Wall clock time and date at job start Tue Mar 31 2020 20:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46951 * 2 1 4 4 H 1.09007 * 109.47326 * 55.00057 * 3 2 1 5 5 C 1.53005 * 109.47050 * 295.00190 * 3 2 1 6 6 C 1.50703 * 109.47405 * 175.00122 * 3 2 1 7 7 C 1.41257 * 126.70631 * 85.27627 * 6 3 2 8 8 C 1.36822 * 103.84924 * 180.13772 * 7 6 3 9 9 C 1.47506 * 126.94756 * 179.87588 * 8 7 6 10 10 O 1.21584 * 120.00037 * 354.14022 * 9 8 7 11 11 N 1.34781 * 120.00157 * 173.86344 * 9 8 7 12 12 C 1.46494 * 119.99892 * 354.92489 * 11 9 8 13 13 C 1.50702 * 109.47310 * 85.47644 * 12 11 9 14 14 H 1.08005 * 119.99710 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99949 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00353 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00008 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47335 * 59.99955 * 17 15 13 19 19 H 1.48498 * 109.47493 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.47027 * 300.00286 * 17 15 13 21 21 C 1.46500 * 119.99943 * 174.92270 * 11 9 8 22 22 C 1.53001 * 109.46933 * 89.99724 * 21 11 9 23 23 C 1.53006 * 109.47185 * 179.97438 * 22 21 11 24 24 N 1.46898 * 109.47045 * 180.02562 * 23 22 21 25 25 C 1.46893 * 110.99804 * 170.00404 * 24 23 22 26 26 C 1.46907 * 110.99955 * 293.95135 * 24 23 22 27 27 O 1.34645 * 106.10897 * 359.61760 * 8 7 6 28 28 N 1.20890 * 111.46750 * 0.26159 * 27 8 7 29 29 H 1.09009 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47173 * 299.99364 * 1 2 3 31 31 H 1.08997 * 109.47254 * 60.00500 * 1 2 3 32 32 H 1.08993 * 109.47289 * 240.00381 * 2 1 3 33 33 H 1.08997 * 109.47254 * 119.99500 * 2 1 3 34 34 H 1.08999 * 109.47016 * 179.97438 * 5 3 2 35 35 H 1.08995 * 109.46944 * 299.99680 * 5 3 2 36 36 H 1.08992 * 109.47084 * 60.00387 * 5 3 2 37 37 H 1.08000 * 128.07461 * 0.02562 * 7 6 3 38 38 H 1.09000 * 109.47155 * 205.47601 * 12 11 9 39 39 H 1.09003 * 109.47407 * 325.47556 * 12 11 9 40 40 H 0.97001 * 120.00062 * 180.02562 * 16 15 13 41 41 H 1.08989 * 109.47222 * 209.99820 * 21 11 9 42 42 H 1.09002 * 109.46991 * 330.00244 * 21 11 9 43 43 H 1.08991 * 109.47726 * 300.00285 * 22 21 11 44 44 H 1.09002 * 109.46857 * 60.00438 * 22 21 11 45 45 H 1.08997 * 109.46868 * 300.00737 * 23 22 21 46 46 H 1.08995 * 109.46498 * 60.00239 * 23 22 21 47 47 H 1.08999 * 109.47519 * 59.99673 * 25 24 23 48 48 H 1.09005 * 109.47220 * 179.97438 * 25 24 23 49 49 H 1.09002 * 109.47121 * 299.99640 * 25 24 23 50 50 H 1.09008 * 109.47006 * 59.99980 * 26 24 23 51 51 H 1.08993 * 109.47497 * 180.02562 * 26 24 23 52 52 H 1.09004 * 109.47197 * 300.00856 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4444 0.1238 7 6 4.4759 1.3195 -0.9285 8 6 5.6890 1.3771 -0.2982 9 6 7.0202 1.2922 -0.9278 10 8 7.1167 1.0500 -2.1153 11 7 8.1294 1.4888 -0.1878 12 6 8.0118 1.8956 1.2146 13 6 7.8387 0.6736 2.0794 14 1 7.8179 -0.3079 1.6292 15 6 7.7068 0.8087 3.4451 16 7 7.7316 2.0039 3.9932 17 14 7.4930 -0.7061 4.5171 18 1 8.6707 -1.5964 4.3568 19 1 7.3736 -0.2937 5.9387 20 1 6.2640 -1.4325 4.1081 21 6 9.4527 1.2955 -0.7859 22 6 9.9348 2.6139 -1.3945 23 6 11.3172 2.4122 -2.0186 24 7 11.7803 3.6782 -2.6023 25 6 13.1919 3.5897 -2.9990 26 6 10.9378 4.0731 -3.7392 27 8 5.4220 1.5326 1.0124 28 7 4.2316 1.5669 1.2204 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.9980 3.1544 -1.3072 35 1 2.0697 1.5876 -2.1491 36 1 0.5488 2.1253 -1.3969 37 1 4.2786 1.2036 -1.9839 38 1 8.9139 2.4286 1.5152 39 1 7.1474 2.5492 1.3320 40 1 7.6392 2.0989 4.9541 41 1 10.1549 0.9716 -0.0178 42 1 9.3916 0.5363 -1.5657 43 1 9.2327 2.9378 -2.1626 44 1 9.9960 3.3730 -0.6147 45 1 12.0190 2.0885 -1.2501 46 1 11.2564 1.6529 -2.7982 47 1 13.3124 2.7987 -3.7392 48 1 13.5089 4.5401 -3.4284 49 1 13.8017 3.3645 -2.1241 50 1 9.9088 4.1992 -3.4023 51 1 11.3029 5.0131 -4.1528 52 1 10.9766 3.2995 -4.5062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161774436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:38 Heat of formation + Delta-G solvation = 1.155547 kcal Electronic energy + Delta-G solvation = -30270.153556 eV Core-core repulsion = 26272.271546 eV Total energy + Delta-G solvation = -3997.882010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.84591 -40.85333 -38.64123 -38.06349 -37.02718 -34.77529 -34.05407 -33.47518 -32.27725 -30.34634 -29.27869 -28.47492 -27.55547 -26.18222 -25.32849 -24.63392 -23.85448 -23.07572 -21.82994 -21.62695 -20.16816 -18.85328 -18.60281 -18.13530 -17.49352 -17.25003 -16.54997 -16.46843 -16.22748 -15.99952 -15.87755 -15.48067 -15.40479 -14.95791 -14.67361 -14.63423 -14.39290 -14.30760 -13.65049 -13.50524 -13.31961 -13.25108 -13.00002 -12.96526 -12.92663 -12.74313 -12.65135 -12.55350 -12.46446 -12.38493 -12.33318 -12.11773 -11.98551 -11.90143 -11.73606 -11.57868 -11.52871 -11.26791 -10.93607 -10.69465 -10.53398 -9.61173 -9.29615 -8.16720 -6.27804 -0.11353 1.14294 1.39151 1.41762 1.47424 1.75798 1.98903 2.29015 2.45647 3.05007 3.08372 3.17166 3.39776 3.81299 3.95099 3.98597 4.06176 4.10713 4.13908 4.23068 4.24099 4.40354 4.43802 4.48666 4.52553 4.57549 4.61545 4.63319 4.67930 4.74709 4.76421 4.81166 4.86221 4.95388 5.01371 5.03600 5.05275 5.10508 5.13045 5.13408 5.19015 5.21327 5.31163 5.39449 5.48870 5.60293 5.75357 6.05114 6.07261 6.13782 6.30963 6.75175 6.95392 7.28559 7.41639 8.90361 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.003687 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.565523 B = 7591.782537 C =10244.285553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.011 4.011 4 H 0.084 0.916 5 C -0.140 4.140 6 C 0.012 3.988 7 C -0.157 4.157 8 C -0.090 4.090 9 C 0.596 3.404 10 O -0.557 6.557 11 N -0.580 5.580 12 C 0.251 3.749 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.033 3.967 16 N -0.914 5.914 17 Si 0.943 3.057 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.283 1.283 21 C 0.121 3.879 22 C -0.116 4.116 23 C 0.066 3.934 24 N -0.566 5.566 25 C 0.025 3.975 26 C 0.023 3.977 27 O 0.141 5.859 28 N -0.388 5.388 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.201 0.799 38 H 0.034 0.966 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.084 0.916 46 H 0.040 0.960 47 H 0.030 0.970 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.058 0.942 51 H 0.079 0.921 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 0.661 -13.732 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.030 4.030 4 H 0.102 0.898 5 C -0.198 4.198 6 C -0.145 4.145 7 C -0.179 4.179 8 C -0.157 4.157 9 C 0.382 3.618 10 O -0.438 6.438 11 N -0.308 5.308 12 C 0.131 3.869 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.168 4.168 16 N -0.553 5.553 17 Si 0.770 3.230 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.209 1.209 21 C -0.002 4.002 22 C -0.155 4.155 23 C -0.063 4.063 24 N -0.290 5.290 25 C -0.123 4.123 26 C -0.125 4.125 27 O 0.069 5.931 28 N -0.089 5.089 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.218 0.782 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.098 0.902 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.909 1.165 -12.493 13.142 hybrid contribution 0.169 -1.333 -0.132 1.350 sum -3.740 -0.168 -12.626 13.169 Atomic orbital electron populations 1.21786 0.92985 1.02616 1.02877 1.21548 0.97882 0.93969 1.01877 1.19763 0.83133 0.98710 1.01401 0.89800 1.21879 1.03249 1.00031 0.94616 1.24178 1.00198 1.02492 0.87660 1.22977 0.88519 1.03817 1.02604 1.24388 0.97717 1.08501 0.85045 1.16744 0.82087 0.77765 0.85163 1.90723 1.86228 1.52685 1.14206 1.48187 1.05578 1.63800 1.13216 1.19244 0.97430 0.95271 0.74969 1.21394 1.50866 0.92866 0.92023 0.93216 1.25435 0.94430 0.98051 0.98875 1.69984 1.50147 1.23263 1.11946 0.85837 0.78640 0.80465 0.78106 1.18967 1.20639 1.20873 1.21511 0.82464 0.97933 0.98284 1.21782 0.96655 0.97115 0.99992 1.21965 0.95583 0.90062 0.98649 1.61947 1.04076 1.31545 1.31403 1.22420 0.87654 1.01687 1.00490 1.22428 0.97864 1.00703 0.91520 1.85549 1.18073 1.65059 1.24396 1.73777 0.90716 1.18213 1.26152 0.91820 0.92617 0.90474 0.90959 0.94057 0.92759 0.91239 0.88952 0.78240 0.94752 0.95759 0.92546 0.89332 0.90297 0.92650 0.92153 0.89734 0.94158 0.95182 0.90370 0.90901 0.92331 0.90186 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.67 71.98 0.70 -1.61 16 2 C -0.11 -2.53 5.38 30.59 0.16 -2.37 16 3 C -0.01 -0.27 2.85 -11.54 -0.03 -0.30 16 4 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 5 C -0.14 -2.54 8.56 71.98 0.62 -1.92 16 6 C 0.01 0.42 6.20 43.55 0.27 0.69 16 7 C -0.16 -5.42 10.13 22.68 0.23 -5.19 16 8 C -0.09 -3.81 6.77 24.38 0.17 -3.65 16 9 C 0.60 25.48 7.62 86.69 0.66 26.14 16 10 O -0.56 -23.79 16.55 -3.98 -0.07 -23.86 16 11 N -0.58 -24.54 2.47 -829.98 -2.05 -26.59 16 12 C 0.25 12.33 4.75 85.63 0.41 12.74 16 13 C -0.53 -28.30 7.93 25.60 0.20 -28.10 16 14 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 15 C 0.03 1.80 5.46 84.65 0.46 2.26 16 16 N -0.91 -52.13 13.29 21.44 0.28 -51.85 16 17 Si 0.94 43.78 29.54 68.60 2.03 45.80 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 C 0.12 4.18 5.35 86.38 0.46 4.64 16 22 C -0.12 -3.59 5.46 30.60 0.17 -3.42 16 23 C 0.07 1.64 4.96 86.31 0.43 2.07 16 24 N -0.57 -13.45 5.02 -948.84 -4.76 -18.21 16 25 C 0.03 0.46 9.57 127.69 1.22 1.68 16 26 C 0.02 0.50 9.32 127.69 1.19 1.69 16 27 O 0.14 6.69 7.16 65.79 0.47 7.16 16 28 N -0.39 -17.01 12.04 -48.87 -0.59 -17.60 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.94 6.56 -2.39 -0.02 0.93 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.16 7.48 -2.39 -0.02 1.14 16 36 H 0.09 1.20 6.56 -2.39 -0.02 1.18 16 37 H 0.20 5.53 7.65 -2.91 -0.02 5.51 16 38 H 0.03 1.74 8.04 -2.39 -0.02 1.73 16 39 H 0.02 1.31 5.92 -2.39 -0.01 1.30 16 40 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.09 2.98 8.07 -2.39 -0.02 2.96 16 42 H 0.08 2.65 7.50 -2.39 -0.02 2.63 16 43 H 0.05 1.81 6.55 -2.39 -0.02 1.80 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 1.97 8.06 -2.39 -0.02 1.95 16 46 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 47 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.08 1.21 8.12 -2.38 -0.02 1.19 16 49 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 50 H 0.06 1.43 6.47 -2.38 -0.02 1.42 16 51 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 52 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -64.71 418.13 3.51 -61.19 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.88 Total: 18.59 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 7.31 Total: 5.35 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -7.11 Total: -114.24 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.41 Total: -16.70 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -64.71 3.51 -61.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161774436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.350 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds