Wall clock time and date at job start Tue Mar 31 2020 20:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 H 1.09002 * 109.47311 * 55.00420 * 3 2 1 5 5 C 1.52997 * 109.47194 * 174.99884 * 3 2 1 6 6 N 1.46504 * 109.47456 * 295.00407 * 3 2 1 7 7 C 1.34778 * 120.00182 * 155.00088 * 6 3 2 8 8 O 1.21283 * 119.99872 * 359.97438 * 7 6 3 9 9 C 1.50697 * 119.99826 * 179.97438 * 7 6 3 10 10 N 1.46505 * 109.46998 * 179.97438 * 9 7 6 11 11 N 1.40072 * 126.03144 * 89.97605 * 10 9 7 12 12 C 1.30829 * 108.33954 * 180.02562 * 11 10 9 13 13 C 1.50698 * 125.86038 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46897 * 5.97792 * 13 12 11 15 15 C 1.52998 * 109.47118 * 245.98301 * 13 12 11 16 16 C 1.52992 * 109.47403 * 125.98056 * 13 12 11 17 17 C 1.39821 * 108.28528 * 0.24310 * 12 11 10 18 18 C 1.50698 * 126.08688 * 179.75994 * 17 12 11 19 19 C 1.50692 * 109.47284 * 95.65020 * 18 17 12 20 20 H 1.08007 * 120.00040 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00233 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47209 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47298 * 119.99478 * 23 21 19 26 26 H 1.48500 * 109.47136 * 239.99338 * 23 21 19 27 27 C 1.35124 * 126.03923 * 270.00421 * 10 9 7 28 28 O 1.35763 * 126.19563 * 359.95443 * 27 10 9 29 29 H 1.08999 * 109.46420 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47009 * 299.99488 * 1 2 3 31 31 H 1.08996 * 109.47046 * 59.99799 * 1 2 3 32 32 H 1.09000 * 109.47009 * 240.00512 * 2 1 3 33 33 H 1.08997 * 109.47557 * 120.00069 * 2 1 3 34 34 H 1.09000 * 109.47452 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47316 * 300.00513 * 5 3 2 36 36 H 1.09005 * 109.46998 * 60.00314 * 5 3 2 37 37 H 0.96994 * 119.99588 * 334.99804 * 6 3 2 38 38 H 1.09003 * 109.47261 * 60.00297 * 9 7 6 39 39 H 1.08994 * 109.47220 * 299.99786 * 9 7 6 40 40 H 1.09000 * 109.47068 * 60.00391 * 14 13 12 41 41 H 1.08997 * 109.47615 * 300.00038 * 14 13 12 42 42 H 1.09003 * 109.47135 * 179.97438 * 14 13 12 43 43 H 1.08999 * 109.47348 * 184.43125 * 15 13 12 44 44 H 1.09002 * 109.47547 * 304.43278 * 15 13 12 45 45 H 1.09002 * 109.47066 * 64.42899 * 15 13 12 46 46 H 1.09000 * 109.47112 * 299.99945 * 16 13 12 47 47 H 1.09003 * 109.47003 * 60.00212 * 16 13 12 48 48 H 1.09007 * 109.47260 * 179.97438 * 16 13 12 49 49 H 1.09003 * 109.47156 * 215.65282 * 18 17 12 50 50 H 1.09000 * 109.47001 * 335.64652 * 18 17 12 51 51 H 0.97001 * 120.00204 * 180.02562 * 22 21 19 52 52 H 0.96702 * 113.99862 * 90.02652 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0976 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.7318 4.1029 -0.3060 9 6 1.1273 4.1123 -2.5873 10 7 1.0583 5.5609 -2.3794 11 7 2.1110 6.4690 -2.5507 12 6 1.6693 7.6685 -2.2722 13 6 2.4751 8.9408 -2.3272 14 6 3.8604 8.6425 -2.9042 15 6 2.6229 9.5123 -0.9157 16 6 1.7602 9.9592 -3.2175 17 6 0.3230 7.5669 -1.9088 18 6 -0.5758 8.7070 -1.5047 19 6 -1.3595 9.1777 -2.7027 20 1 -1.2208 8.6989 -3.6609 21 6 -2.2534 10.2197 -2.5758 22 7 -2.4227 10.8024 -1.4090 23 14 -3.2253 10.8027 -4.0607 24 1 -2.8548 9.9881 -5.2458 25 1 -4.6781 10.6531 -3.7913 26 1 -2.9155 12.2307 -4.3255 27 6 -0.0318 6.2569 -1.9882 28 8 -1.2582 5.7408 -1.7183 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 3.9281 2.4721 0.1262 35 1 3.8532 0.9570 1.0571 36 1 3.9995 0.9054 -0.7161 37 1 1.4870 1.5662 -2.0462 38 1 0.1513 3.7441 -2.9033 39 1 1.8662 3.8902 -3.3571 40 1 3.7551 8.2354 -3.9098 41 1 4.3697 7.9171 -2.2700 42 1 4.4431 9.5629 -2.9445 43 1 3.1374 10.4721 -0.9643 44 1 1.6359 9.6511 -0.4746 45 1 3.2009 8.8209 -0.3025 46 1 1.6550 9.5520 -4.2231 47 1 0.7733 10.1717 -2.8063 48 1 2.3429 10.8796 -3.2569 49 1 -1.2643 8.3699 -0.7298 50 1 0.0293 9.5283 -1.1208 51 1 -3.0519 11.5353 -1.3196 52 1 -1.3811 5.4809 -0.7950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178937075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:58 Heat of formation + Delta-G solvation = -22.401264 kcal Electronic energy + Delta-G solvation = -30843.772780 eV Core-core repulsion = 26844.869270 eV Total energy + Delta-G solvation = -3998.903510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96569 -39.81937 -37.05517 -36.67673 -35.76910 -33.31759 -32.88262 -32.02188 -30.27515 -29.92952 -27.44306 -26.63901 -26.36901 -25.94553 -24.16054 -22.77583 -22.10670 -20.99036 -20.52541 -19.94146 -18.22868 -17.57952 -17.13677 -16.41098 -16.21336 -15.59851 -15.40130 -14.65532 -14.44955 -14.35521 -14.17244 -14.00179 -13.92938 -13.71399 -13.59598 -13.01672 -12.90395 -12.64389 -12.57483 -12.23505 -12.11443 -11.97372 -11.67194 -11.63338 -11.48654 -11.46424 -11.36736 -11.17467 -11.06175 -10.90941 -10.74302 -10.63589 -10.42201 -10.35695 -10.16549 -10.01380 -9.56916 -9.33724 -9.28004 -9.17151 -8.40487 -8.26651 -7.30614 -5.89870 -3.90259 2.21098 2.46838 2.71326 3.14609 3.36951 3.44286 3.48435 3.59041 4.30171 4.54319 4.57031 4.59787 4.66722 4.68920 4.84264 5.06343 5.07914 5.21003 5.22478 5.25364 5.40452 5.42883 5.49548 5.53467 5.56180 5.63545 5.75095 5.84877 5.87580 5.95492 6.09110 6.22660 6.25577 6.32314 6.38572 6.44190 6.48813 6.62428 6.68975 6.73718 6.93337 6.97989 7.08280 7.26762 7.39743 7.47632 7.77875 7.87863 8.04179 8.07358 8.23138 8.42379 8.53183 9.13430 9.70883 11.19111 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.003263 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.312383 B = 8580.223359 C = 9922.181383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.727 5.727 7 C 0.496 3.504 8 O -0.516 6.516 9 C 0.121 3.879 10 N -0.383 5.383 11 N -0.285 5.285 12 C 0.102 3.898 13 C 0.021 3.979 14 C -0.132 4.132 15 C -0.141 4.141 16 C -0.152 4.152 17 C -0.175 4.175 18 C 0.087 3.913 19 C -0.492 4.492 20 H 0.053 0.947 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.886 3.114 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.285 1.285 27 C 0.238 3.762 28 O -0.459 6.459 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.399 0.601 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.107 0.893 48 H 0.047 0.953 49 H 0.019 0.981 50 H 0.038 0.962 51 H 0.259 0.741 52 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.986 -19.478 0.903 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.037 3.963 4 H 0.106 0.894 5 C -0.223 4.223 6 N -0.381 5.381 7 C 0.280 3.720 8 O -0.389 6.389 9 C -0.006 4.006 10 N -0.177 5.177 11 N -0.109 5.109 12 C -0.064 4.064 13 C 0.018 3.982 14 C -0.190 4.190 15 C -0.199 4.199 16 C -0.210 4.210 17 C -0.186 4.186 18 C 0.050 3.950 19 C -0.530 4.530 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.536 5.536 23 Si 0.715 3.285 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.211 1.211 27 C 0.074 3.926 28 O -0.260 6.260 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.125 0.875 48 H 0.066 0.934 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.068 0.932 52 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.786 -19.585 0.771 22.372 hybrid contribution -1.396 0.018 -0.469 1.473 sum 9.390 -19.568 0.302 21.706 Atomic orbital electron populations 1.21784 0.95170 1.01737 1.02452 1.21835 0.96667 0.95298 1.03018 1.20994 0.94946 0.92935 0.87452 0.89429 1.22182 0.95355 1.02851 1.01873 1.46052 1.71638 1.06696 1.13734 1.21187 0.77335 0.82342 0.91125 1.90774 1.48217 1.63781 1.36175 1.21180 1.05058 0.78529 0.95789 1.48101 1.07831 1.04477 1.57300 1.77196 1.07927 0.98696 1.27050 1.21871 0.93630 0.92919 0.97986 1.18884 0.93051 0.89514 0.96709 1.21778 0.95714 1.00606 1.00882 1.21937 1.03121 0.99735 0.95087 1.22142 1.03663 0.96214 0.98988 1.20549 0.94987 0.94306 1.08757 1.17766 0.91952 0.89060 0.96253 1.21102 1.21297 1.15329 0.95285 0.92846 1.24955 0.97013 0.96769 0.95595 1.69958 1.36505 1.24238 1.22899 0.86616 0.79964 0.78479 0.83477 1.19854 1.21214 1.21096 1.18438 0.80917 0.89278 1.04017 1.84895 1.25703 1.82889 1.32483 0.92525 0.92478 0.92471 0.91399 0.90402 0.91908 0.91693 0.92497 0.76700 0.86539 0.86489 0.92835 0.92858 0.92959 0.92469 0.90702 0.93372 0.93431 0.87461 0.93442 0.96233 0.94454 0.93163 0.76184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.80 37.16 0.36 -0.58 16 2 C -0.13 -0.74 5.47 -26.73 -0.15 -0.89 16 3 C 0.14 1.18 2.57 -67.93 -0.17 1.01 16 4 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 5 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 6 N -0.73 -6.26 4.53 -53.80 -0.24 -6.50 16 7 C 0.50 6.43 7.86 -10.99 -0.09 6.34 16 8 O -0.52 -9.22 16.09 5.55 0.09 -9.13 16 9 C 0.12 1.56 6.87 -5.19 -0.04 1.53 16 10 N -0.38 -7.14 3.11 -62.66 -0.19 -7.34 16 11 N -0.28 -5.78 11.86 33.66 0.40 -5.38 16 12 C 0.10 2.16 5.61 -82.43 -0.46 1.70 16 13 C 0.02 0.38 0.75 -155.67 -0.12 0.27 16 14 C -0.13 -2.12 7.96 37.16 0.30 -1.83 16 15 C -0.14 -2.50 8.36 37.16 0.31 -2.19 16 16 C -0.15 -2.98 8.25 37.15 0.31 -2.67 16 17 C -0.17 -4.05 5.11 -104.85 -0.54 -4.58 16 18 C 0.09 2.26 4.42 -29.04 -0.13 2.13 16 19 C -0.49 -13.70 7.48 -34.44 -0.26 -13.95 16 20 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 23 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.24 5.02 7.92 -16.92 -0.13 4.89 16 28 O -0.46 -8.80 13.53 -19.00 -0.26 -9.06 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.36 7.75 -51.93 -0.40 -0.04 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.40 2.19 8.60 -40.82 -0.35 1.84 16 38 H 0.12 1.23 8.13 -51.93 -0.42 0.80 16 39 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.48 5.65 -51.93 -0.29 1.19 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.11 2.47 4.18 -51.93 -0.22 2.25 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.04 0.99 4.59 -51.93 -0.24 0.75 16 51 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 52 H 0.38 5.82 9.06 45.56 0.41 6.23 16 LS Contribution 418.50 15.07 6.31 6.31 Total: -1.00 -35.23 418.50 -6.94 -42.17 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.21 Total: 5.99 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.55 Total: -8.34 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.70 Total: -44.72 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.17 Total: -18.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.23 -6.94 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178937075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.771 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds