Wall clock time and date at job start Tue Mar 31 2020 20:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46675 * 2 1 4 4 H 1.08998 * 109.47054 * 55.00270 * 3 2 1 5 5 C 1.50706 * 109.46676 * 174.99686 * 3 2 1 6 6 H 1.07999 * 119.99540 * 120.00315 * 5 3 2 7 7 C 1.37867 * 120.00235 * 300.00329 * 5 3 2 8 8 N 1.31518 * 120.00344 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99862 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47414 * 90.00271 * 9 7 5 11 11 H 1.48507 * 109.46864 * 209.99851 * 9 7 5 12 12 H 1.48498 * 109.47437 * 329.99902 * 9 7 5 13 13 N 1.46499 * 109.47352 * 294.99721 * 3 2 1 14 14 C 1.34774 * 119.99593 * 85.00635 * 13 3 2 15 15 O 1.21278 * 120.00288 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99791 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.52286 * 299.91841 * 16 14 13 18 18 C 1.53038 * 109.49769 * 179.83446 * 16 14 13 19 19 C 1.53042 * 109.53927 * 178.68613 * 18 16 14 20 20 C 1.53187 * 109.31287 * 61.36456 * 19 18 16 21 21 N 1.46966 * 108.88867 * 305.44317 * 20 19 18 22 22 C 1.34775 * 120.65671 * 233.53395 * 21 20 19 23 23 O 1.21586 * 120.00128 * 168.98467 * 22 21 20 24 24 N 1.34780 * 119.99847 * 348.99325 * 22 21 20 25 25 C 1.47024 * 125.64848 * 8.52049 * 24 22 21 26 26 C 1.54316 * 107.27335 * 180.96915 * 25 24 22 27 27 C 1.55154 * 102.86271 * 22.52939 * 26 25 24 28 28 C 1.47422 * 125.64647 * 188.83234 * 24 22 21 29 29 C 1.46922 * 118.71473 * 53.35983 * 21 20 19 30 30 H 1.08988 * 109.47157 * 299.99681 * 1 2 3 31 31 H 1.09002 * 109.47140 * 60.00583 * 1 2 3 32 32 H 1.09007 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46733 * 239.99952 * 2 1 3 34 34 H 1.09000 * 109.46924 * 120.00167 * 2 1 3 35 35 H 0.97001 * 120.00178 * 180.02562 * 8 7 5 36 36 H 0.96994 * 120.00073 * 264.99902 * 13 3 2 37 37 H 1.09004 * 109.46230 * 298.70390 * 18 16 14 38 38 H 1.08996 * 109.46080 * 58.67888 * 18 16 14 39 39 H 1.09000 * 109.49979 * 181.31714 * 19 18 16 40 40 H 1.09002 * 109.49125 * 301.38290 * 19 18 16 41 41 H 1.09001 * 109.58810 * 65.15432 * 20 19 18 42 42 H 1.09002 * 109.58981 * 185.57971 * 20 19 18 43 43 H 1.08998 * 109.88263 * 300.51381 * 25 24 22 44 44 H 1.09001 * 109.88311 * 61.67711 * 25 24 22 45 45 H 1.08994 * 110.92531 * 264.10878 * 26 25 24 46 46 H 1.09010 * 110.73927 * 140.85469 * 26 25 24 47 47 H 1.09009 * 111.00198 * 206.22712 * 27 26 25 48 48 H 1.09000 * 111.03778 * 82.39128 * 27 26 25 49 49 H 1.09001 * 110.36410 * 274.66612 * 28 24 22 50 50 H 1.08993 * 110.36811 * 36.88133 * 28 24 22 51 51 H 1.08993 * 109.58913 * 186.77897 * 29 21 20 52 52 H 1.09004 * 109.59024 * 66.49126 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8813 1.3818 10 1 6.4416 2.1142 2.0851 11 1 6.4395 -0.3098 2.1549 12 1 6.6136 0.8418 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4344 16 6 0.0367 3.3387 -2.6544 17 1 0.7267 4.1553 -2.8667 18 6 -1.3843 3.8917 -2.5229 19 6 -1.7778 4.6052 -3.8184 20 6 -1.7544 3.6024 -4.9763 21 7 -0.4351 2.9564 -5.0197 22 6 0.2896 2.9495 -6.1560 23 8 1.4524 2.5947 -6.1334 24 7 -0.2745 3.3361 -7.3174 25 6 -1.6020 3.9513 -7.4622 26 6 -1.8307 4.1982 -8.9682 27 6 -0.8635 3.1848 -9.6352 28 6 0.3346 3.2061 -8.6536 29 6 0.0806 2.3215 -3.7992 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8292 -0.0604 2.9503 36 1 2.2719 2.1232 -1.9977 37 1 -2.0773 3.0715 -2.3352 38 1 -1.4239 4.5976 -1.6934 39 1 -2.7809 5.0189 -3.7156 40 1 -1.0709 5.4102 -4.0194 41 1 -2.5241 2.8464 -4.8206 42 1 -1.9369 4.1245 -5.9156 43 1 -2.3667 3.2782 -7.0747 44 1 -1.6321 4.8988 -6.9244 45 1 -1.5661 5.2201 -9.2398 46 1 -2.8637 3.9831 -9.2422 47 1 -0.5630 3.5257 -10.6261 48 1 -1.3104 2.1919 -9.6849 49 1 0.9798 4.0598 -8.8610 50 1 0.9010 2.2775 -8.7236 51 1 1.1087 1.9985 -3.9617 52 1 -0.5375 1.4600 -3.5463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183841685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:30 Heat of formation + Delta-G solvation = -56.181046 kcal Electronic energy + Delta-G solvation = -30952.118489 eV Core-core repulsion = 26951.750178 eV Total energy + Delta-G solvation = -4000.368311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99761 -40.86943 -38.79717 -38.15454 -36.90927 -34.44493 -34.19526 -33.05214 -32.43858 -31.80367 -30.06624 -28.88231 -26.85407 -25.58851 -24.72000 -23.84488 -22.47413 -22.18909 -21.51397 -21.03571 -20.58063 -19.03114 -18.08325 -17.68174 -17.43059 -17.33729 -16.94886 -16.64054 -16.07377 -15.81299 -15.48302 -15.38914 -14.98645 -14.81260 -14.62701 -14.47921 -14.13547 -14.12478 -13.85233 -13.83648 -13.50700 -13.42991 -13.21611 -13.14398 -12.91545 -12.71529 -12.55465 -12.42826 -12.17669 -12.09722 -12.06983 -11.95453 -11.66786 -11.59848 -11.54507 -11.44734 -11.07392 -10.81030 -10.60919 -10.47805 -10.02723 -9.64150 -9.33735 -8.18446 -6.35420 1.39420 1.41633 1.41959 1.52965 1.82016 2.02134 2.34052 2.60513 2.76184 3.10497 3.58514 3.62870 3.74897 3.78604 3.82655 4.02806 4.08912 4.18061 4.25904 4.32133 4.43306 4.48077 4.50910 4.51721 4.55943 4.61645 4.71936 4.74127 4.78187 4.86716 4.88888 4.98281 5.01561 5.03376 5.05733 5.16597 5.18543 5.24184 5.28857 5.38409 5.39452 5.42783 5.47960 5.54534 5.60737 5.78095 5.90132 5.94350 6.15653 6.72188 6.85169 6.95665 7.31029 7.42309 7.53785 8.86788 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.002759 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.177183 B =10147.952574 C =11146.023039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.265 1.265 13 N -0.707 5.707 14 C 0.506 3.494 15 O -0.578 6.578 16 C -0.109 4.109 17 H 0.097 0.903 18 C -0.095 4.095 19 C -0.124 4.124 20 C 0.041 3.959 21 N -0.619 5.619 22 C 0.715 3.285 23 O -0.635 6.635 24 N -0.638 5.638 25 C 0.080 3.920 26 C -0.125 4.125 27 C -0.124 4.124 28 C 0.115 3.885 29 C 0.150 3.850 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.266 0.734 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.160 0.840 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.055 0.945 51 H 0.077 0.923 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.402 9.529 -25.704 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.589 4.589 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.190 1.190 13 N -0.355 5.355 14 C 0.293 3.707 15 O -0.459 6.459 16 C -0.131 4.131 17 H 0.115 0.885 18 C -0.133 4.133 19 C -0.162 4.162 20 C -0.079 4.079 21 N -0.355 5.355 22 C 0.419 3.581 23 O -0.517 6.517 24 N -0.376 5.376 25 C -0.041 4.041 26 C -0.163 4.163 27 C -0.162 4.162 28 C -0.008 4.008 29 C 0.025 3.975 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.176 0.824 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.095 0.905 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.274 9.183 -24.778 30.521 hybrid contribution 1.699 -0.342 0.819 1.917 sum -13.575 8.841 -23.959 28.922 Atomic orbital electron populations 1.21660 0.96681 0.99173 1.00329 1.21773 0.94020 0.99043 1.01124 1.18366 0.93479 0.89280 0.81347 0.98117 1.21574 0.91674 1.39006 1.06624 0.91701 1.25726 1.03213 0.94319 0.94998 1.70037 1.36964 1.38314 1.09781 0.85414 0.79295 0.77610 0.78439 1.20261 1.20593 1.18954 1.46398 1.15751 1.55923 1.17462 1.20875 0.81641 0.78417 0.89814 1.90641 1.52242 1.60829 1.42172 1.21654 1.01014 0.99031 0.91435 0.88478 1.21301 0.92757 1.00391 0.98838 1.21930 1.03703 0.97706 0.92849 1.23770 0.82730 0.97000 1.04355 1.47121 1.20325 1.59670 1.08379 1.15671 0.83636 0.78331 0.80503 1.90903 1.17173 1.57850 1.85750 1.47618 1.20131 1.64984 1.04912 1.22743 0.83919 0.98269 0.99131 1.22753 1.01561 1.00447 0.91540 1.22787 0.94262 1.00758 0.98421 1.22255 0.97075 1.01298 0.80146 1.21139 1.00644 0.93610 0.82104 0.95333 0.93727 0.93568 0.94473 0.90945 0.92522 0.76799 0.91778 0.92051 0.87348 0.91624 0.90563 0.82400 0.89183 0.88798 0.89258 0.87489 0.87732 0.90499 0.91626 0.92675 0.90489 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.95 16 2 C -0.12 -6.16 5.45 30.60 0.17 -6.00 16 3 C 0.28 14.87 2.24 44.25 0.10 14.96 16 4 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 5 C -0.55 -30.60 8.73 25.60 0.22 -30.38 16 6 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.99 5.29 84.65 0.45 1.43 16 8 N -0.91 -53.43 11.30 21.44 0.24 -53.19 16 9 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.71 -31.19 4.93 -446.10 -2.20 -33.39 16 14 C 0.51 20.54 5.73 87.66 0.50 21.04 16 15 O -0.58 -27.29 13.12 -3.02 -0.04 -27.33 16 16 C -0.11 -3.29 2.68 -11.46 -0.03 -3.32 16 17 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 18 C -0.09 -2.36 4.46 30.62 0.14 -2.22 16 19 C -0.12 -1.93 6.08 30.67 0.19 -1.75 16 20 C 0.04 0.61 5.25 86.35 0.45 1.06 16 21 N -0.62 -14.85 2.98 -836.81 -2.49 -17.35 16 22 C 0.72 19.84 8.33 179.05 1.49 21.33 16 23 O -0.64 -23.96 16.13 -3.99 -0.06 -24.02 16 24 N -0.64 -11.89 3.33 -964.33 -3.21 -15.10 16 25 C 0.08 0.67 4.87 86.73 0.42 1.09 16 26 C -0.13 -0.44 6.95 31.78 0.22 -0.22 16 27 C -0.12 -0.84 7.08 31.99 0.23 -0.61 16 28 C 0.11 1.79 6.88 86.86 0.60 2.39 16 29 C 0.15 4.35 5.58 86.37 0.48 4.83 16 30 H 0.03 1.40 7.85 -2.39 -0.02 1.38 16 31 H 0.04 1.96 5.65 -2.39 -0.01 1.94 16 32 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 4.11 5.95 -2.39 -0.01 4.10 16 35 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.40 16.13 8.08 -92.71 -0.75 15.38 16 37 H 0.06 1.69 8.13 -2.38 -0.02 1.67 16 38 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 42 H 0.16 1.44 1.88 -49.65 -0.09 1.35 16 43 H 0.09 0.58 6.59 -2.39 -0.02 0.56 16 44 H 0.09 0.56 6.67 -2.39 -0.02 0.54 16 45 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 47 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 48 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 51 H 0.08 2.59 6.61 -2.39 -0.02 2.58 16 52 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -77.43 391.67 0.59 -76.84 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.08 Total: 28.91 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 6.24 Total: 18.71 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -7.66 Total: -119.02 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.10 Total: -51.35 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -77.43 0.59 -76.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.661 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds