Wall clock time and date at job start Tue Mar 31 2020 20:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46675 * 2 1 4 4 H 1.08998 * 109.47054 * 55.00270 * 3 2 1 5 5 C 1.50706 * 109.46676 * 174.99686 * 3 2 1 6 6 H 1.07999 * 119.99540 * 120.00315 * 5 3 2 7 7 C 1.37867 * 120.00235 * 300.00329 * 5 3 2 8 8 N 1.31518 * 120.00344 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99862 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47414 * 90.00271 * 9 7 5 11 11 H 1.48507 * 109.46864 * 209.99851 * 9 7 5 12 12 H 1.48498 * 109.47437 * 329.99902 * 9 7 5 13 13 N 1.46499 * 109.47352 * 294.99721 * 3 2 1 14 14 C 1.34774 * 119.99593 * 85.00635 * 13 3 2 15 15 O 1.21278 * 120.00288 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99791 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.52286 * 299.91841 * 16 14 13 18 18 C 1.53038 * 109.49769 * 179.83446 * 16 14 13 19 19 C 1.53042 * 109.53927 * 178.68613 * 18 16 14 20 20 C 1.53187 * 109.31287 * 61.36456 * 19 18 16 21 21 N 1.46966 * 108.88867 * 305.44317 * 20 19 18 22 22 C 1.34775 * 120.65671 * 233.53395 * 21 20 19 23 23 O 1.21586 * 120.00128 * 168.98467 * 22 21 20 24 24 N 1.34780 * 119.99847 * 348.99325 * 22 21 20 25 25 C 1.47024 * 125.64848 * 8.52049 * 24 22 21 26 26 C 1.54316 * 107.27335 * 180.96915 * 25 24 22 27 27 C 1.55154 * 102.86271 * 22.52939 * 26 25 24 28 28 C 1.47422 * 125.64647 * 188.83234 * 24 22 21 29 29 C 1.46922 * 118.71473 * 53.35983 * 21 20 19 30 30 H 1.08988 * 109.47157 * 299.99681 * 1 2 3 31 31 H 1.09002 * 109.47140 * 60.00583 * 1 2 3 32 32 H 1.09007 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46733 * 239.99952 * 2 1 3 34 34 H 1.09000 * 109.46924 * 120.00167 * 2 1 3 35 35 H 0.97001 * 120.00178 * 180.02562 * 8 7 5 36 36 H 0.96994 * 120.00073 * 264.99902 * 13 3 2 37 37 H 1.09004 * 109.46230 * 298.70390 * 18 16 14 38 38 H 1.08996 * 109.46080 * 58.67888 * 18 16 14 39 39 H 1.09000 * 109.49979 * 181.31714 * 19 18 16 40 40 H 1.09002 * 109.49125 * 301.38290 * 19 18 16 41 41 H 1.09001 * 109.58810 * 65.15432 * 20 19 18 42 42 H 1.09002 * 109.58981 * 185.57971 * 20 19 18 43 43 H 1.08998 * 109.88263 * 300.51381 * 25 24 22 44 44 H 1.09001 * 109.88311 * 61.67711 * 25 24 22 45 45 H 1.08994 * 110.92531 * 264.10878 * 26 25 24 46 46 H 1.09010 * 110.73927 * 140.85469 * 26 25 24 47 47 H 1.09009 * 111.00198 * 206.22712 * 27 26 25 48 48 H 1.09000 * 111.03778 * 82.39128 * 27 26 25 49 49 H 1.09001 * 110.36410 * 274.66612 * 28 24 22 50 50 H 1.08993 * 110.36811 * 36.88133 * 28 24 22 51 51 H 1.08993 * 109.58913 * 186.77897 * 29 21 20 52 52 H 1.09004 * 109.59024 * 66.49126 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8813 1.3818 10 1 6.4416 2.1142 2.0851 11 1 6.4395 -0.3098 2.1549 12 1 6.6136 0.8418 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4344 16 6 0.0367 3.3387 -2.6544 17 1 0.7267 4.1553 -2.8667 18 6 -1.3843 3.8917 -2.5229 19 6 -1.7778 4.6052 -3.8184 20 6 -1.7544 3.6024 -4.9763 21 7 -0.4351 2.9564 -5.0197 22 6 0.2896 2.9495 -6.1560 23 8 1.4524 2.5947 -6.1334 24 7 -0.2745 3.3361 -7.3174 25 6 -1.6020 3.9513 -7.4622 26 6 -1.8307 4.1982 -8.9682 27 6 -0.8635 3.1848 -9.6352 28 6 0.3346 3.2061 -8.6536 29 6 0.0806 2.3215 -3.7992 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8292 -0.0604 2.9503 36 1 2.2719 2.1232 -1.9977 37 1 -2.0773 3.0715 -2.3352 38 1 -1.4239 4.5976 -1.6934 39 1 -2.7809 5.0189 -3.7156 40 1 -1.0709 5.4102 -4.0194 41 1 -2.5241 2.8464 -4.8206 42 1 -1.9369 4.1245 -5.9156 43 1 -2.3667 3.2782 -7.0747 44 1 -1.6321 4.8988 -6.9244 45 1 -1.5661 5.2201 -9.2398 46 1 -2.8637 3.9831 -9.2422 47 1 -0.5630 3.5257 -10.6261 48 1 -1.3104 2.1919 -9.6849 49 1 0.9798 4.0598 -8.8610 50 1 0.9010 2.2775 -8.7236 51 1 1.1087 1.9985 -3.9617 52 1 -0.5375 1.4600 -3.5463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183841685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:31 Heat of formation + Delta-G solvation = -34.025101 kcal Electronic energy + Delta-G solvation = -30951.157735 eV Core-core repulsion = 26951.750178 eV Total energy + Delta-G solvation = -3999.407557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05025 -39.39769 -37.90166 -37.03710 -35.02597 -33.22948 -32.44463 -31.76935 -31.31987 -30.56615 -29.36461 -26.94064 -25.93458 -24.23793 -23.19623 -22.79666 -21.69317 -21.27077 -20.11746 -19.61339 -19.17047 -17.56646 -16.98962 -16.79443 -16.21416 -15.68391 -15.41373 -15.17599 -15.01078 -14.52578 -14.33186 -14.18115 -13.96691 -13.76974 -13.39939 -13.27729 -13.14085 -13.04588 -12.76250 -12.63238 -12.49931 -12.03362 -11.75571 -11.63628 -11.53173 -11.28207 -11.20550 -11.16944 -10.93170 -10.91464 -10.79839 -10.57625 -10.43327 -10.26956 -10.11969 -9.99231 -9.58712 -9.08926 -9.00252 -8.90570 -8.48046 -8.43764 -7.76276 -6.07732 -4.16552 2.32302 3.02068 3.28488 3.35033 3.37794 3.40444 3.53507 4.02977 4.13175 4.19293 4.39990 4.42665 4.69840 4.77313 4.78330 4.86824 4.89337 5.03215 5.07689 5.23083 5.23992 5.28547 5.33199 5.39022 5.45108 5.47653 5.51629 5.65407 5.69500 5.72047 5.78027 5.83182 5.91807 6.02656 6.22861 6.37364 6.42468 6.42854 6.49578 6.69830 6.83827 7.08341 7.23388 7.41398 7.50942 7.67378 7.74486 7.78757 7.95451 8.23080 8.43501 8.73266 8.83099 9.18862 9.50823 10.97590 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.002759 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.177183 B =10147.952574 C =11146.023039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.707 5.707 14 C 0.508 3.492 15 O -0.547 6.547 16 C -0.124 4.124 17 H 0.093 0.907 18 C -0.097 4.097 19 C -0.134 4.134 20 C 0.046 3.954 21 N -0.621 5.621 22 C 0.725 3.275 23 O -0.581 6.581 24 N -0.639 5.639 25 C 0.094 3.906 26 C -0.136 4.136 27 C -0.134 4.134 28 C 0.125 3.875 29 C 0.142 3.858 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.021 0.979 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.264 0.736 36 H 0.389 0.611 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.130 0.870 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.098 0.902 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.773 8.258 -22.915 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.354 5.354 14 C 0.292 3.708 15 O -0.426 6.426 16 C -0.147 4.147 17 H 0.111 0.889 18 C -0.135 4.135 19 C -0.172 4.172 20 C -0.075 4.075 21 N -0.357 5.357 22 C 0.429 3.571 23 O -0.458 6.458 24 N -0.379 5.379 25 C -0.028 4.028 26 C -0.174 4.174 27 C -0.172 4.172 28 C 0.002 3.998 29 C 0.018 3.982 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.222 0.778 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.147 0.853 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.117 0.883 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.585 7.875 -21.929 26.971 hybrid contribution 1.235 0.027 -0.034 1.236 sum -12.349 7.902 -21.963 26.407 Atomic orbital electron populations 1.21831 0.98409 0.97929 1.01143 1.21929 0.92553 0.99853 1.02290 1.18775 0.94171 0.89173 0.81053 0.93367 1.21258 0.90813 1.38796 1.06219 0.92082 1.24876 0.98552 0.94825 0.95415 1.69898 1.35069 1.37809 1.09324 0.86471 0.84988 0.77572 0.78223 1.20621 1.21104 1.19794 1.46563 1.14694 1.55597 1.18543 1.20089 0.82818 0.79356 0.88557 1.90660 1.51556 1.59837 1.40521 1.21745 0.99408 0.99396 0.94121 0.88854 1.21283 0.94687 1.00639 0.96865 1.21947 1.01942 0.98123 0.95204 1.23378 0.84532 0.96686 1.02940 1.47139 1.19277 1.59775 1.09550 1.15403 0.84061 0.78318 0.79341 1.90951 1.14647 1.55437 1.84748 1.47528 1.18649 1.66010 1.05729 1.22419 0.85919 0.97694 0.96803 1.22742 1.00613 1.00247 0.93797 1.22808 0.95776 1.00117 0.98539 1.22063 0.95430 1.02415 0.79871 1.21417 1.01642 0.93768 0.81324 0.93197 0.94353 0.95944 0.95008 0.88329 0.92637 0.77833 0.91106 0.90847 0.90591 0.91723 0.91738 0.85336 0.90517 0.90332 0.90354 0.89836 0.89657 0.90498 0.91625 0.90374 0.88332 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.90 2.24 -69.08 -0.15 6.75 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.13 11.30 55.43 0.63 -24.51 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 13 N -0.71 -15.01 4.93 -54.93 -0.27 -15.28 16 14 C 0.51 10.01 5.73 -10.98 -0.06 9.95 16 15 O -0.55 -12.48 13.12 5.56 0.07 -12.41 16 16 C -0.12 -1.87 2.68 -91.65 -0.25 -2.12 16 17 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 18 C -0.10 -1.26 4.46 -26.69 -0.12 -1.38 16 19 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 20 C 0.05 0.41 5.25 -3.69 -0.02 0.39 16 21 N -0.62 -7.80 2.98 -178.47 -0.53 -8.33 16 22 C 0.73 10.19 8.33 -86.92 -0.72 9.47 16 23 O -0.58 -10.58 16.13 5.29 0.09 -10.49 16 24 N -0.64 -6.47 3.33 -218.77 -0.73 -7.20 16 25 C 0.09 0.57 4.87 -3.07 -0.01 0.55 16 26 C -0.14 -0.54 6.95 -24.90 -0.17 -0.71 16 27 C -0.13 -0.65 7.08 -24.58 -0.17 -0.82 16 28 C 0.13 1.04 6.88 -2.53 -0.02 1.02 16 29 C 0.14 2.05 5.58 -3.71 -0.02 2.03 16 30 H 0.05 1.19 7.85 -51.94 -0.41 0.79 16 31 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 2.69 5.95 -51.93 -0.31 2.39 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.39 7.60 8.08 -40.82 -0.33 7.27 16 37 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 38 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.13 0.86 1.88 -102.25 -0.19 0.67 16 43 H 0.08 0.42 6.59 -51.93 -0.34 0.07 16 44 H 0.08 0.42 6.67 -51.93 -0.35 0.07 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 47 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 51 H 0.10 1.59 6.61 -51.93 -0.34 1.25 16 52 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -33.53 391.67 -10.81 -44.34 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.83 Total: 7.13 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -2.11 Total: 4.70 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.90 Total: -55.31 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.16 Total: -22.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.53 -10.81 -44.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.319 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds