.37 -0.54 16 16 N -0.30 -6.81 12.57 33.67 0.42 -6.38 16 17 N -0.33 -7.54 3.60 -58.31 -0.21 -7.75 16 18 C 0.26 6.58 6.00 -5.20 -0.03 6.55 16 19 C -0.54 -14.80 9.39 -34.44 -0.32 -15.12 16 20 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 23 Si 0.91 21.19 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.09 1.82 6.93 -82.26 -0.57 1.25 16 28 C -0.09 -1.38 9.72 36.00 0.35 -1.03 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 31 H 0.06 0.67 5.64 -51.93 -0.29 0.38 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.30 7.75 -51.93 -0.40 -0.10 16 38 H 0.38 1.24 9.12 45.56 0.42 1.66 16 39 H 0.40 2.23 8.60 -40.82 -0.35 1.88 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.07 0.97 7.73 -51.93 -0.40 0.57 16 43 H 0.07 0.97 7.20 -51.93 -0.37 0.59 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.85 7.25 -51.93 -0.38 0.48 16 47 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.05 1.27 7.05 -51.93 -0.37 0.91 16 49 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 52 H 0.07 0.90 7.77 -51.93 -0.40 0.50 16 LS Contribution 421.29 15.07 6.35 6.35 Total: -1.00 -33.25 421.29 -8.39 -41.64 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.34 Total: 2.12 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.68 Total: -10.05 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.71 Total: -44.29 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.41 Total: -11.93 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.25 -8.39 -41.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159276453.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.715 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds