Wall clock time and date at job start Tue Mar 31 2020 20:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46974 * 2 1 4 4 H 1.08995 * 109.47164 * 305.00205 * 3 2 1 5 5 C 1.53002 * 109.46865 * 65.00480 * 3 2 1 6 6 C 1.50705 * 109.46874 * 184.99927 * 3 2 1 7 7 C 1.41261 * 126.70806 * 274.71490 * 6 3 2 8 8 C 1.36823 * 103.84724 * 179.89387 * 7 6 3 9 9 C 1.47513 * 126.94580 * 180.11884 * 8 7 6 10 10 O 1.21591 * 119.99435 * 354.00002 * 9 8 7 11 11 N 1.34775 * 120.00254 * 174.00284 * 9 8 7 12 12 C 1.46498 * 119.99672 * 4.40672 * 11 9 8 13 13 C 1.50699 * 109.47569 * 83.72572 * 12 11 9 14 14 H 1.08004 * 119.99400 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00452 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99816 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00068 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47261 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46993 * 120.00280 * 17 15 13 20 20 H 1.48504 * 109.47254 * 240.00034 * 17 15 13 21 21 C 1.46493 * 119.99796 * 184.40536 * 11 9 8 22 22 C 1.52998 * 109.47358 * 90.00220 * 21 11 9 23 23 C 1.52998 * 109.47457 * 179.97438 * 22 21 11 24 24 N 1.46903 * 109.47391 * 179.97438 * 23 22 21 25 25 C 1.46893 * 110.99681 * 66.04675 * 24 23 22 26 26 C 1.46898 * 111.00202 * 190.00390 * 24 23 22 27 27 O 1.34645 * 106.11202 * 0.36000 * 8 7 6 28 28 N 1.20887 * 111.46570 * 359.75777 * 27 8 7 29 29 H 1.08993 * 109.46647 * 299.99636 * 1 2 3 30 30 H 1.08991 * 109.47076 * 59.99993 * 1 2 3 31 31 H 1.08998 * 109.46637 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46557 * 240.00091 * 2 1 3 33 33 H 1.09001 * 109.47225 * 120.00530 * 2 1 3 34 34 H 1.09002 * 109.46925 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47030 * 299.99248 * 5 3 2 36 36 H 1.08995 * 109.47454 * 59.99902 * 5 3 2 37 37 H 1.08001 * 128.07223 * 359.97438 * 7 6 3 38 38 H 1.09007 * 109.46578 * 203.72256 * 12 11 9 39 39 H 1.08998 * 109.47273 * 323.72003 * 12 11 9 40 40 H 0.97004 * 119.99836 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.47089 * 209.99841 * 21 11 9 42 42 H 1.09001 * 109.47688 * 329.99939 * 21 11 9 43 43 H 1.09003 * 109.46711 * 299.99852 * 22 21 11 44 44 H 1.09001 * 109.46950 * 59.99267 * 22 21 11 45 45 H 1.08993 * 109.47302 * 300.00471 * 23 22 21 46 46 H 1.09011 * 109.46710 * 60.00042 * 23 22 21 47 47 H 1.09004 * 109.47125 * 60.00389 * 25 24 23 48 48 H 1.08993 * 109.47390 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.47853 * 300.00247 * 25 24 23 50 50 H 1.08997 * 109.47233 * 59.99997 * 26 24 23 51 51 H 1.09001 * 109.46895 * 180.02562 * 26 24 23 52 52 H 1.09000 * 109.46852 * 300.00034 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5420 1.4443 -0.1238 7 6 4.4761 1.3194 0.9285 8 6 5.6891 1.3775 0.2981 9 6 7.0205 1.2931 0.9278 10 8 7.1193 1.2670 2.1394 11 7 8.1272 1.2450 0.1601 12 6 8.0155 1.3737 -1.2949 13 6 7.9625 2.8329 -1.6677 14 1 8.0071 3.5888 -0.8976 15 6 7.8571 3.2029 -2.9916 16 7 7.8022 2.2824 -3.9292 17 14 7.7907 5.0117 -3.4534 18 1 7.8686 5.8398 -2.2234 19 1 8.9346 5.3378 -4.3425 20 1 6.5167 5.2953 -4.1618 21 6 9.4417 1.0640 0.7808 22 6 9.7571 -0.4297 0.8812 23 6 11.1303 -0.6187 1.5288 24 7 11.4328 -2.0530 1.6258 25 6 11.5902 -2.6491 0.2925 26 6 12.6262 -2.2848 2.4504 27 8 5.4222 1.5327 -1.0124 28 7 4.2318 1.5668 -1.2204 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 1.9990 3.1540 1.3076 35 1 0.5490 2.1252 1.3970 36 1 2.0700 1.5874 2.1492 37 1 4.2788 1.2037 1.9840 38 1 8.8805 0.9090 -1.7682 39 1 7.1058 0.8786 -1.6347 40 1 7.7284 2.5427 -4.8608 41 1 10.2013 1.5556 0.1728 42 1 9.4358 1.5020 1.7789 43 1 8.9975 -0.9213 1.4891 44 1 9.7630 -0.8677 -0.1169 45 1 11.8896 -0.1272 0.9207 46 1 11.1246 -0.1806 2.5270 47 1 12.4074 -2.1543 -0.2325 48 1 11.8131 -3.7112 0.3934 49 1 10.6667 -2.5241 -0.2728 50 1 12.4558 -1.8949 3.4539 51 1 12.8278 -3.3546 2.5052 52 1 13.4808 -1.7768 2.0035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161774292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:35 Heat of formation + Delta-G solvation = 1.559850 kcal Electronic energy + Delta-G solvation = -30233.725238 eV Core-core repulsion = 26235.860760 eV Total energy + Delta-G solvation = -3997.864478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.86486 -40.84720 -38.65283 -38.06624 -37.02658 -34.80222 -34.06824 -33.48565 -32.29357 -30.34338 -29.29568 -28.47273 -27.56406 -26.19243 -25.34253 -24.65909 -23.86175 -23.05226 -21.83903 -21.62383 -20.20672 -18.94817 -18.55424 -18.12484 -17.53013 -17.27223 -16.53065 -16.45268 -16.25881 -16.00567 -15.89079 -15.47818 -15.40453 -14.99261 -14.69945 -14.63025 -14.42143 -14.28280 -13.68143 -13.54180 -13.26728 -13.17438 -13.15481 -12.98822 -12.79640 -12.73679 -12.64550 -12.59044 -12.46221 -12.38215 -12.31347 -12.12500 -12.09988 -11.88500 -11.70838 -11.55800 -11.49623 -11.28651 -10.94276 -10.69711 -10.56356 -9.61328 -9.30399 -8.19545 -6.31304 -0.12057 1.13752 1.36172 1.39726 1.48752 1.74091 1.99113 2.28102 2.43916 3.04191 3.07351 3.13646 3.39204 3.81021 3.95289 3.95967 4.06349 4.11560 4.14787 4.22778 4.23260 4.38741 4.43864 4.49370 4.52645 4.58331 4.60854 4.64411 4.67287 4.75653 4.77543 4.80713 4.83732 4.95502 5.02269 5.03195 5.05634 5.11227 5.13480 5.14164 5.20006 5.22177 5.30665 5.40476 5.50056 5.60049 5.74358 6.03633 6.06144 6.13036 6.29933 6.73101 6.95638 7.26911 7.38644 8.87590 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007777 B = 0.003781 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.714651 B = 7403.602249 C = 9982.736178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.011 4.011 4 H 0.083 0.917 5 C -0.142 4.142 6 C 0.016 3.984 7 C -0.156 4.156 8 C -0.087 4.087 9 C 0.597 3.403 10 O -0.557 6.557 11 N -0.580 5.580 12 C 0.248 3.752 13 C -0.538 4.538 14 H 0.049 0.951 15 C 0.031 3.969 16 N -0.913 5.913 17 Si 0.946 3.054 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.285 1.285 21 C 0.118 3.882 22 C -0.116 4.116 23 C 0.066 3.934 24 N -0.565 5.565 25 C 0.021 3.979 26 C 0.025 3.975 27 O 0.131 5.869 28 N -0.386 5.386 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.201 0.799 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.266 0.734 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.042 0.958 46 H 0.083 0.917 47 H 0.028 0.972 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.078 0.922 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 -6.878 10.933 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.031 4.031 4 H 0.101 0.899 5 C -0.199 4.199 6 C -0.142 4.142 7 C -0.179 4.179 8 C -0.153 4.153 9 C 0.383 3.617 10 O -0.439 6.439 11 N -0.309 5.309 12 C 0.127 3.873 13 C -0.576 4.576 14 H 0.067 0.933 15 C -0.170 4.170 16 N -0.552 5.552 17 Si 0.772 3.228 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.211 1.211 21 C -0.004 4.004 22 C -0.155 4.155 23 C -0.063 4.063 24 N -0.289 5.289 25 C -0.127 4.127 26 C -0.123 4.123 27 O 0.062 5.938 28 N -0.089 5.089 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.218 0.782 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.047 0.953 48 H 0.098 0.902 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.096 0.904 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.187 -6.996 10.279 13.120 hybrid contribution 0.910 1.302 -0.630 1.709 sum -3.277 -5.694 9.649 11.673 Atomic orbital electron populations 1.21790 0.93111 1.02653 1.02791 1.21541 0.97773 0.93703 1.02077 1.19771 0.83098 0.98937 1.01256 0.89879 1.21890 1.03262 0.99964 0.94793 1.24173 1.00178 1.02197 0.87665 1.22986 0.88512 1.03775 1.02588 1.24381 0.97700 1.08249 0.85016 1.16756 0.82123 0.77282 0.85544 1.90729 1.86118 1.54146 1.12868 1.48175 1.06181 1.67133 1.09362 1.19336 0.97709 0.96560 0.73682 1.21503 1.51575 0.92237 0.92322 0.93297 1.25476 0.94349 1.00962 0.96241 1.70001 1.50083 1.34264 1.00846 0.85692 0.77783 0.81048 0.78307 1.19597 1.19704 1.21068 1.21514 0.83004 0.96774 0.99112 1.21787 0.97714 0.95136 1.00868 1.21963 0.95047 0.88182 1.01093 1.61953 1.38154 1.13871 1.14941 1.22445 1.00697 1.00229 0.89350 1.22423 0.89785 1.02430 0.97627 1.85510 1.18260 1.65533 1.24529 1.73764 0.90659 1.18153 1.26294 0.90648 0.92683 0.91682 0.93675 0.90838 0.93060 0.88913 0.91146 0.78230 0.94851 0.94895 0.92502 0.89624 0.89953 0.92478 0.92336 0.93994 0.89822 0.95310 0.90181 0.92192 0.90823 0.90364 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.67 71.99 0.70 -1.53 16 2 C -0.11 -2.37 5.38 30.60 0.16 -2.21 16 3 C -0.01 -0.28 2.85 -11.54 -0.03 -0.31 16 4 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 5 C -0.14 -2.63 8.56 71.98 0.62 -2.01 16 6 C 0.02 0.54 6.20 43.56 0.27 0.81 16 7 C -0.16 -5.40 10.13 22.68 0.23 -5.17 16 8 C -0.09 -3.70 6.88 24.39 0.17 -3.53 16 9 C 0.60 25.77 7.61 86.69 0.66 26.43 16 10 O -0.56 -24.27 16.47 -4.00 -0.07 -24.34 16 11 N -0.58 -24.70 2.47 -829.97 -2.05 -26.76 16 12 C 0.25 12.15 4.76 85.63 0.41 12.55 16 13 C -0.54 -28.75 8.57 25.60 0.22 -28.53 16 14 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 15 C 0.03 1.67 5.46 84.65 0.46 2.13 16 16 N -0.91 -51.83 13.29 21.44 0.28 -51.55 16 17 Si 0.95 43.65 29.54 68.60 2.03 45.67 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 C 0.12 4.13 5.41 86.38 0.47 4.60 16 22 C -0.12 -3.56 5.46 30.59 0.17 -3.39 16 23 C 0.07 1.63 4.96 86.30 0.43 2.06 16 24 N -0.56 -13.36 5.02 -948.87 -4.76 -18.12 16 25 C 0.02 0.46 9.32 127.69 1.19 1.65 16 26 C 0.03 0.45 9.57 127.69 1.22 1.67 16 27 O 0.13 6.20 7.40 65.79 0.49 6.69 16 28 N -0.39 -16.75 12.04 -48.85 -0.59 -17.34 16 29 H 0.07 0.90 6.56 -2.39 -0.02 0.89 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.24 6.57 -2.38 -0.02 1.22 16 36 H 0.07 1.19 7.48 -2.39 -0.02 1.17 16 37 H 0.20 5.58 7.65 -2.91 -0.02 5.55 16 38 H 0.03 1.68 8.02 -2.38 -0.02 1.66 16 39 H 0.03 1.77 5.39 -2.39 -0.01 1.75 16 40 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.09 2.90 8.07 -2.39 -0.02 2.88 16 42 H 0.08 2.80 7.36 -2.39 -0.02 2.78 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.06 1.89 6.55 -2.39 -0.02 1.87 16 45 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 46 H 0.08 1.94 8.06 -2.38 -0.02 1.92 16 47 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 49 H 0.06 1.48 6.47 -2.39 -0.02 1.47 16 50 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 51 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 52 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -64.96 418.43 3.55 -61.41 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.88 Total: 19.11 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 7.34 Total: 5.22 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -7.12 Total: -113.77 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.42 Total: -17.65 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -64.96 3.55 -61.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161774292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.973 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds