Wall clock time and date at job start Tue Mar 31 2020 20:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46974 * 2 1 4 4 H 1.08995 * 109.47164 * 305.00205 * 3 2 1 5 5 C 1.53002 * 109.46865 * 65.00480 * 3 2 1 6 6 C 1.50705 * 109.46874 * 184.99927 * 3 2 1 7 7 C 1.41261 * 126.70806 * 274.71490 * 6 3 2 8 8 C 1.36823 * 103.84724 * 179.89387 * 7 6 3 9 9 C 1.47513 * 126.94580 * 180.11884 * 8 7 6 10 10 O 1.21591 * 119.99435 * 354.00002 * 9 8 7 11 11 N 1.34775 * 120.00254 * 174.00284 * 9 8 7 12 12 C 1.46498 * 119.99672 * 4.40672 * 11 9 8 13 13 C 1.50699 * 109.47569 * 83.72572 * 12 11 9 14 14 H 1.08004 * 119.99400 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00452 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99816 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00068 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47261 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46993 * 120.00280 * 17 15 13 20 20 H 1.48504 * 109.47254 * 240.00034 * 17 15 13 21 21 C 1.46493 * 119.99796 * 184.40536 * 11 9 8 22 22 C 1.52998 * 109.47358 * 90.00220 * 21 11 9 23 23 C 1.52998 * 109.47457 * 179.97438 * 22 21 11 24 24 N 1.46903 * 109.47391 * 179.97438 * 23 22 21 25 25 C 1.46893 * 110.99681 * 66.04675 * 24 23 22 26 26 C 1.46898 * 111.00202 * 190.00390 * 24 23 22 27 27 O 1.34645 * 106.11202 * 0.36000 * 8 7 6 28 28 N 1.20887 * 111.46570 * 359.75777 * 27 8 7 29 29 H 1.08993 * 109.46647 * 299.99636 * 1 2 3 30 30 H 1.08991 * 109.47076 * 59.99993 * 1 2 3 31 31 H 1.08998 * 109.46637 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46557 * 240.00091 * 2 1 3 33 33 H 1.09001 * 109.47225 * 120.00530 * 2 1 3 34 34 H 1.09002 * 109.46925 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47030 * 299.99248 * 5 3 2 36 36 H 1.08995 * 109.47454 * 59.99902 * 5 3 2 37 37 H 1.08001 * 128.07223 * 359.97438 * 7 6 3 38 38 H 1.09007 * 109.46578 * 203.72256 * 12 11 9 39 39 H 1.08998 * 109.47273 * 323.72003 * 12 11 9 40 40 H 0.97004 * 119.99836 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.47089 * 209.99841 * 21 11 9 42 42 H 1.09001 * 109.47688 * 329.99939 * 21 11 9 43 43 H 1.09003 * 109.46711 * 299.99852 * 22 21 11 44 44 H 1.09001 * 109.46950 * 59.99267 * 22 21 11 45 45 H 1.08993 * 109.47302 * 300.00471 * 23 22 21 46 46 H 1.09011 * 109.46710 * 60.00042 * 23 22 21 47 47 H 1.09004 * 109.47125 * 60.00389 * 25 24 23 48 48 H 1.08993 * 109.47390 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.47853 * 300.00247 * 25 24 23 50 50 H 1.08997 * 109.47233 * 59.99997 * 26 24 23 51 51 H 1.09001 * 109.46895 * 180.02562 * 26 24 23 52 52 H 1.09000 * 109.46852 * 300.00034 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5420 1.4443 -0.1238 7 6 4.4761 1.3194 0.9285 8 6 5.6891 1.3775 0.2981 9 6 7.0205 1.2931 0.9278 10 8 7.1193 1.2670 2.1394 11 7 8.1272 1.2450 0.1601 12 6 8.0155 1.3737 -1.2949 13 6 7.9625 2.8329 -1.6677 14 1 8.0071 3.5888 -0.8976 15 6 7.8571 3.2029 -2.9916 16 7 7.8022 2.2824 -3.9292 17 14 7.7907 5.0117 -3.4534 18 1 7.8686 5.8398 -2.2234 19 1 8.9346 5.3378 -4.3425 20 1 6.5167 5.2953 -4.1618 21 6 9.4417 1.0640 0.7808 22 6 9.7571 -0.4297 0.8812 23 6 11.1303 -0.6187 1.5288 24 7 11.4328 -2.0530 1.6258 25 6 11.5902 -2.6491 0.2925 26 6 12.6262 -2.2848 2.4504 27 8 5.4222 1.5327 -1.0124 28 7 4.2318 1.5668 -1.2204 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 1.9990 3.1540 1.3076 35 1 0.5490 2.1252 1.3970 36 1 2.0700 1.5874 2.1492 37 1 4.2788 1.2037 1.9840 38 1 8.8805 0.9090 -1.7682 39 1 7.1058 0.8786 -1.6347 40 1 7.7284 2.5427 -4.8608 41 1 10.2013 1.5556 0.1728 42 1 9.4358 1.5020 1.7789 43 1 8.9975 -0.9213 1.4891 44 1 9.7630 -0.8677 -0.1169 45 1 11.8896 -0.1272 0.9207 46 1 11.1246 -0.1806 2.5270 47 1 12.4074 -2.1543 -0.2325 48 1 11.8131 -3.7112 0.3934 49 1 10.6667 -2.5241 -0.2728 50 1 12.4558 -1.8949 3.4539 51 1 12.8278 -3.3546 2.5052 52 1 13.4808 -1.7768 2.0035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161774292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:36 Heat of formation + Delta-G solvation = 18.353123 kcal Electronic energy + Delta-G solvation = -30232.997027 eV Core-core repulsion = 26235.860760 eV Total energy + Delta-G solvation = -3997.136267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.34434 -39.20327 -37.60982 -36.97150 -35.39383 -32.97107 -32.75782 -31.91324 -30.85558 -29.42957 -27.64506 -27.42217 -26.21789 -25.19494 -23.73553 -23.03723 -22.57991 -21.71879 -20.73311 -20.41444 -18.78533 -17.17023 -16.98902 -16.26409 -16.01053 -15.82811 -15.45851 -15.10185 -14.95743 -14.80721 -14.57665 -14.26118 -14.01764 -13.83323 -13.64765 -13.27859 -12.90928 -12.64853 -12.47694 -12.37498 -12.21146 -12.17173 -11.81698 -11.81305 -11.66634 -11.56491 -11.28572 -11.21404 -11.16956 -11.10248 -10.92054 -10.90622 -10.68830 -10.58296 -10.33105 -10.09184 -9.77602 -9.58995 -9.55720 -9.11327 -8.50939 -8.37409 -7.87992 -6.13586 -4.19725 1.47710 2.55544 3.25353 3.29138 3.34354 3.38421 3.61754 3.85561 4.05629 4.31729 4.38508 4.73522 4.91224 5.03865 5.07644 5.12591 5.18001 5.22174 5.24143 5.34291 5.38079 5.43305 5.46529 5.49791 5.52506 5.61735 5.62618 5.71291 5.75044 5.76209 5.78808 5.84149 5.86605 5.91732 5.96498 5.98477 6.01238 6.08304 6.28533 6.31259 6.38564 6.39439 6.51888 6.65491 7.00808 7.03566 7.23113 7.39690 7.78666 8.05727 8.06144 8.54591 8.83224 8.87286 9.47218 10.94137 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007777 B = 0.003781 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.714651 B = 7403.602249 C = 9982.736178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.009 4.009 4 H 0.086 0.914 5 C -0.145 4.145 6 C -0.003 4.003 7 C -0.175 4.175 8 C -0.059 4.059 9 C 0.599 3.401 10 O -0.548 6.548 11 N -0.578 5.578 12 C 0.230 3.770 13 C -0.536 4.536 14 H 0.060 0.940 15 C 0.073 3.927 16 N -0.885 5.885 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.121 3.879 22 C -0.131 4.131 23 C 0.059 3.941 24 N -0.549 5.549 25 C 0.020 3.980 26 C 0.025 3.975 27 O 0.173 5.827 28 N -0.354 5.354 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.172 0.828 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.075 0.925 47 H 0.025 0.975 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -6.923 9.314 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.028 4.028 4 H 0.104 0.896 5 C -0.203 4.203 6 C -0.160 4.160 7 C -0.197 4.197 8 C -0.126 4.126 9 C 0.385 3.615 10 O -0.429 6.429 11 N -0.306 5.306 12 C 0.111 3.889 13 C -0.574 4.574 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.523 5.523 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.003 4.003 22 C -0.170 4.170 23 C -0.069 4.069 24 N -0.273 5.273 25 C -0.128 4.128 26 C -0.123 4.123 27 O 0.096 5.904 28 N -0.049 5.049 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.189 0.811 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.093 0.907 47 H 0.044 0.956 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.086 0.914 51 H 0.084 0.916 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.488 -7.035 8.641 11.676 hybrid contribution 0.747 1.365 -0.183 1.567 sum -2.741 -5.671 8.458 10.545 Atomic orbital electron populations 1.21816 0.95413 1.01674 1.01963 1.21558 0.95845 0.95284 1.02705 1.19487 0.86193 0.97366 0.99752 0.89604 1.21875 1.01375 1.00777 0.96263 1.23414 0.98243 1.05437 0.88896 1.22576 0.89771 1.06009 1.01379 1.24180 0.96914 1.06586 0.84877 1.16646 0.81793 0.77532 0.85570 1.90754 1.85852 1.53465 1.12812 1.48187 1.04843 1.67178 1.10412 1.19753 0.99048 0.98033 0.72076 1.21372 1.52160 0.91399 0.92503 0.92210 1.24828 0.94511 0.97561 0.96185 1.69916 1.49092 1.32672 1.00588 0.86535 0.77766 0.85164 0.78606 1.19738 1.20859 1.20781 1.21325 0.84504 0.95198 0.99242 1.21965 0.96507 0.97088 1.01397 1.22068 0.96679 0.87303 1.00889 1.61967 1.36502 1.14496 1.14286 1.22446 1.01357 0.99235 0.89735 1.22365 0.90694 1.01428 0.97839 1.85558 1.17427 1.63714 1.23658 1.73771 0.90741 1.15986 1.24442 0.92344 0.92659 0.92667 0.91668 0.91505 0.92266 0.91676 0.92048 0.81054 0.93924 0.93237 0.92614 0.89968 0.90405 0.90957 0.91440 0.94553 0.90652 0.95601 0.91746 0.90710 0.91425 0.91619 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.12 -1.32 5.38 -26.73 -0.14 -1.46 16 3 C -0.01 -0.11 2.85 -91.77 -0.26 -0.38 16 4 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 5 C -0.15 -1.56 8.56 37.16 0.32 -1.24 16 6 C 0.00 -0.05 6.20 -82.16 -0.51 -0.56 16 7 C -0.17 -3.07 10.13 -38.95 -0.39 -3.47 16 8 C -0.06 -1.22 6.88 -36.32 -0.25 -1.47 16 9 C 0.60 12.70 7.61 -12.48 -0.09 12.60 16 10 O -0.55 -11.96 16.47 5.29 0.09 -11.88 16 11 N -0.58 -11.96 2.47 -176.30 -0.44 -12.39 16 12 C 0.23 5.43 4.76 -5.19 -0.02 5.41 16 13 C -0.54 -13.97 8.57 -34.44 -0.30 -14.27 16 14 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 15 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 16 N -0.88 -24.57 13.29 55.43 0.74 -23.84 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.12 2.08 5.41 -4.05 -0.02 2.06 16 22 C -0.13 -1.98 5.46 -26.73 -0.15 -2.12 16 23 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 24 N -0.55 -6.80 5.02 -251.27 -1.26 -8.06 16 25 C 0.02 0.23 9.32 60.06 0.56 0.79 16 26 C 0.03 0.25 9.57 60.06 0.57 0.82 16 27 O 0.17 3.92 7.40 15.54 0.11 4.04 16 28 N -0.35 -7.45 12.04 33.52 0.40 -7.05 16 29 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 36 H 0.06 0.63 7.48 -51.93 -0.39 0.24 16 37 H 0.17 2.58 7.65 -52.49 -0.40 2.18 16 38 H 0.04 1.03 8.02 -51.93 -0.42 0.61 16 39 H 0.05 1.25 5.39 -51.93 -0.28 0.97 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 42 H 0.08 1.32 7.36 -51.93 -0.38 0.94 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 45 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 46 H 0.08 0.92 8.06 -51.92 -0.42 0.50 16 47 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 49 H 0.07 0.91 6.47 -51.93 -0.34 0.58 16 50 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 51 H 0.06 0.58 8.12 -51.93 -0.42 0.15 16 52 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 418.43 15.07 6.31 6.31 Total: -1.00 -29.68 418.43 -8.62 -38.30 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -9.10 Total: 0.21 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.45 Total: -1.70 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.56 Total: -51.34 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.20 Total: -7.84 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -29.68 -8.62 -38.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161774292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.649 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds