Wall clock time and date at job start Tue Mar 31 2020 20:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47215 * 2 1 4 4 H 1.09006 * 109.47461 * 305.00509 * 3 2 1 5 5 C 1.53003 * 109.47484 * 185.00229 * 3 2 1 6 6 N 1.46502 * 109.47160 * 65.00142 * 3 2 1 7 7 C 1.34781 * 120.00107 * 205.00329 * 6 3 2 8 8 O 1.21281 * 120.00099 * 359.97438 * 7 6 3 9 9 C 1.50703 * 119.99845 * 180.02562 * 7 6 3 10 10 N 1.46498 * 109.47196 * 179.97438 * 9 7 6 11 11 N 1.40072 * 126.03481 * 90.02115 * 10 9 7 12 12 C 1.30829 * 108.33954 * 179.97438 * 11 10 9 13 13 C 1.50698 * 125.86038 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46897 * 5.97792 * 13 12 11 15 15 C 1.52998 * 109.47118 * 245.98301 * 13 12 11 16 16 C 1.52992 * 109.47403 * 125.98056 * 13 12 11 17 17 C 1.39821 * 108.28528 * 0.24310 * 12 11 10 18 18 C 1.50698 * 126.08688 * 179.75994 * 17 12 11 19 19 C 1.50692 * 109.47284 * 95.65020 * 18 17 12 20 20 H 1.08007 * 120.00040 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00233 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47194 * 89.99553 * 23 21 19 25 25 H 1.48503 * 109.46872 * 209.99631 * 23 21 19 26 26 H 1.48499 * 109.47337 * 329.99440 * 23 21 19 27 27 C 1.35124 * 126.03585 * 270.00109 * 10 9 7 28 28 O 1.35763 * 126.19563 * 359.97438 * 27 10 9 29 29 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47202 * 299.99747 * 1 2 3 31 31 H 1.08999 * 109.47015 * 60.00012 * 1 2 3 32 32 H 1.09005 * 109.47048 * 240.00001 * 2 1 3 33 33 H 1.08991 * 109.47381 * 120.00515 * 2 1 3 34 34 H 1.09000 * 109.47289 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.46609 * 300.00023 * 5 3 2 36 36 H 1.09000 * 109.47160 * 60.00139 * 5 3 2 37 37 H 0.97004 * 119.99591 * 24.99831 * 6 3 2 38 38 H 1.09002 * 109.47349 * 59.99506 * 9 7 6 39 39 H 1.09005 * 109.46593 * 299.99557 * 9 7 6 40 40 H 1.09000 * 109.47068 * 60.00391 * 14 13 12 41 41 H 1.08997 * 109.47615 * 300.00038 * 14 13 12 42 42 H 1.09003 * 109.47135 * 179.97438 * 14 13 12 43 43 H 1.08999 * 109.47348 * 184.43125 * 15 13 12 44 44 H 1.09002 * 109.47547 * 304.43278 * 15 13 12 45 45 H 1.09002 * 109.47066 * 64.42899 * 15 13 12 46 46 H 1.09000 * 109.47112 * 299.99945 * 16 13 12 47 47 H 1.09003 * 109.47003 * 60.00212 * 16 13 12 48 48 H 1.09007 * 109.47260 * 179.97438 * 16 13 12 49 49 H 1.09003 * 109.47156 * 215.65282 * 18 17 12 50 50 H 1.09000 * 109.47001 * 335.64652 * 18 17 12 51 51 H 0.97001 * 120.00204 * 180.02562 * 22 21 19 52 52 H 0.96702 * 113.99862 * 90.02652 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1258 6 7 1.6525 2.0974 1.2518 7 6 1.5256 3.4384 1.2996 8 8 1.7327 4.1029 0.3064 9 6 1.1275 4.1122 2.5875 10 7 1.0596 5.5608 2.3801 11 7 -0.0700 6.2831 1.9750 12 6 0.2553 7.5482 1.9003 13 6 -0.6634 8.6738 1.5003 14 6 -2.0862 8.1363 1.3344 15 6 -0.1876 9.2744 0.1761 16 6 -0.6492 9.7534 2.5843 17 6 1.6032 7.6759 2.2494 18 6 2.3911 8.9597 2.2924 19 6 2.3998 9.4968 3.7004 20 1 1.8865 8.9617 4.4857 21 6 3.0631 10.6713 3.9862 22 7 3.6886 11.3226 3.0301 23 14 3.0745 11.3366 5.7316 24 1 4.2449 10.7882 6.4628 25 1 3.1632 12.8186 5.6958 26 1 1.8245 10.9322 6.4237 27 6 2.0756 6.4361 2.5463 28 8 3.3403 6.1321 2.9351 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8898 34 1 3.9282 2.4720 -0.1253 35 1 3.9994 0.9053 0.7160 36 1 3.8532 0.9571 -1.0572 37 1 1.4871 1.5659 2.0463 38 1 1.8665 3.8899 3.3574 39 1 0.1515 3.7438 2.9036 40 1 -2.4253 7.7084 2.2779 41 1 -2.0964 7.3672 0.5622 42 1 -2.7509 8.9505 1.0456 43 1 -0.8040 10.1379 -0.0736 44 1 0.8526 9.5859 0.2713 45 1 -0.2722 8.5271 -0.6130 46 1 -0.9883 9.3255 3.5277 47 1 0.3645 10.1363 2.7024 48 1 -1.3134 10.5678 2.2947 49 1 3.4147 8.7688 1.9700 50 1 1.9312 9.6908 1.6275 51 1 4.1556 12.1487 3.2312 52 1 3.9400 5.9340 2.2029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178937087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:01 Heat of formation + Delta-G solvation = -22.384840 kcal Electronic energy + Delta-G solvation = -30836.293718 eV Core-core repulsion = 26837.390920 eV Total energy + Delta-G solvation = -3998.902798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96577 -39.81937 -37.05489 -36.67838 -35.76887 -33.31701 -32.88356 -32.02332 -30.27588 -29.93376 -27.43953 -26.63795 -26.36725 -25.94682 -24.16630 -22.77484 -22.10489 -20.99707 -20.52235 -19.94096 -18.22153 -17.57947 -17.12058 -16.46862 -16.20773 -15.60243 -15.31633 -14.74880 -14.45556 -14.28822 -14.14284 -14.08514 -13.91138 -13.72017 -13.59204 -13.01010 -12.86332 -12.72640 -12.54017 -12.21586 -12.13757 -11.95916 -11.67944 -11.63103 -11.48401 -11.47341 -11.36456 -11.17924 -11.06553 -10.90740 -10.72063 -10.65691 -10.42056 -10.35412 -10.16521 -10.01492 -9.57288 -9.33660 -9.28799 -9.17175 -8.40461 -8.26339 -7.30647 -5.89704 -3.90175 2.21130 2.46865 2.71275 3.14592 3.38337 3.44149 3.47169 3.58888 4.29843 4.53422 4.56328 4.63504 4.64355 4.68232 4.84323 5.06330 5.07863 5.19275 5.23344 5.25246 5.40397 5.42986 5.49652 5.52935 5.55223 5.63662 5.74772 5.83870 5.87653 5.95139 6.09208 6.22739 6.25525 6.32406 6.38654 6.44234 6.48948 6.62507 6.69167 6.73839 6.93378 6.98144 7.08295 7.26725 7.39915 7.47765 7.77805 7.87940 8.04192 8.07410 8.23121 8.42373 8.53227 9.13214 9.70900 11.19282 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.003178 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.613802 B = 8809.743535 C = 9925.720909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.727 5.727 7 C 0.496 3.504 8 O -0.516 6.516 9 C 0.121 3.879 10 N -0.383 5.383 11 N -0.285 5.285 12 C 0.102 3.898 13 C 0.021 3.979 14 C -0.132 4.132 15 C -0.141 4.141 16 C -0.152 4.152 17 C -0.175 4.175 18 C 0.088 3.912 19 C -0.492 4.492 20 H 0.053 0.947 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.887 3.113 24 H -0.283 1.283 25 H -0.288 1.288 26 H -0.274 1.274 27 C 0.238 3.762 28 O -0.459 6.459 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.046 0.954 47 H 0.107 0.893 48 H 0.047 0.953 49 H 0.019 0.981 50 H 0.038 0.962 51 H 0.259 0.741 52 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 -20.800 -5.063 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.223 4.223 6 N -0.381 5.381 7 C 0.280 3.720 8 O -0.389 6.389 9 C -0.006 4.006 10 N -0.177 5.177 11 N -0.109 5.109 12 C -0.064 4.064 13 C 0.018 3.982 14 C -0.190 4.190 15 C -0.199 4.199 16 C -0.210 4.210 17 C -0.186 4.186 18 C 0.050 3.950 19 C -0.531 4.531 20 H 0.071 0.929 21 C -0.143 4.143 22 N -0.536 5.536 23 Si 0.715 3.285 24 H -0.209 1.209 25 H -0.213 1.213 26 H -0.199 1.199 27 C 0.074 3.926 28 O -0.260 6.260 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.233 0.767 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.125 0.875 48 H 0.066 0.934 49 H 0.037 0.963 50 H 0.056 0.944 51 H 0.069 0.931 52 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.452 -21.032 -5.343 22.639 hybrid contribution 1.031 0.209 1.120 1.536 sum -5.421 -20.824 -4.223 21.928 Atomic orbital electron populations 1.21780 0.95229 1.01675 1.02432 1.21832 0.96626 0.95325 1.03038 1.20998 0.94960 0.92930 0.87464 0.89440 1.22183 0.95295 1.02836 1.01943 1.46054 1.71641 1.06706 1.13722 1.21188 0.77265 0.82381 0.91151 1.90773 1.48209 1.63836 1.36129 1.21181 1.05189 0.78794 0.95395 1.48100 1.08876 1.04230 1.56506 1.77196 1.05942 1.04761 1.22967 1.21873 0.94152 0.91934 0.98452 1.18884 0.91916 0.91065 0.96295 1.21777 0.95313 1.00184 1.01694 1.21936 1.02997 0.99806 0.95132 1.22141 1.05968 0.96469 0.96417 1.20551 0.94910 0.95943 1.07203 1.17759 0.93296 0.86639 0.97294 1.21061 1.31818 1.06308 0.93888 0.92910 1.24952 0.95681 0.96994 0.96674 1.69947 1.34812 1.17077 1.31795 0.86670 0.78399 0.77919 0.85517 1.20896 1.21344 1.19915 1.18437 0.82378 0.88395 1.03432 1.84896 1.15877 1.90325 1.34872 0.92545 0.92493 0.92522 0.90398 0.91372 0.91929 0.92445 0.91662 0.76700 0.86527 0.86501 0.92840 0.92858 0.92960 0.92470 0.90705 0.93374 0.93440 0.87456 0.93446 0.96252 0.94449 0.93102 0.76189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.80 37.16 0.36 -0.58 16 2 C -0.13 -0.74 5.47 -26.73 -0.15 -0.89 16 3 C 0.14 1.18 2.57 -67.93 -0.17 1.01 16 4 H 0.09 0.96 7.58 -51.93 -0.39 0.56 16 5 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 6 N -0.73 -6.26 4.53 -53.80 -0.24 -6.50 16 7 C 0.50 6.43 7.86 -10.98 -0.09 6.34 16 8 O -0.52 -9.23 16.09 5.56 0.09 -9.14 16 9 C 0.12 1.56 6.87 -5.19 -0.04 1.53 16 10 N -0.38 -7.15 3.10 -62.66 -0.19 -7.34 16 11 N -0.28 -5.78 11.86 33.66 0.40 -5.38 16 12 C 0.10 2.16 5.61 -82.43 -0.46 1.70 16 13 C 0.02 0.38 0.75 -155.67 -0.12 0.27 16 14 C -0.13 -2.12 7.96 37.16 0.30 -1.83 16 15 C -0.14 -2.49 8.36 37.16 0.31 -2.18 16 16 C -0.15 -2.98 8.25 37.15 0.31 -2.68 16 17 C -0.18 -4.05 5.11 -104.85 -0.54 -4.59 16 18 C 0.09 2.27 4.42 -29.04 -0.13 2.15 16 19 C -0.49 -13.72 7.48 -34.44 -0.26 -13.98 16 20 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 23 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.24 5.02 7.92 -16.92 -0.13 4.89 16 28 O -0.46 -8.82 13.53 -19.00 -0.26 -9.08 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 7.75 -51.93 -0.40 -0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 2.19 8.60 -40.82 -0.35 1.84 16 38 H 0.12 1.23 8.13 -51.93 -0.42 0.81 16 39 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.48 5.65 -51.93 -0.29 1.19 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.11 2.48 4.18 -51.93 -0.22 2.26 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.04 0.99 4.59 -51.93 -0.24 0.75 16 51 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 52 H 0.38 5.84 9.06 45.56 0.41 6.25 16 LS Contribution 418.50 15.07 6.31 6.31 Total: -1.00 -35.23 418.50 -6.94 -42.17 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.21 Total: 6.02 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.55 Total: -8.31 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.70 Total: -44.77 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.17 Total: -18.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.23 -6.94 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178937087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.783 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds