Wall clock time and date at job start Tue Mar 31 2020 20:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47533 * 2 1 4 4 H 1.09011 * 109.47104 * 300.93836 * 3 2 1 5 5 C 1.50693 * 109.47800 * 180.93363 * 3 2 1 6 6 H 1.08000 * 120.00726 * 245.22396 * 5 3 2 7 7 C 1.37887 * 119.99658 * 65.22044 * 5 3 2 8 8 N 1.31509 * 119.99739 * 5.10995 * 7 5 3 9 9 Si 1.86800 * 119.99800 * 185.10591 * 7 5 3 10 10 H 1.48497 * 109.47323 * 95.00380 * 9 7 5 11 11 H 1.48507 * 109.46813 * 215.00154 * 9 7 5 12 12 H 1.48504 * 109.47199 * 334.99797 * 9 7 5 13 13 N 1.46500 * 109.47301 * 60.93044 * 3 2 1 14 14 C 1.34776 * 120.00472 * 275.00830 * 13 3 2 15 15 O 1.21286 * 119.99899 * 359.97438 * 14 13 3 16 16 C 1.50690 * 120.00263 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.52514 * 299.91230 * 16 14 13 18 18 C 1.53357 * 109.68792 * 179.75122 * 16 14 13 19 19 C 1.53035 * 109.61058 * 178.74788 * 18 16 14 20 20 C 1.53195 * 109.31812 * 61.36929 * 19 18 16 21 21 N 1.46932 * 108.77402 * 305.37125 * 20 19 18 22 22 C 1.34779 * 120.62292 * 233.58552 * 21 20 19 23 23 O 1.21591 * 119.99433 * 168.97039 * 22 21 20 24 24 N 1.34775 * 120.00372 * 348.96096 * 22 21 20 25 25 C 1.47021 * 125.64732 * 8.72540 * 24 22 21 26 26 C 1.54318 * 107.27446 * 180.96657 * 25 24 22 27 27 C 1.55157 * 102.86083 * 22.52460 * 26 25 24 28 28 C 1.47421 * 125.64743 * 189.02658 * 24 22 21 29 29 C 1.46921 * 118.74000 * 53.60331 * 21 20 19 30 30 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47488 * 300.00504 * 1 2 3 32 32 H 1.09010 * 109.46870 * 60.00512 * 1 2 3 33 33 H 1.08998 * 109.47488 * 239.99496 * 2 1 3 34 34 H 1.09001 * 109.46975 * 120.00098 * 2 1 3 35 35 H 0.97003 * 119.99431 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99813 * 95.00412 * 13 3 2 37 37 H 1.08991 * 109.41823 * 58.70229 * 18 16 14 38 38 H 1.09001 * 109.41831 * 298.78120 * 18 16 14 39 39 H 1.09010 * 109.49588 * 301.42008 * 19 18 16 40 40 H 1.08996 * 109.50017 * 181.32779 * 19 18 16 41 41 H 1.08996 * 109.58939 * 185.58129 * 20 19 18 42 42 H 1.09001 * 109.70105 * 65.22290 * 20 19 18 43 43 H 1.09002 * 109.87811 * 300.50852 * 25 24 22 44 44 H 1.08999 * 109.88259 * 61.67400 * 25 24 22 45 45 H 1.08997 * 110.92048 * 264.10844 * 26 25 24 46 46 H 1.08998 * 110.74172 * 140.84843 * 26 25 24 47 47 H 1.09004 * 111.00168 * 206.23045 * 27 26 25 48 48 H 1.08999 * 111.03832 * 82.39436 * 27 26 25 49 49 H 1.08999 * 110.37146 * 274.67873 * 28 24 22 50 50 H 1.09007 * 110.36743 * 36.88825 * 28 24 22 51 51 H 1.09000 * 109.59100 * 66.18168 * 29 21 20 52 52 H 1.09005 * 109.58263 * 186.46375 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6630 1.9611 -0.8815 5 6 3.5468 1.4425 -0.0231 6 1 4.0999 1.8299 0.8197 7 6 4.2194 0.9480 -1.1205 8 7 3.5493 0.5695 -2.1869 9 14 6.0825 0.8157 -1.0925 10 1 6.4754 -0.5550 -0.6778 11 1 6.6191 1.0955 -2.4487 12 1 6.6343 1.8017 -0.1288 13 7 1.5702 2.1266 1.2072 14 6 0.3484 2.6951 1.2274 15 8 -0.3621 2.6406 0.2459 16 6 -0.1351 3.3983 2.4693 17 1 -0.1609 2.6934 3.3004 18 6 -1.5425 3.9590 2.2308 19 6 -2.0442 4.6456 3.5032 20 6 -1.1130 5.8113 3.8509 21 7 0.2639 5.3061 3.9406 22 6 1.0072 5.5307 5.0422 23 8 2.0623 4.9456 5.1931 24 7 0.5811 6.4039 5.9762 25 6 -0.7441 7.0395 6.0138 26 6 -0.7692 7.9743 7.2414 27 6 0.7363 8.2490 7.4972 28 6 1.3689 6.8846 7.1258 29 6 0.8149 4.5519 2.8065 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 4.0225 0.2219 -2.9590 36 1 2.1385 2.1704 1.9921 37 1 -2.2172 3.1446 1.9674 38 1 -1.5111 4.6824 1.4161 39 1 -2.0521 3.9288 4.3244 40 1 -3.0536 5.0227 3.3392 41 1 -1.4075 6.2413 4.8082 42 1 -1.1726 6.5736 3.0740 43 1 -0.9045 7.6162 5.1029 44 1 -1.5176 6.2781 6.1142 45 1 -1.2219 7.4777 8.0996 46 1 -1.2964 8.9001 7.0108 47 1 0.9167 8.4912 8.5445 48 1 1.1056 9.0412 6.8459 49 1 1.2860 6.1883 7.9603 50 1 2.4136 7.0135 6.8426 51 1 0.9120 5.2096 1.9427 52 1 1.7935 4.1530 3.0739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183841701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:33 Heat of formation + Delta-G solvation = -57.368407 kcal Electronic energy + Delta-G solvation = -30883.975328 eV Core-core repulsion = 26883.555530 eV Total energy + Delta-G solvation = -4000.419799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99497 -40.86653 -38.80337 -38.15507 -36.88527 -34.43157 -34.19436 -33.12055 -32.41351 -31.78923 -30.06365 -28.91221 -26.85350 -25.61173 -24.70059 -23.85584 -22.47625 -22.19091 -21.52883 -21.03656 -20.58417 -19.04784 -18.07790 -17.68314 -17.41386 -17.30764 -16.95824 -16.66039 -16.05185 -15.80420 -15.56607 -15.40855 -14.94745 -14.81834 -14.63576 -14.46510 -14.20389 -14.04664 -13.89861 -13.70029 -13.66751 -13.34224 -13.27916 -13.15629 -12.93935 -12.66446 -12.55052 -12.44116 -12.20279 -12.10386 -12.08326 -11.97238 -11.65938 -11.63906 -11.54737 -11.44969 -11.08538 -10.79635 -10.60697 -10.49610 -10.03370 -9.65173 -9.33777 -8.21133 -6.35083 1.38701 1.40986 1.41653 1.52643 1.82342 2.02167 2.34142 2.60316 2.76071 3.10205 3.58328 3.62646 3.74614 3.78978 3.83411 4.02995 4.08986 4.18035 4.25522 4.31811 4.43250 4.45398 4.50272 4.51194 4.51994 4.61625 4.70933 4.72558 4.77549 4.86664 4.88897 4.98405 5.01427 5.02883 5.03848 5.16432 5.18057 5.21975 5.28651 5.38103 5.39328 5.40884 5.47502 5.52560 5.59720 5.73925 5.89808 5.94150 6.07355 6.73647 6.85036 6.95873 7.31174 7.42026 7.54179 8.87056 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.002882 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.581491 B = 9712.166449 C =11185.055161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.278 3.722 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.707 5.707 14 C 0.507 3.493 15 O -0.579 6.579 16 C -0.108 4.108 17 H 0.101 0.899 18 C -0.095 4.095 19 C -0.123 4.123 20 C 0.040 3.960 21 N -0.619 5.619 22 C 0.715 3.285 23 O -0.635 6.635 24 N -0.638 5.638 25 C 0.080 3.920 26 C -0.125 4.125 27 C -0.124 4.124 28 C 0.115 3.885 29 C 0.148 3.852 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.398 0.602 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.160 0.840 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.065 0.935 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.716 17.084 21.919 30.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.355 5.355 14 C 0.293 3.707 15 O -0.459 6.459 16 C -0.130 4.130 17 H 0.119 0.881 18 C -0.133 4.133 19 C -0.161 4.161 20 C -0.079 4.079 21 N -0.355 5.355 22 C 0.419 3.581 23 O -0.517 6.517 24 N -0.376 5.376 25 C -0.041 4.041 26 C -0.163 4.163 27 C -0.163 4.163 28 C -0.008 4.008 29 C 0.024 3.976 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.176 0.824 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.083 0.917 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.593 16.608 21.052 30.062 hybrid contribution 1.636 -0.723 -0.604 1.888 sum -11.957 15.885 20.448 28.520 Atomic orbital electron populations 1.21670 0.96450 0.99401 1.00420 1.21701 0.94211 0.99011 1.00421 1.18365 0.92773 0.88836 0.82618 0.97688 1.21554 0.91417 1.42341 1.03438 0.91680 1.25726 1.03319 0.94622 0.94502 1.70096 1.37487 1.42956 1.04781 0.85436 0.79384 0.78708 0.77461 1.19749 1.20892 1.19158 1.46386 1.16577 1.55110 1.17441 1.20856 0.81488 0.78673 0.89668 1.90646 1.56268 1.61641 1.37390 1.21697 0.98342 0.97601 0.95386 0.88113 1.21353 0.92706 1.00398 0.98818 1.21925 1.00175 0.97595 0.96410 1.23769 0.79170 0.97137 1.07858 1.47109 1.15517 1.57745 1.15095 1.15674 0.82828 0.79770 0.79873 1.90903 1.27030 1.54317 1.79433 1.47614 1.17508 1.45560 1.26957 1.22742 0.83735 0.96658 1.00937 1.22752 0.96409 1.00186 0.96922 1.22787 0.95565 0.94374 1.03524 1.22257 0.95284 0.96327 0.86899 1.21140 0.96494 0.92089 0.87922 0.93321 0.93807 0.95044 0.92544 0.93917 0.92555 0.76800 0.91773 0.92098 0.91413 0.87348 0.82355 0.90763 0.89274 0.88707 0.89173 0.87521 0.87694 0.90582 0.91528 0.92756 0.91708 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.45 71.98 0.61 -4.91 16 2 C -0.11 -5.77 5.48 30.59 0.17 -5.60 16 3 C 0.28 14.76 2.16 44.24 0.10 14.86 16 4 H 0.01 0.33 7.56 -2.38 -0.02 0.31 16 5 C -0.55 -30.53 8.67 25.60 0.22 -30.30 16 6 H 0.07 3.49 7.72 -2.91 -0.02 3.47 16 7 C 0.02 1.05 5.26 84.66 0.45 1.49 16 8 N -0.92 -54.13 11.93 21.45 0.26 -53.87 16 9 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.71 -31.06 4.88 -446.11 -2.18 -33.24 16 14 C 0.51 20.53 5.55 87.65 0.49 21.01 16 15 O -0.58 -27.35 13.13 -3.05 -0.04 -27.39 16 16 C -0.11 -3.25 2.69 -11.36 -0.03 -3.28 16 17 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 18 C -0.09 -2.35 4.48 30.73 0.14 -2.21 16 19 C -0.12 -1.91 6.08 30.67 0.19 -1.72 16 20 C 0.04 0.61 5.25 86.36 0.45 1.06 16 21 N -0.62 -15.16 2.97 -836.88 -2.49 -17.65 16 22 C 0.72 20.13 8.32 179.05 1.49 21.62 16 23 O -0.64 -24.23 16.13 -4.00 -0.06 -24.30 16 24 N -0.64 -12.07 3.33 -965.02 -3.21 -15.28 16 25 C 0.08 0.68 4.87 86.73 0.42 1.11 16 26 C -0.13 -0.46 6.95 31.78 0.22 -0.24 16 27 C -0.12 -0.87 7.08 31.99 0.23 -0.64 16 28 C 0.12 1.82 6.88 86.86 0.60 2.42 16 29 C 0.15 4.44 5.57 86.36 0.48 4.92 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.89 5.75 -2.39 -0.01 1.88 16 32 H 0.03 1.53 7.59 -2.38 -0.02 1.51 16 33 H 0.06 3.15 6.68 -2.39 -0.02 3.13 16 34 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.40 16.03 8.06 -92.71 -0.75 15.28 16 37 H 0.06 1.71 8.07 -2.39 -0.02 1.69 16 38 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 39 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.16 1.48 1.88 -49.88 -0.09 1.39 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 0.61 6.58 -2.39 -0.02 0.59 16 44 H 0.10 0.56 6.69 -2.39 -0.02 0.55 16 45 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 48 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 50 H 0.05 1.10 8.12 -2.38 -0.02 1.08 16 51 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.08 2.66 6.61 -2.38 -0.02 2.64 16 Total: -1.00 -78.01 392.46 0.60 -77.41 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.08 Total: 28.62 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.21 Total: 19.59 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -7.62 Total: -120.05 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.10 Total: -51.69 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -78.01 0.60 -77.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.045 kcal (2) G-P(sol) polarization free energy of solvation -78.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds